Wall clock time and date at job start Tue Mar 31 2020 18:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 6 6 C 1.34771 * 120.00040 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00244 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99782 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46981 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99899 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99782 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99975 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99843 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99878 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47111 * 89.99771 * 14 12 10 16 16 H 1.48501 * 109.46959 * 209.99446 * 14 12 10 17 17 H 1.48493 * 109.47056 * 329.99873 * 14 12 10 18 18 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 19 19 C 1.46903 * 110.99807 * 275.00039 * 18 2 1 20 20 C 1.50705 * 109.46848 * 180.02562 * 19 18 2 21 21 C 1.38380 * 119.92142 * 269.72296 * 20 19 18 22 22 C 1.38342 * 120.30353 * 179.76469 * 21 20 19 23 23 C 1.37964 * 120.15061 * 0.51822 * 22 21 20 24 24 C 1.39619 * 119.84541 * 359.73595 * 23 22 21 25 25 C 1.43199 * 120.14904 * 179.97438 * 24 23 22 26 26 N 7.77785 * 133.92451 * 104.09730 * 2 1 3 27 27 C 1.37918 * 119.92213 * 90.00082 * 20 19 18 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 32 32 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 33 33 H 0.97002 * 119.99507 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.46909 * 299.99869 * 8 6 5 35 35 H 1.08993 * 109.47208 * 59.99748 * 8 6 5 36 36 H 0.97001 * 119.99324 * 179.97438 * 13 12 10 37 37 H 1.00902 * 111.00121 * 38.95441 * 18 2 1 38 38 H 1.09001 * 109.47143 * 300.00154 * 19 18 2 39 39 H 1.08998 * 109.47112 * 60.00049 * 19 18 2 40 40 H 1.08003 * 119.85040 * 0.02562 * 21 20 19 41 41 H 1.08002 * 119.92353 * 180.25229 * 22 21 20 42 42 H 1.08001 * 120.07763 * 179.76885 * 23 22 21 43 43 H 1.08001 * 120.08108 * 359.95790 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5699 -1.8847 -3.1391 8 6 5.6749 -1.5376 -2.1302 9 16 6.2781 -2.3919 -3.6075 10 6 8.0099 -2.3787 -3.2828 11 1 8.3862 -1.9247 -2.3779 12 6 8.8906 -2.9508 -4.1905 13 7 8.4319 -3.5036 -5.2935 14 14 10.7266 -2.9361 -3.8466 15 1 11.0988 -4.1601 -3.0925 16 1 11.4705 -2.9009 -5.1313 17 1 11.0700 -1.7358 -3.0426 18 7 2.0197 -0.6925 1.1994 19 6 2.0825 0.2226 2.3469 20 6 2.5886 -0.5216 3.5557 21 6 1.6937 -1.1477 4.4055 22 6 2.1499 -1.8372 5.5147 23 6 3.5012 -1.8958 5.7867 24 6 4.4093 -1.2619 4.9365 25 6 5.8132 -1.3181 5.2130 26 7 6.9256 -1.3645 5.4333 27 6 3.9421 -0.5722 3.8156 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2952 32 1 1.7517 -0.1582 -2.1370 33 1 3.9825 -0.4620 -0.4320 34 1 6.1098 -0.5391 -2.0844 35 1 5.9629 -2.1004 -1.2423 36 1 9.0474 -3.9030 -5.9279 37 1 1.4496 -1.4980 1.4100 38 1 2.7589 1.0462 2.1182 39 1 1.0871 0.6162 2.5525 40 1 0.6345 -1.1015 4.1995 41 1 1.4463 -2.3270 6.1716 42 1 3.8558 -2.4312 6.6551 43 1 4.6392 -0.0799 3.1537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713295503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:43 Heat of formation + Delta-G solvation = 11.187315 kcal Electronic energy + Delta-G solvation = -24335.393592 eV Core-core repulsion = 20699.489326 eV Total energy + Delta-G solvation = -3635.904266 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12898 -39.16326 -37.65033 -36.69427 -34.24858 -32.65934 -32.37429 -31.74886 -30.14492 -29.16380 -26.14054 -25.49047 -25.12955 -24.28874 -22.17894 -21.29869 -20.11959 -18.79399 -17.75383 -16.83484 -16.45439 -16.17258 -16.12425 -16.03074 -15.14367 -14.81499 -14.75447 -14.45956 -14.34559 -14.18064 -13.88133 -13.48868 -13.39340 -13.22434 -13.16679 -12.86057 -12.81086 -12.63657 -12.48872 -12.36945 -12.10344 -11.88545 -11.68484 -11.41011 -11.17836 -11.01709 -10.96952 -10.71185 -9.75811 -9.43699 -9.39100 -9.29023 -9.01740 -8.83834 -8.69224 -8.16799 -6.43528 -6.16689 -3.86326 0.33366 0.80521 2.37563 2.55577 3.13201 3.23404 3.26583 3.32238 3.36885 3.40056 3.51322 3.76936 3.91453 4.25011 4.25952 4.34272 4.52294 4.53310 4.68158 4.72026 4.77582 4.90997 5.03622 5.08010 5.18453 5.25618 5.30172 5.33076 5.40850 5.46179 5.63747 5.67546 5.73596 5.80035 5.81300 5.92015 5.98254 5.99643 6.23928 6.29711 6.52704 6.76874 6.96638 7.17943 7.64989 7.91952 8.40662 8.76769 9.28865 10.90760 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009083 B = 0.002736 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.001762 B =10230.973861 C =12966.280231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.072 3.928 3 H 0.086 0.914 4 C 0.134 3.866 5 N -0.725 5.725 6 C 0.530 3.470 7 O -0.525 6.525 8 C -0.152 4.152 9 S -0.062 6.062 10 C -0.534 4.534 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.917 3.083 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.678 5.678 19 C 0.097 3.903 20 C -0.084 4.084 21 C -0.084 4.084 22 C -0.120 4.120 23 C -0.071 4.071 24 C -0.027 4.027 25 C 0.250 3.750 26 N -0.411 5.411 27 C -0.047 4.047 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.402 0.598 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.268 0.732 37 H 0.347 0.653 38 H 0.085 0.915 39 H 0.044 0.956 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.132 0.868 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.045 9.070 22.973 31.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.038 4.038 3 H 0.104 0.896 4 C 0.009 3.991 5 N -0.379 5.379 6 C 0.316 3.684 7 O -0.400 6.400 8 C -0.302 4.302 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.090 0.910 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.744 3.256 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 N -0.310 5.310 19 C -0.032 4.032 20 C -0.085 4.085 21 C -0.104 4.104 22 C -0.138 4.138 23 C -0.091 4.091 24 C -0.030 4.030 25 C -0.065 4.065 26 N -0.086 5.086 27 C -0.068 4.068 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.166 0.834 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -18.617 8.237 21.382 29.523 hybrid contribution 0.724 0.718 1.852 2.114 sum -17.893 8.955 23.234 30.663 Atomic orbital electron populations 1.22418 0.96060 1.02783 1.02698 1.21857 0.93377 0.98422 0.90185 0.89577 1.21225 0.81439 1.00558 0.95896 1.45767 1.06664 1.61391 1.24071 1.20267 0.89419 0.76919 0.81796 1.90689 1.69910 1.46423 1.32958 1.23509 0.93875 1.05444 1.07418 1.85357 1.04469 1.73187 1.20506 1.22878 0.91625 1.44070 1.09628 0.90988 1.24985 0.99522 0.94613 0.94474 1.70025 1.35335 1.35594 1.09426 0.86185 0.82961 0.78642 0.77826 1.20285 1.20778 1.19702 1.60563 1.58102 1.09442 1.02858 1.20942 0.99971 0.94599 0.87664 1.19668 0.92878 0.99431 0.96473 1.21305 0.99821 0.95358 0.93881 1.21060 0.95081 0.99744 0.97951 1.21209 0.92821 0.96860 0.98241 1.16006 0.84871 1.03798 0.98335 1.25672 0.92736 0.94091 0.94036 1.81258 1.11820 1.07866 1.07667 1.21109 0.95544 0.95809 0.94329 0.91879 0.92341 0.91365 0.91823 0.91445 0.76312 0.89457 0.89318 0.92251 0.83360 0.89651 0.93743 0.85508 0.84928 0.85045 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.89 9.16 37.16 0.34 -0.55 16 2 C 0.07 0.46 2.75 -67.71 -0.19 0.27 16 3 H 0.09 0.52 7.80 -51.93 -0.40 0.12 16 4 C 0.13 1.43 5.37 -4.04 -0.02 1.41 16 5 N -0.72 -9.60 5.39 -60.29 -0.32 -9.93 16 6 C 0.53 10.06 7.85 -10.99 -0.09 9.97 16 7 O -0.52 -12.09 15.86 5.56 0.09 -12.00 16 8 C -0.15 -3.16 6.16 36.01 0.22 -2.94 16 9 S -0.06 -1.72 20.57 -107.50 -2.21 -3.93 16 10 C -0.53 -15.56 9.50 30.94 0.29 -15.27 16 11 H 0.07 2.00 7.80 -52.48 -0.41 1.59 16 12 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 13 N -0.87 -26.64 13.22 55.49 0.73 -25.91 16 14 Si 0.92 21.95 29.55 -169.99 -5.02 16.93 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 18 N -0.68 -4.06 5.68 -107.99 -0.61 -4.67 16 19 C 0.10 0.43 5.61 -4.97 -0.03 0.41 16 20 C -0.08 -0.44 5.39 -104.68 -0.56 -1.00 16 21 C -0.08 -0.35 9.69 -39.49 -0.38 -0.73 16 22 C -0.12 -0.50 10.03 -39.64 -0.40 -0.90 16 23 C -0.07 -0.38 9.76 -39.17 -0.38 -0.77 16 24 C -0.03 -0.20 5.73 -106.93 -0.61 -0.81 16 25 C 0.25 2.53 15.33 -22.51 -0.34 2.19 16 26 N -0.41 -5.36 18.53 41.80 0.77 -4.59 16 27 C -0.05 -0.31 9.40 -39.17 -0.37 -0.68 16 28 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 29 H 0.06 0.23 7.45 -51.93 -0.39 -0.16 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.40 4.47 8.14 -40.82 -0.33 4.14 16 34 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 35 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.35 1.99 8.46 -39.29 -0.33 1.66 16 38 H 0.09 0.38 8.00 -51.93 -0.42 -0.03 16 39 H 0.04 0.15 7.38 -51.93 -0.38 -0.23 16 40 H 0.13 0.29 8.06 -52.48 -0.42 -0.13 16 41 H 0.13 0.27 8.06 -52.49 -0.42 -0.15 16 42 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 43 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -36.78 391.75 -9.31 -46.10 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -6.03 Total: -0.56 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -2.61 Total: -7.35 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.57 Total: -45.09 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: -1.72 SS G_CDS: -2.21 Total: -3.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.78 -9.31 -46.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713295503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.283 kcal (2) G-P(sol) polarization free energy of solvation -36.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds