Wall clock time and date at job start Tue Mar 31 2020 18:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47083 * 2 1 4 4 C 1.36937 * 120.00230 * 275.30747 * 3 2 1 5 5 H 1.08000 * 119.99428 * 37.57581 * 4 3 2 6 6 C 1.38807 * 120.00555 * 217.57821 * 4 3 2 7 7 N 1.31629 * 119.99430 * 21.42385 * 6 4 3 8 8 Si 1.86792 * 120.00602 * 201.42291 * 6 4 3 9 9 H 1.48506 * 109.47109 * 59.99751 * 8 6 4 10 10 H 1.48497 * 109.47382 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46992 * 300.00260 * 8 6 4 12 12 C 1.46503 * 119.99738 * 95.30414 * 3 2 1 13 13 C 1.52996 * 109.47208 * 270.00096 * 12 3 2 14 14 C 1.53003 * 109.46790 * 180.02562 * 13 12 3 15 15 N 1.46504 * 109.46751 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99932 * 179.97438 * 15 14 13 17 17 O 1.21584 * 120.00104 * 0.02562 * 16 15 14 18 18 C 1.47664 * 120.00074 * 180.02562 * 16 15 14 19 19 C 1.40154 * 119.85777 * 0.02962 * 18 16 15 20 20 C 1.36217 * 120.08260 * 179.97438 * 19 18 16 21 21 C 1.39579 * 120.43319 * 359.97438 * 20 19 18 22 22 S 1.76150 * 131.53476 * 180.02562 * 21 20 19 23 23 C 1.70634 * 90.85515 * 180.02562 * 22 21 20 24 24 N 1.27848 * 111.58819 * 0.02562 * 23 22 21 25 25 C 1.34745 * 117.84098 * 359.97438 * 24 23 22 26 26 C 1.38719 * 119.85147 * 180.02562 * 18 16 15 27 27 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47206 * 299.99866 * 1 2 3 29 29 H 1.09004 * 109.46915 * 60.00208 * 1 2 3 30 30 H 1.09000 * 109.47707 * 240.00100 * 2 1 3 31 31 H 1.09001 * 109.47554 * 119.99422 * 2 1 3 32 32 H 0.97002 * 119.99544 * 180.02562 * 7 6 4 33 33 H 1.09008 * 109.46782 * 150.00327 * 12 3 2 34 34 H 1.08996 * 109.47241 * 30.01090 * 12 3 2 35 35 H 1.08994 * 109.47034 * 60.00396 * 13 12 3 36 36 H 1.09000 * 109.47457 * 300.00000 * 13 12 3 37 37 H 1.09001 * 109.47098 * 60.00680 * 14 13 12 38 38 H 1.08995 * 109.47689 * 300.00101 * 14 13 12 39 39 H 0.97000 * 120.00202 * 0.02562 * 15 14 13 40 40 H 1.08002 * 119.95734 * 359.97438 * 19 18 16 41 41 H 1.07998 * 119.78379 * 180.28144 * 20 19 18 42 42 H 1.08002 * 124.20137 * 180.02562 * 23 22 21 43 43 H 1.07995 * 119.98143 * 0.05140 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7981 -0.6489 8 14 3.0994 4.2795 -2.6585 9 1 1.9627 5.1786 -2.3345 10 1 4.3618 5.0615 -2.6660 11 1 2.8845 3.6725 -3.9966 12 6 2.3730 2.0328 1.2634 13 6 1.1424 2.7383 1.8365 14 6 1.5131 3.4192 3.1556 15 7 0.3348 4.0952 3.7041 16 6 0.4245 4.7663 4.8695 17 8 1.4834 4.8110 5.4653 18 6 -0.7632 5.4473 5.4226 19 6 -1.9825 5.3933 4.7336 20 6 -3.0812 6.0194 5.2400 21 6 -3.0039 6.7179 6.4460 22 16 -4.2157 7.6172 7.3547 23 6 -3.0671 7.9998 8.5571 24 7 -1.9205 7.5028 8.2875 25 6 -1.7959 6.7870 7.1527 26 6 -0.6673 6.1375 6.6221 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 5.0488 3.4033 -0.7829 33 1 3.1615 2.7643 1.0860 34 1 2.7254 1.2835 1.9721 35 1 0.3540 2.0069 2.0138 36 1 0.7901 3.4877 1.1277 37 1 2.3014 4.1507 2.9779 38 1 1.8656 2.6702 3.8646 39 1 -0.5101 4.0593 3.2289 40 1 -2.0510 4.8547 3.8000 41 1 -4.0194 5.9709 4.7074 42 1 -3.2821 8.5887 9.4366 43 1 0.2749 6.1765 7.1484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707466675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:16 Heat of formation + Delta-G solvation = 37.604289 kcal Electronic energy + Delta-G solvation = -24935.720674 eV Core-core repulsion = 21300.961934 eV Total energy + Delta-G solvation = -3634.758740 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.94692 -39.52446 -37.01245 -36.43671 -34.88950 -31.89072 -31.80981 -31.34306 -30.19717 -28.50230 -25.80979 -25.40627 -24.13499 -23.10055 -22.46938 -21.09204 -20.49156 -19.95987 -19.06588 -17.40595 -16.87748 -16.60820 -16.49262 -15.57531 -15.40105 -15.14002 -14.83490 -14.55819 -14.31633 -14.10506 -14.00044 -13.59951 -13.41654 -13.30198 -12.66346 -12.44669 -12.37061 -12.22661 -11.61511 -11.46647 -11.43522 -11.17840 -11.04125 -10.74886 -10.61027 -10.53223 -10.49374 -10.12907 -10.10037 -9.93534 -9.67061 -9.55634 -9.24147 -8.91727 -8.55203 -8.47863 -6.57479 -5.79534 -3.38852 -0.04875 0.39949 0.78051 1.24263 1.83608 2.69860 3.07272 3.35173 3.42227 3.42870 3.51815 3.64307 4.13754 4.45957 4.51272 4.54321 4.70292 4.79834 5.01756 5.23775 5.37697 5.44390 5.62850 5.63965 5.65833 5.79470 5.84730 5.96123 6.06141 6.12785 6.24896 6.33654 6.40541 6.43570 6.56611 6.72270 6.74435 6.89984 7.07368 7.11473 7.16071 7.54165 7.66589 7.81247 8.20036 8.51611 9.18844 9.81120 10.40072 11.20029 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.002169 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.167082 B =12908.245418 C =13124.758463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.120 3.880 15 N -0.717 5.717 16 C 0.554 3.446 17 O -0.535 6.535 18 C -0.116 4.116 19 C -0.070 4.070 20 C -0.076 4.076 21 C -0.164 4.164 22 S 0.101 5.899 23 C 0.065 3.935 24 N -0.457 5.457 25 C 0.068 3.932 26 C 0.002 3.998 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.048 0.952 30 H 0.043 0.957 31 H 0.033 0.967 32 H 0.256 0.744 33 H 0.095 0.905 34 H 0.025 0.975 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.398 0.602 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.206 0.794 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.607 7.701 15.537 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.023 3.977 13 C -0.188 4.188 14 C -0.003 4.003 15 N -0.368 5.368 16 C 0.340 3.660 17 O -0.413 6.413 18 C -0.123 4.123 19 C -0.092 4.092 20 C -0.099 4.099 21 C -0.283 4.283 22 S 0.355 5.645 23 C -0.241 4.241 24 N -0.169 5.169 25 C -0.051 4.051 26 C -0.019 4.019 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.233 0.767 40 H 0.160 0.840 41 H 0.156 0.844 42 H 0.223 0.777 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -18.230 8.157 16.256 25.751 hybrid contribution 0.145 0.476 -1.080 1.189 sum -18.085 8.634 15.176 25.138 Atomic orbital electron populations 1.22367 1.00191 0.98888 1.01071 1.20850 0.91656 0.87409 0.98738 1.43737 1.76065 1.08163 1.02475 1.18928 1.04669 1.21321 0.94185 0.92385 1.25194 0.94212 1.01298 0.98066 1.69993 1.03165 1.37280 1.42360 0.86488 0.76933 0.82378 0.81672 1.20931 1.21604 1.20735 1.20795 0.94392 0.96683 0.85785 1.22555 1.02497 0.99904 0.93811 1.21559 0.86808 0.96227 0.95745 1.46095 1.14813 1.53118 1.22727 1.18031 0.87607 0.79069 0.81329 1.90807 1.29465 1.61203 1.59794 1.19839 0.94542 1.01584 0.96314 1.21045 0.91286 0.97470 0.99411 1.19988 0.99698 0.97040 0.93165 1.24097 0.97038 1.05450 1.01739 1.84061 1.13935 1.49561 1.16902 1.28137 0.90665 1.01782 1.03488 1.66210 1.23796 1.10180 1.16676 1.19104 0.93914 1.00788 0.91335 1.20780 0.97016 0.91058 0.93073 0.94640 0.93818 0.93280 0.93893 0.94828 0.93425 0.88712 0.95613 0.92988 0.91640 0.91179 0.91657 0.76661 0.84049 0.84383 0.77738 0.83100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 10.21 37.16 0.38 -2.49 16 2 C 0.14 2.87 6.44 -4.04 -0.03 2.85 16 3 N -0.58 -13.92 2.43 -173.23 -0.42 -14.35 16 4 C -0.26 -6.89 9.45 -15.06 -0.14 -7.03 16 5 H 0.06 1.53 7.92 -52.49 -0.42 1.12 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -25.02 11.47 55.49 0.64 -24.39 16 8 Si 0.90 21.12 29.60 -169.99 -5.03 16.09 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 C 0.15 3.33 5.33 -4.04 -0.02 3.31 16 13 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 14 C 0.12 1.94 5.67 -4.04 -0.02 1.91 16 15 N -0.72 -9.67 5.50 -61.30 -0.34 -10.01 16 16 C 0.55 8.11 7.76 -12.41 -0.10 8.02 16 17 O -0.53 -9.83 16.30 5.29 0.09 -9.75 16 18 C -0.12 -1.39 5.86 -105.15 -0.62 -2.00 16 19 C -0.07 -0.63 9.47 -39.59 -0.37 -1.00 16 20 C -0.08 -0.64 9.99 -39.81 -0.40 -1.03 16 21 C -0.16 -1.58 6.56 -38.37 -0.25 -1.84 16 22 S 0.10 0.70 23.17 -107.50 -2.49 -1.79 16 23 C 0.06 0.48 12.09 51.10 0.62 1.09 16 24 N -0.46 -5.04 10.57 -13.02 -0.14 -5.18 16 25 C 0.07 0.79 6.99 -84.98 -0.59 0.20 16 26 C 0.00 0.03 9.65 -38.51 -0.37 -0.34 16 27 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.72 6.64 -51.93 -0.34 0.38 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.91 8.08 -51.93 -0.42 0.50 16 31 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.10 2.41 5.52 -51.92 -0.29 2.12 16 34 H 0.03 0.55 7.86 -51.93 -0.41 0.14 16 35 H 0.05 0.86 6.64 -51.93 -0.34 0.51 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.40 4.23 6.47 -40.82 -0.26 3.97 16 40 H 0.14 0.93 6.37 -52.49 -0.33 0.59 16 41 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.21 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.15 1.96 7.60 -52.49 -0.40 1.56 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -32.26 372.54 -9.96 -42.22 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.72 Total: 2.41 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.16 Total: -0.87 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.26 Total: -53.92 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 16 Polarization: 0.70 SS G_CDS: -2.49 Total: -1.79 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.26 -9.96 -42.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707466675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.825 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds