Wall clock time and date at job start Tue Mar 31 2020 18:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47127 * 240.00426 * 2 1 3 5 5 N 1.46503 * 109.47269 * 184.99793 * 4 2 1 6 6 C 1.34771 * 120.00040 * 179.97438 * 5 4 2 7 7 O 1.21280 * 120.00244 * 359.97438 * 6 5 4 8 8 C 1.50701 * 119.99782 * 180.02562 * 6 5 4 9 9 S 1.81002 * 109.46981 * 179.97438 * 8 6 5 10 10 C 1.76201 * 99.99899 * 179.97438 * 9 8 6 11 11 H 1.08003 * 119.99782 * 359.97438 * 10 9 8 12 12 C 1.38802 * 119.99975 * 180.02562 * 10 9 8 13 13 N 1.31631 * 119.99843 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99878 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47111 * 89.99771 * 14 12 10 16 16 H 1.48501 * 109.46959 * 209.99446 * 14 12 10 17 17 H 1.48493 * 109.47056 * 329.99873 * 14 12 10 18 18 N 1.46899 * 109.47163 * 120.00236 * 2 1 3 19 19 C 1.46903 * 110.99807 * 275.00039 * 18 2 1 20 20 C 1.50705 * 109.46848 * 180.02562 * 19 18 2 21 21 C 1.38380 * 119.92142 * 269.72296 * 20 19 18 22 22 C 1.38342 * 120.30353 * 179.76469 * 21 20 19 23 23 C 1.37964 * 120.15061 * 0.51822 * 22 21 20 24 24 C 1.39619 * 119.84541 * 359.73595 * 23 22 21 25 25 C 1.43199 * 120.14904 * 179.97438 * 24 23 22 26 26 N 7.77785 * 133.92451 * 104.09730 * 2 1 3 27 27 C 1.37918 * 119.92213 * 90.00082 * 20 19 18 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 31 31 H 1.09002 * 109.47196 * 304.99671 * 4 2 1 32 32 H 1.09001 * 109.47630 * 64.99767 * 4 2 1 33 33 H 0.97002 * 119.99507 * 359.97438 * 5 4 2 34 34 H 1.09002 * 109.46909 * 299.99869 * 8 6 5 35 35 H 1.08993 * 109.47208 * 59.99748 * 8 6 5 36 36 H 0.97001 * 119.99324 * 179.97438 * 13 12 10 37 37 H 1.00902 * 111.00121 * 38.95441 * 18 2 1 38 38 H 1.09001 * 109.47143 * 300.00154 * 19 18 2 39 39 H 1.08998 * 109.47112 * 60.00049 * 19 18 2 40 40 H 1.08003 * 119.85040 * 0.02562 * 21 20 19 41 41 H 1.08002 * 119.92353 * 180.25229 * 22 21 20 42 42 H 1.08001 * 120.07763 * 179.76885 * 23 22 21 43 43 H 1.08001 * 120.08108 * 359.95790 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2493 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5699 -1.8847 -3.1391 8 6 5.6749 -1.5376 -2.1302 9 16 6.2781 -2.3919 -3.6075 10 6 8.0099 -2.3787 -3.2828 11 1 8.3862 -1.9247 -2.3779 12 6 8.8906 -2.9508 -4.1905 13 7 8.4319 -3.5036 -5.2935 14 14 10.7266 -2.9361 -3.8466 15 1 11.0988 -4.1601 -3.0925 16 1 11.4705 -2.9009 -5.1313 17 1 11.0700 -1.7358 -3.0426 18 7 2.0197 -0.6925 1.1994 19 6 2.0825 0.2226 2.3469 20 6 2.5886 -0.5216 3.5557 21 6 1.6937 -1.1477 4.4055 22 6 2.1499 -1.8372 5.5147 23 6 3.5012 -1.8958 5.7867 24 6 4.4093 -1.2619 4.9365 25 6 5.8132 -1.3181 5.2130 26 7 6.9256 -1.3645 5.4333 27 6 3.9421 -0.5722 3.8156 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.6055 -1.7197 -1.2952 32 1 1.7517 -0.1582 -2.1370 33 1 3.9825 -0.4620 -0.4320 34 1 6.1098 -0.5391 -2.0844 35 1 5.9629 -2.1004 -1.2423 36 1 9.0474 -3.9030 -5.9279 37 1 1.4496 -1.4980 1.4100 38 1 2.7589 1.0462 2.1182 39 1 1.0871 0.6162 2.5525 40 1 0.6345 -1.1015 4.1995 41 1 1.4463 -2.3270 6.1716 42 1 3.8558 -2.4312 6.6551 43 1 4.6392 -0.0799 3.1537 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713295503.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:42 Heat of formation + Delta-G solvation = -14.457794 kcal Electronic energy + Delta-G solvation = -24336.505648 eV Core-core repulsion = 20699.489326 eV Total energy + Delta-G solvation = -3637.016322 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.66739 -40.40013 -38.38679 -37.49449 -35.24163 -34.58829 -33.39209 -32.18125 -31.15352 -30.14682 -27.73096 -26.77202 -25.80058 -24.78209 -22.56244 -21.94736 -21.54572 -19.80638 -19.29926 -17.67861 -17.40579 -17.15570 -16.88849 -16.88028 -16.65469 -16.09738 -15.97111 -15.54838 -15.09286 -14.96387 -14.85276 -14.51805 -14.33736 -14.14536 -14.09609 -13.90257 -13.68110 -13.49058 -13.16757 -13.15920 -13.06824 -12.89920 -12.86714 -12.63819 -12.51638 -12.26787 -11.93106 -11.74614 -11.66925 -11.15121 -10.88497 -10.27244 -9.96153 -9.85748 -9.78922 -9.25893 -8.65715 -8.35282 -6.12530 -0.13472 0.42266 1.27726 1.40661 1.46622 1.58296 1.60719 1.70670 1.95191 2.26449 2.42418 2.84295 2.91963 2.98497 3.32646 3.39935 3.85635 3.92241 4.01641 4.06607 4.19670 4.22340 4.32237 4.35600 4.40940 4.44303 4.53372 4.67401 4.71516 4.76940 4.88499 4.94052 5.01254 5.07057 5.11890 5.34743 5.39879 5.41153 5.45478 5.58673 5.60532 5.93986 6.10755 6.19361 6.43734 6.51976 6.66608 7.06090 7.37070 8.74012 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009083 B = 0.002736 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3082.001762 B =10230.973861 C =12966.280231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.097 0.903 4 C 0.129 3.871 5 N -0.696 5.696 6 C 0.530 3.470 7 O -0.572 6.572 8 C -0.129 4.129 9 S -0.149 6.149 10 C -0.547 4.547 11 H 0.079 0.921 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.997 3.003 15 H -0.269 1.269 16 H -0.275 1.275 17 H -0.260 1.260 18 N -0.690 5.690 19 C 0.101 3.899 20 C -0.088 4.088 21 C -0.074 4.074 22 C -0.119 4.119 23 C -0.071 4.071 24 C -0.052 4.052 25 C 0.275 3.725 26 N -0.476 5.476 27 C -0.056 4.056 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.416 0.584 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.271 0.729 37 H 0.350 0.650 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.141 0.859 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.582 10.208 25.276 34.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.024 4.024 3 H 0.115 0.885 4 C 0.005 3.995 5 N -0.349 5.349 6 C 0.316 3.684 7 O -0.451 6.451 8 C -0.280 4.280 9 S 0.078 5.922 10 C -0.695 4.695 11 H 0.097 0.903 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.818 3.182 15 H -0.194 1.194 16 H -0.200 1.200 17 H -0.184 1.184 18 N -0.322 5.322 19 C -0.027 4.027 20 C -0.088 4.088 21 C -0.093 4.093 22 C -0.136 4.136 23 C -0.092 4.092 24 C -0.055 4.055 25 C -0.039 4.039 26 N -0.152 5.152 27 C -0.077 4.077 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.253 0.747 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.080 0.920 37 H 0.170 0.830 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.171 0.829 41 H 0.177 0.823 42 H 0.159 0.841 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -20.178 9.409 23.746 32.551 hybrid contribution 0.998 0.401 1.219 1.626 sum -19.180 9.810 24.965 32.975 Atomic orbital electron populations 1.22364 0.94460 1.02999 1.03537 1.21677 0.94362 0.98016 0.88350 0.88521 1.21471 0.79194 1.00548 0.98297 1.45550 1.07954 1.58861 1.22551 1.19982 0.88652 0.77363 0.82430 1.90676 1.70388 1.48973 1.35105 1.23360 0.95436 1.05406 1.03823 1.85497 1.05581 1.75145 1.25941 1.23195 0.91885 1.44322 1.10059 0.90266 1.26099 1.05092 0.93836 0.94026 1.70181 1.37352 1.36525 1.10602 0.84985 0.75965 0.79191 0.78035 1.19415 1.20010 1.18403 1.60480 1.58443 1.10002 1.03278 1.20946 1.01089 0.94062 0.86597 1.19768 0.92276 0.99711 0.97055 1.21657 1.00991 0.93705 0.92996 1.21391 0.94716 0.99290 0.98239 1.21421 0.93320 0.96308 0.98116 1.16146 0.83518 1.06007 0.99847 1.26196 0.93178 0.92243 0.92287 1.81260 1.13626 1.10378 1.09907 1.21175 0.96430 0.95968 0.94130 0.92017 0.90358 0.91650 0.92952 0.92158 0.74671 0.87613 0.87889 0.91960 0.83022 0.89585 0.91641 0.82875 0.82337 0.84087 0.85117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.16 71.98 0.66 -0.51 16 2 C 0.09 0.86 2.75 44.92 0.12 0.99 16 3 H 0.10 0.83 7.80 -2.39 -0.02 0.81 16 4 C 0.13 2.58 5.37 86.38 0.46 3.04 16 5 N -0.70 -17.48 5.39 -463.06 -2.50 -19.98 16 6 C 0.53 20.04 7.85 87.66 0.69 20.72 16 7 O -0.57 -26.98 15.86 -3.03 -0.05 -27.02 16 8 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 9 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 10 C -0.55 -32.21 9.50 67.95 0.65 -31.56 16 11 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 12 C 0.01 0.83 5.49 84.86 0.47 1.30 16 13 N -0.91 -56.98 13.22 21.65 0.29 -56.70 16 14 Si 1.00 45.01 29.55 68.60 2.03 47.04 16 15 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 17 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 18 N -0.69 -6.14 5.68 -495.56 -2.81 -8.95 16 19 C 0.10 0.55 5.61 85.56 0.48 1.03 16 20 C -0.09 -0.65 5.39 -19.90 -0.11 -0.76 16 21 C -0.07 -0.32 9.69 22.33 0.22 -0.11 16 22 C -0.12 -0.58 10.03 22.23 0.22 -0.35 16 23 C -0.07 -0.64 9.76 22.54 0.22 -0.42 16 24 C -0.05 -0.71 5.73 -21.36 -0.12 -0.83 16 25 C 0.28 5.70 15.33 88.34 1.35 7.05 16 26 N -0.48 -12.95 18.53 18.99 0.35 -12.60 16 27 C -0.06 -0.66 9.40 22.54 0.21 -0.44 16 28 H 0.06 0.46 8.13 -2.39 -0.02 0.44 16 29 H 0.08 0.27 7.45 -2.39 -0.02 0.25 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.42 8.30 8.14 -92.71 -0.75 7.55 16 34 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 35 H 0.10 3.95 8.14 -2.40 -0.02 3.94 16 36 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 37 H 0.35 2.88 8.46 -89.69 -0.76 2.12 16 38 H 0.09 0.49 8.00 -2.39 -0.02 0.47 16 39 H 0.07 0.12 7.38 -2.39 -0.02 0.11 16 40 H 0.15 -0.11 8.06 -2.91 -0.02 -0.13 16 41 H 0.16 -0.04 8.06 -2.91 -0.02 -0.06 16 42 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.13 1.57 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -83.80 391.75 1.64 -82.16 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -0.47 Total: 11.46 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 5.96 Total: -5.76 kcal Atomic # 7 Polarization: -93.55 SS G_CDS: -4.67 Total: -98.22 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.02 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -83.80 1.64 -82.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713295503.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.702 kcal (2) G-P(sol) polarization free energy of solvation -83.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds