Wall clock time and date at job start Tue Mar 31 2020 18:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 N 1.46498 * 109.47327 * 174.99801 * 4 2 1 6 6 C 1.34766 * 120.00168 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99939 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00112 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47247 * 180.02562 * 8 6 5 10 10 C 1.76202 * 100.00188 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99900 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00156 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99802 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.46854 * 90.00130 * 14 12 10 16 16 H 1.48496 * 109.47252 * 209.99998 * 14 12 10 17 17 H 1.48500 * 109.47043 * 330.00534 * 14 12 10 18 18 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 19 19 C 1.46899 * 111.00029 * 85.00270 * 18 2 1 20 20 C 1.50703 * 109.47107 * 179.97438 * 19 18 2 21 21 C 1.38384 * 119.92327 * 269.72027 * 20 19 18 22 22 C 1.38343 * 120.30442 * 179.76449 * 21 20 19 23 23 C 1.37964 * 120.14922 * 0.51422 * 22 21 20 24 24 C 1.39611 * 119.84795 * 359.74506 * 23 22 21 25 25 C 1.43202 * 120.15210 * 179.97438 * 24 23 22 26 26 N 7.77798 * 82.50716 * 247.00687 * 2 1 3 27 27 C 1.37924 * 119.92387 * 89.99571 * 20 19 18 28 28 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 29 29 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 31 31 H 1.08995 * 109.46473 * 295.00096 * 4 2 1 32 32 H 1.09002 * 109.47052 * 54.99739 * 4 2 1 33 33 H 0.97004 * 119.99521 * 359.97438 * 5 4 2 34 34 H 1.08995 * 109.47469 * 299.99950 * 8 6 5 35 35 H 1.09002 * 109.47277 * 60.00340 * 8 6 5 36 36 H 0.97000 * 119.99519 * 179.97438 * 13 12 10 37 37 H 1.00908 * 110.99583 * 208.95182 * 18 2 1 38 38 H 1.09002 * 109.47043 * 299.99792 * 19 18 2 39 39 H 1.09001 * 109.47354 * 59.99854 * 19 18 2 40 40 H 1.08000 * 119.84734 * 0.02562 * 21 20 19 41 41 H 1.08005 * 119.92273 * 180.26050 * 22 21 20 42 42 H 1.08002 * 120.07601 * 179.77171 * 23 22 21 43 43 H 1.08001 * 120.07982 * 359.96261 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8266 1.1905 6 6 4.1730 -1.4285 2.1910 7 8 3.5699 -1.8836 3.1397 8 6 5.6750 -1.5362 2.1309 9 16 6.2783 -2.3897 3.6086 10 6 8.0102 -2.3756 3.2845 11 1 8.3864 -1.9224 2.3793 12 6 8.8908 -2.9468 4.1926 13 7 8.4322 -3.4996 5.2957 14 14 10.7269 -2.9324 3.8486 15 1 11.3277 -1.7000 4.4194 16 1 11.3565 -4.1243 4.4714 17 1 10.9559 -2.9610 2.3817 18 7 2.0196 -0.6925 -1.1995 19 6 2.0824 0.2227 -2.3469 20 6 2.5884 -0.5214 -3.5558 21 6 3.9461 -0.5673 -3.8198 22 6 4.4196 -1.2522 -4.9246 23 6 3.5389 -1.8856 -5.7771 24 6 2.1676 -1.8387 -5.5198 25 6 1.2476 -2.4934 -6.4006 26 7 0.5157 -3.0123 -7.0989 27 6 1.6969 -1.1501 -4.3997 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.7516 -0.1585 2.1369 32 1 1.6053 -1.7199 1.2950 33 1 3.9823 -0.4629 0.4315 34 1 5.9637 -2.0991 1.2433 35 1 6.1093 -0.5375 2.0850 36 1 9.0477 -3.8991 5.9301 37 1 2.9173 -1.1205 -1.0288 38 1 1.0870 0.6165 -2.5525 39 1 2.7588 1.0463 -2.1182 40 1 4.6395 -0.0698 -3.1580 41 1 5.4808 -1.2876 -5.1225 42 1 3.9096 -2.4168 -6.6413 43 1 0.6373 -1.1103 -4.1946 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713295504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:47 Heat of formation + Delta-G solvation = 13.789901 kcal Electronic energy + Delta-G solvation = -24219.718402 eV Core-core repulsion = 20583.926992 eV Total energy + Delta-G solvation = -3635.791410 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.15678 -39.41430 -37.64677 -36.74128 -34.31803 -32.70341 -32.45303 -31.75455 -30.26992 -29.35885 -26.31850 -25.55180 -25.09553 -24.31049 -22.16000 -20.96467 -20.47871 -18.82534 -17.93292 -16.89042 -16.70500 -16.28731 -16.20769 -16.04522 -15.24833 -14.91711 -14.83025 -14.70774 -14.35876 -14.19199 -13.90598 -13.52631 -13.37591 -13.30799 -13.07366 -12.94595 -12.76000 -12.65056 -12.57486 -12.33896 -12.05625 -11.88739 -11.76612 -11.40164 -11.18853 -11.08880 -11.05165 -10.78494 -9.84726 -9.47581 -9.44157 -9.38585 -9.10051 -8.98572 -8.86671 -8.26840 -6.53077 -6.24250 -3.95125 0.31085 0.80159 2.26608 2.50052 2.96447 3.03537 3.20103 3.25311 3.28807 3.34654 3.44620 3.63411 3.85026 4.17579 4.22458 4.35182 4.44307 4.53724 4.69900 4.76514 4.85191 4.97675 5.04169 5.09372 5.10969 5.11878 5.32177 5.43167 5.45080 5.50339 5.54933 5.61854 5.77995 5.80776 5.82545 5.83876 5.96919 5.98818 6.07820 6.29861 6.48093 6.56282 6.92457 7.08226 7.55689 7.57582 8.32280 8.53611 9.21021 10.83120 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.002289 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.403649 B =12227.202645 C =14059.460820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.074 3.926 3 H 0.053 0.947 4 C 0.118 3.882 5 N -0.743 5.743 6 C 0.533 3.467 7 O -0.513 6.513 8 C -0.154 4.154 9 S -0.059 6.059 10 C -0.536 4.536 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 N -0.682 5.682 19 C 0.096 3.904 20 C -0.085 4.085 21 C -0.082 4.082 22 C -0.118 4.118 23 C -0.069 4.069 24 C -0.032 4.032 25 C 0.255 3.745 26 N -0.419 5.419 27 C -0.047 4.047 28 H 0.057 0.943 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.392 0.608 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.347 0.653 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.130 0.870 41 H 0.135 0.865 42 H 0.132 0.868 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.881 10.901 -20.539 26.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.035 4.035 3 H 0.071 0.929 4 C -0.007 4.007 5 N -0.398 5.398 6 C 0.319 3.681 7 O -0.387 6.387 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.684 4.684 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 N -0.316 5.316 19 C -0.033 4.033 20 C -0.086 4.086 21 C -0.101 4.101 22 C -0.136 4.136 23 C -0.090 4.090 24 C -0.035 4.035 25 C -0.060 4.060 26 N -0.094 5.094 27 C -0.068 4.068 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.226 0.774 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.167 0.833 38 H 0.104 0.896 39 H 0.064 0.936 40 H 0.148 0.852 41 H 0.153 0.847 42 H 0.150 0.850 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.625 8.982 -20.001 26.356 hybrid contribution 3.214 1.390 -1.216 3.707 sum -11.411 10.373 -21.218 26.230 Atomic orbital electron populations 1.21740 0.93271 1.03032 1.01646 1.21802 0.96930 0.96098 0.88714 0.92938 1.21520 0.80404 1.01747 0.97000 1.46036 1.07145 1.62233 1.24425 1.20297 0.89494 0.76688 0.81617 1.90716 1.69866 1.45660 1.32444 1.23532 0.93481 1.05621 1.07810 1.85436 1.04614 1.73071 1.20143 1.22852 0.91485 1.44387 1.09676 0.90938 1.24998 0.99606 0.94532 0.94481 1.70018 1.35418 1.35379 1.09398 0.86169 0.82911 0.77866 0.78548 1.20280 1.20739 1.19696 1.60556 1.34297 1.32836 1.03938 1.20973 1.01397 0.92826 0.88071 1.19678 0.93142 0.99307 0.96433 1.21385 0.94935 0.97047 0.96766 1.21113 1.00238 0.97555 0.94658 1.21218 0.90991 0.97482 0.99331 1.15991 0.90716 1.01952 0.94863 1.25768 0.93368 0.93534 0.93352 1.81312 1.09116 1.09246 1.09702 1.21041 1.00421 0.93819 0.91555 0.92395 0.91438 0.92032 0.90804 0.90529 0.77425 0.89196 0.89306 0.92156 0.83272 0.89617 0.93639 0.85201 0.84671 0.84994 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.41 37.16 0.35 -0.54 16 2 C 0.07 0.52 2.81 -67.71 -0.19 0.33 16 3 H 0.05 0.34 7.80 -51.93 -0.40 -0.07 16 4 C 0.12 1.22 5.31 -4.04 -0.02 1.20 16 5 N -0.74 -8.75 4.99 -60.30 -0.30 -9.05 16 6 C 0.53 9.35 7.85 -10.99 -0.09 9.27 16 7 O -0.51 -11.28 15.86 5.56 0.09 -11.19 16 8 C -0.15 -2.93 6.16 36.01 0.22 -2.71 16 9 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 10 C -0.54 -14.91 9.50 30.94 0.29 -14.61 16 11 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 12 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 13 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 14 Si 0.92 20.98 29.55 -169.99 -5.02 15.96 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 18 N -0.68 -4.64 6.29 -107.99 -0.68 -5.32 16 19 C 0.10 0.49 5.61 -4.98 -0.03 0.46 16 20 C -0.09 -0.47 5.39 -104.68 -0.56 -1.04 16 21 C -0.08 -0.41 9.69 -39.49 -0.38 -0.80 16 22 C -0.12 -0.58 10.03 -39.64 -0.40 -0.97 16 23 C -0.07 -0.38 9.76 -39.17 -0.38 -0.77 16 24 C -0.03 -0.22 5.73 -106.93 -0.61 -0.83 16 25 C 0.26 2.28 15.33 -22.44 -0.34 1.93 16 26 N -0.42 -4.78 18.54 41.87 0.78 -4.00 16 27 C -0.05 -0.29 9.41 -39.17 -0.37 -0.66 16 28 H 0.06 0.32 7.45 -51.92 -0.39 -0.07 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.39 3.41 7.37 -40.82 -0.30 3.11 16 34 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 35 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 36 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.35 2.54 6.70 -39.29 -0.26 2.28 16 38 H 0.09 0.40 7.38 -51.93 -0.38 0.01 16 39 H 0.05 0.20 7.99 -51.93 -0.42 -0.22 16 40 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 41 H 0.14 0.43 8.06 -52.48 -0.42 0.01 16 42 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -35.18 389.72 -9.28 -44.46 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.93 Total: -0.10 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.61 Total: -7.78 kcal Atomic # 7 Polarization: -43.96 SS G_CDS: 0.53 Total: -43.43 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.18 -9.28 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713295504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.246 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds