Wall clock time and date at job start Tue Mar 31 2020 18:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47083 * 2 1 4 4 C 1.36937 * 120.00230 * 275.30747 * 3 2 1 5 5 H 1.08000 * 119.99428 * 37.57581 * 4 3 2 6 6 C 1.38807 * 120.00555 * 217.57821 * 4 3 2 7 7 N 1.31629 * 119.99430 * 21.42385 * 6 4 3 8 8 Si 1.86792 * 120.00602 * 201.42291 * 6 4 3 9 9 H 1.48506 * 109.47109 * 59.99751 * 8 6 4 10 10 H 1.48497 * 109.47382 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46992 * 300.00260 * 8 6 4 12 12 C 1.46503 * 119.99738 * 95.30414 * 3 2 1 13 13 C 1.52996 * 109.47208 * 270.00096 * 12 3 2 14 14 C 1.53003 * 109.46790 * 180.02562 * 13 12 3 15 15 N 1.46504 * 109.46751 * 179.97438 * 14 13 12 16 16 C 1.34774 * 119.99932 * 179.97438 * 15 14 13 17 17 O 1.21584 * 120.00104 * 0.02562 * 16 15 14 18 18 C 1.47664 * 120.00074 * 180.02562 * 16 15 14 19 19 C 1.40154 * 119.85777 * 0.02962 * 18 16 15 20 20 C 1.36217 * 120.08260 * 179.97438 * 19 18 16 21 21 C 1.39579 * 120.43319 * 359.97438 * 20 19 18 22 22 S 1.76150 * 131.53476 * 180.02562 * 21 20 19 23 23 C 1.70634 * 90.85515 * 180.02562 * 22 21 20 24 24 N 1.27848 * 111.58819 * 0.02562 * 23 22 21 25 25 C 1.34745 * 117.84098 * 359.97438 * 24 23 22 26 26 C 1.38719 * 119.85147 * 180.02562 * 18 16 15 27 27 H 1.08997 * 109.47128 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47206 * 299.99866 * 1 2 3 29 29 H 1.09004 * 109.46915 * 60.00208 * 1 2 3 30 30 H 1.09000 * 109.47707 * 240.00100 * 2 1 3 31 31 H 1.09001 * 109.47554 * 119.99422 * 2 1 3 32 32 H 0.97002 * 119.99544 * 180.02562 * 7 6 4 33 33 H 1.09008 * 109.46782 * 150.00327 * 12 3 2 34 34 H 1.08996 * 109.47241 * 30.01090 * 12 3 2 35 35 H 1.08994 * 109.47034 * 60.00396 * 13 12 3 36 36 H 1.09000 * 109.47457 * 300.00000 * 13 12 3 37 37 H 1.09001 * 109.47098 * 60.00680 * 14 13 12 38 38 H 1.08995 * 109.47689 * 300.00101 * 14 13 12 39 39 H 0.97000 * 120.00202 * 0.02562 * 15 14 13 40 40 H 1.08002 * 119.95734 * 359.97438 * 19 18 16 41 41 H 1.07998 * 119.78379 * 180.28144 * 20 19 18 42 42 H 1.08002 * 124.20137 * 180.02562 * 23 22 21 43 43 H 1.07995 * 119.98143 * 0.05140 * 26 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1431 2.0634 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2111 2.9290 -1.3729 7 7 4.3026 2.7981 -0.6489 8 14 3.0994 4.2795 -2.6585 9 1 1.9627 5.1786 -2.3345 10 1 4.3618 5.0615 -2.6660 11 1 2.8845 3.6725 -3.9966 12 6 2.3730 2.0328 1.2634 13 6 1.1424 2.7383 1.8365 14 6 1.5131 3.4192 3.1556 15 7 0.3348 4.0952 3.7041 16 6 0.4245 4.7663 4.8695 17 8 1.4834 4.8110 5.4653 18 6 -0.7632 5.4473 5.4226 19 6 -1.9825 5.3933 4.7336 20 6 -3.0812 6.0194 5.2400 21 6 -3.0039 6.7179 6.4460 22 16 -4.2157 7.6172 7.3547 23 6 -3.0671 7.9998 8.5571 24 7 -1.9205 7.5028 8.2875 25 6 -1.7959 6.7870 7.1527 26 6 -0.6673 6.1375 6.6221 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 5.0488 3.4033 -0.7829 33 1 3.1615 2.7643 1.0860 34 1 2.7254 1.2835 1.9721 35 1 0.3540 2.0069 2.0138 36 1 0.7901 3.4877 1.1277 37 1 2.3014 4.1507 2.9779 38 1 1.8656 2.6702 3.8646 39 1 -0.5101 4.0593 3.2289 40 1 -2.0510 4.8547 3.8000 41 1 -4.0194 5.9709 4.7074 42 1 -3.2821 8.5887 9.4366 43 1 0.2749 6.1765 7.1484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707466675.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:15 Heat of formation + Delta-G solvation = 17.399263 kcal Electronic energy + Delta-G solvation = -24936.596830 eV Core-core repulsion = 21300.961934 eV Total energy + Delta-G solvation = -3635.634896 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.76426 -40.58522 -38.21288 -37.72244 -36.28956 -33.79879 -33.03338 -32.27498 -31.12860 -30.10547 -27.26729 -26.25599 -25.59005 -24.27239 -23.25760 -22.54639 -22.02539 -21.24386 -19.81776 -18.61291 -18.30915 -17.53302 -17.38224 -17.03625 -16.61612 -16.43823 -15.96456 -15.69531 -15.65062 -15.16653 -15.02979 -14.95272 -14.67831 -14.24031 -14.20509 -14.03068 -13.25366 -13.22810 -13.09543 -12.98221 -12.71170 -12.69603 -12.53332 -12.34710 -12.17487 -12.12041 -11.92031 -11.45725 -11.26070 -11.24897 -11.16218 -10.74238 -10.46911 -10.23352 -9.89984 -9.21614 -8.52443 -7.78898 -5.42996 -0.72665 -0.43212 0.18358 0.61880 1.15776 1.47200 1.49872 1.55977 1.72637 1.98014 2.52710 2.62535 2.97154 3.26227 3.43851 3.58652 3.68111 3.89578 4.03548 4.09554 4.17870 4.30558 4.45046 4.48182 4.55993 4.63200 4.75660 4.79200 4.90825 4.93299 4.94899 5.02384 5.05678 5.07311 5.18976 5.33382 5.36768 5.43400 5.49037 5.63263 5.72045 5.87149 6.43835 6.48561 6.50216 7.08443 7.21188 7.91231 8.43648 9.15592 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.017375 B = 0.002169 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.167082 B =12908.245418 C =13124.758463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.262 4.262 5 H 0.056 0.944 6 C -0.037 4.037 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.276 1.276 10 H -0.298 1.298 11 H -0.275 1.275 12 C 0.149 3.851 13 C -0.123 4.123 14 C 0.132 3.868 15 N -0.703 5.703 16 C 0.554 3.446 17 O -0.582 6.582 18 C -0.124 4.124 19 C -0.069 4.069 20 C -0.066 4.066 21 C -0.183 4.183 22 S 0.165 5.835 23 C 0.070 3.930 24 N -0.502 5.502 25 C 0.050 3.950 26 C -0.021 4.021 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.027 0.973 31 H 0.044 0.956 32 H 0.250 0.750 33 H 0.059 0.941 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.415 0.585 40 H 0.169 0.831 41 H 0.174 0.826 42 H 0.243 0.757 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.759 8.161 15.590 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.392 4.392 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.224 1.224 11 H -0.201 1.201 12 C 0.023 3.977 13 C -0.163 4.163 14 C 0.007 3.993 15 N -0.355 5.355 16 C 0.342 3.658 17 O -0.463 6.463 18 C -0.131 4.131 19 C -0.091 4.091 20 C -0.088 4.088 21 C -0.303 4.303 22 S 0.420 5.580 23 C -0.234 4.234 24 N -0.216 5.216 25 C -0.070 4.070 26 C -0.043 4.043 27 H 0.082 0.918 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.082 0.918 39 H 0.254 0.746 40 H 0.186 0.814 41 H 0.192 0.808 42 H 0.259 0.741 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -22.457 8.606 16.297 29.051 hybrid contribution 1.327 0.329 -0.997 1.692 sum -21.130 8.935 15.300 27.575 Atomic orbital electron populations 1.22165 0.97098 1.00776 1.00960 1.21005 0.93972 0.85682 0.98546 1.43983 1.76470 1.09540 1.02247 1.19142 1.04037 1.21176 0.94880 0.92615 1.25859 0.94039 1.03402 1.00157 1.70133 1.03786 1.38095 1.44269 0.85563 0.76521 0.79943 0.79777 1.20174 1.22412 1.20095 1.20700 0.95344 0.96127 0.85574 1.22174 1.00764 0.99643 0.93691 1.21219 0.87259 0.95628 0.95155 1.45837 1.14709 1.52461 1.22492 1.18470 0.87911 0.78490 0.80954 1.90779 1.31517 1.62903 1.61111 1.19602 0.94547 1.02230 0.96675 1.21282 0.90117 0.97672 1.00036 1.20401 1.00659 0.95249 0.92457 1.24518 0.97532 1.05850 1.02365 1.83853 1.11602 1.47573 1.15013 1.28857 0.89935 1.00219 1.04414 1.66239 1.25875 1.12064 1.17381 1.19164 0.94367 1.01259 0.92177 1.20683 0.96966 0.92777 0.93829 0.91751 0.92803 0.94417 0.95406 0.93780 0.94078 0.92315 0.95419 0.90775 0.92642 0.93541 0.91848 0.74623 0.81352 0.80842 0.74134 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.81 10.21 71.98 0.73 -4.08 16 2 C 0.13 5.33 6.44 86.38 0.56 5.89 16 3 N -0.60 -28.58 2.43 -701.99 -1.71 -30.29 16 4 C -0.26 -13.84 9.45 84.03 0.79 -13.04 16 5 H 0.06 2.93 7.92 -2.91 -0.02 2.91 16 6 C -0.04 -2.03 4.95 84.86 0.42 -1.61 16 7 N -0.92 -53.43 11.47 21.65 0.25 -53.18 16 8 Si 0.95 43.85 29.60 68.60 2.03 45.88 16 9 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 12 C 0.15 6.67 5.33 86.38 0.46 7.13 16 13 C -0.12 -4.25 5.65 30.59 0.17 -4.08 16 14 C 0.13 4.29 5.67 86.38 0.49 4.79 16 15 N -0.70 -18.55 5.50 -466.13 -2.57 -21.11 16 16 C 0.55 16.61 7.76 86.73 0.67 17.28 16 17 O -0.58 -22.70 16.30 -3.98 -0.06 -22.76 16 18 C -0.12 -2.97 5.86 -20.21 -0.12 -3.09 16 19 C -0.07 -1.09 9.47 22.26 0.21 -0.88 16 20 C -0.07 -0.88 9.99 22.12 0.22 -0.66 16 21 C -0.18 -3.13 6.56 23.05 0.15 -2.98 16 22 S 0.16 1.71 23.17 -56.49 -1.31 0.40 16 23 C 0.07 0.87 12.09 130.82 1.58 2.45 16 24 N -0.50 -10.85 10.57 -194.89 -2.06 -12.91 16 25 C 0.05 1.15 6.99 39.73 0.28 1.43 16 26 C -0.02 -0.55 9.65 22.97 0.22 -0.32 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 1.60 6.64 -2.39 -0.02 1.59 16 29 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 31 H 0.04 1.65 7.83 -2.39 -0.02 1.63 16 32 H 0.25 14.22 8.31 -92.71 -0.77 13.44 16 33 H 0.06 3.10 5.52 -2.38 -0.01 3.09 16 34 H 0.03 1.19 7.86 -2.39 -0.02 1.17 16 35 H 0.07 2.26 6.64 -2.39 -0.02 2.24 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.42 7.93 6.47 -92.71 -0.60 7.33 16 40 H 0.17 1.61 6.37 -2.91 -0.02 1.59 16 41 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 42 H 0.24 0.80 8.06 -2.91 -0.02 0.77 16 43 H 0.13 3.77 7.60 -2.91 -0.02 3.75 16 Total: -1.00 -73.45 372.54 1.86 -71.58 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.44 Total: 14.16 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.85 Total: 8.23 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -6.09 Total: -117.49 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.06 Total: -22.76 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -1.31 Total: 0.40 kcal Total: -73.45 1.86 -71.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707466675.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.984 kcal (2) G-P(sol) polarization free energy of solvation -73.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds