Wall clock time and date at job start Tue Mar 31 2020 18:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47387 * 2 1 4 4 C 1.53002 * 109.47179 * 120.00617 * 2 1 3 5 5 N 1.46498 * 109.47327 * 174.99801 * 4 2 1 6 6 C 1.34766 * 120.00168 * 179.97438 * 5 4 2 7 7 O 1.21280 * 119.99939 * 0.02562 * 6 5 4 8 8 C 1.50701 * 120.00112 * 180.02562 * 6 5 4 9 9 S 1.81003 * 109.47247 * 180.02562 * 8 6 5 10 10 C 1.76202 * 100.00188 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99655 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99900 * 179.97438 * 10 9 8 13 13 N 1.31633 * 120.00156 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99802 * 179.97438 * 12 10 9 15 15 H 1.48509 * 109.46854 * 90.00130 * 14 12 10 16 16 H 1.48496 * 109.47252 * 209.99998 * 14 12 10 17 17 H 1.48500 * 109.47043 * 330.00534 * 14 12 10 18 18 N 1.46904 * 109.46874 * 240.00341 * 2 1 3 19 19 C 1.46899 * 111.00029 * 85.00270 * 18 2 1 20 20 C 1.50703 * 109.47107 * 179.97438 * 19 18 2 21 21 C 1.38384 * 119.92327 * 269.72027 * 20 19 18 22 22 C 1.38343 * 120.30442 * 179.76449 * 21 20 19 23 23 C 1.37964 * 120.14922 * 0.51422 * 22 21 20 24 24 C 1.39611 * 119.84795 * 359.74506 * 23 22 21 25 25 C 1.43202 * 120.15210 * 179.97438 * 24 23 22 26 26 N 7.77798 * 82.50716 * 247.00687 * 2 1 3 27 27 C 1.37924 * 119.92387 * 89.99571 * 20 19 18 28 28 H 1.09007 * 109.47004 * 59.99740 * 1 2 3 29 29 H 1.09007 * 109.47280 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47489 * 299.99436 * 1 2 3 31 31 H 1.08995 * 109.46473 * 295.00096 * 4 2 1 32 32 H 1.09002 * 109.47052 * 54.99739 * 4 2 1 33 33 H 0.97004 * 119.99521 * 359.97438 * 5 4 2 34 34 H 1.08995 * 109.47469 * 299.99950 * 8 6 5 35 35 H 1.09002 * 109.47277 * 60.00340 * 8 6 5 36 36 H 0.97000 * 119.99519 * 179.97438 * 13 12 10 37 37 H 1.00908 * 110.99583 * 208.95182 * 18 2 1 38 38 H 1.09002 * 109.47043 * 299.99792 * 19 18 2 39 39 H 1.09001 * 109.47354 * 59.99854 * 19 18 2 40 40 H 1.08000 * 119.84734 * 0.02562 * 21 20 19 41 41 H 1.08005 * 119.92273 * 180.26050 * 22 21 20 42 42 H 1.08002 * 120.07601 * 179.77171 * 23 22 21 43 43 H 1.08001 * 120.07982 * 359.96261 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 3.5000 -0.8266 1.1905 6 6 4.1730 -1.4285 2.1910 7 8 3.5699 -1.8836 3.1397 8 6 5.6750 -1.5362 2.1309 9 16 6.2783 -2.3897 3.6086 10 6 8.0102 -2.3756 3.2845 11 1 8.3864 -1.9224 2.3793 12 6 8.8908 -2.9468 4.1926 13 7 8.4322 -3.4996 5.2957 14 14 10.7269 -2.9324 3.8486 15 1 11.3277 -1.7000 4.4194 16 1 11.3565 -4.1243 4.4714 17 1 10.9559 -2.9610 2.3817 18 7 2.0196 -0.6925 -1.1995 19 6 2.0824 0.2227 -2.3469 20 6 2.5884 -0.5214 -3.5558 21 6 3.9461 -0.5673 -3.8198 22 6 4.4196 -1.2522 -4.9246 23 6 3.5389 -1.8856 -5.7771 24 6 2.1676 -1.8387 -5.5198 25 6 1.2476 -2.4934 -6.4006 26 7 0.5157 -3.0123 -7.0989 27 6 1.6969 -1.1501 -4.3997 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.7516 -0.1585 2.1369 32 1 1.6053 -1.7199 1.2950 33 1 3.9823 -0.4629 0.4315 34 1 5.9637 -2.0991 1.2433 35 1 6.1093 -0.5375 2.0850 36 1 9.0477 -3.8991 5.9301 37 1 2.9173 -1.1205 -1.0288 38 1 1.0870 0.6165 -2.5525 39 1 2.7588 1.0463 -2.1182 40 1 4.6395 -0.0698 -3.1580 41 1 5.4808 -1.2876 -5.1225 42 1 3.9096 -2.4168 -6.6413 43 1 0.6373 -1.1103 -4.1946 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713295504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:46 Heat of formation + Delta-G solvation = -10.064160 kcal Electronic energy + Delta-G solvation = -24220.752791 eV Core-core repulsion = 20583.926992 eV Total energy + Delta-G solvation = -3636.825799 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81481 -40.43840 -38.43125 -37.47718 -35.24244 -34.55465 -33.43692 -32.19471 -31.15124 -30.38280 -27.71557 -26.94370 -25.78907 -24.79253 -22.58003 -21.79736 -21.59692 -19.85836 -19.30108 -17.93001 -17.44149 -17.17501 -17.05156 -16.85288 -16.67539 -16.14529 -15.93500 -15.77333 -15.18679 -15.01186 -14.76300 -14.52558 -14.34956 -14.15789 -14.09222 -13.93705 -13.63767 -13.31959 -13.19163 -13.13719 -13.09406 -12.89404 -12.85423 -12.62993 -12.51097 -12.32141 -11.84106 -11.79436 -11.67597 -11.11725 -10.94998 -10.23496 -10.13973 -9.87393 -9.81426 -9.33917 -8.63676 -8.32008 -6.09722 -0.15776 0.40187 1.29604 1.44717 1.49973 1.58163 1.59567 1.63798 1.92720 2.26408 2.31376 2.82043 2.88901 3.02381 3.30678 3.37056 3.73634 3.83403 3.97965 4.00865 4.16364 4.24588 4.33571 4.36159 4.37266 4.42780 4.54459 4.64630 4.68882 4.75082 4.88167 4.93581 5.01273 5.06853 5.11291 5.35286 5.37288 5.44105 5.44840 5.50189 5.58117 5.91293 6.07029 6.22567 6.38959 6.42075 6.47056 7.09550 7.25085 8.77037 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.011350 B = 0.002289 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2466.403649 B =12227.202645 C =14059.460820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.087 3.913 3 H 0.071 0.929 4 C 0.118 3.882 5 N -0.713 5.713 6 C 0.535 3.465 7 O -0.566 6.566 8 C -0.129 4.129 9 S -0.156 6.156 10 C -0.543 4.543 11 H 0.085 0.915 12 C 0.011 3.989 13 N -0.912 5.912 14 Si 0.998 3.002 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.256 1.256 18 N -0.691 5.691 19 C 0.098 3.902 20 C -0.090 4.090 21 C -0.079 4.079 22 C -0.120 4.120 23 C -0.070 4.070 24 C -0.050 4.050 25 C 0.278 3.722 26 N -0.472 5.472 27 C -0.051 4.051 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.412 0.588 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.270 0.730 37 H 0.344 0.656 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.149 0.851 41 H 0.155 0.845 42 H 0.143 0.857 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.365 12.900 -22.404 27.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 H 0.088 0.912 4 C -0.006 4.006 5 N -0.368 5.368 6 C 0.321 3.679 7 O -0.444 6.444 8 C -0.280 4.280 9 S 0.071 5.929 10 C -0.691 4.691 11 H 0.103 0.897 12 C -0.193 4.193 13 N -0.549 5.549 14 Si 0.820 3.180 15 H -0.194 1.194 16 H -0.206 1.206 17 H -0.179 1.179 18 N -0.326 5.326 19 C -0.030 4.030 20 C -0.091 4.091 21 C -0.098 4.098 22 C -0.138 4.138 23 C -0.090 4.090 24 C -0.053 4.053 25 C -0.036 4.036 26 N -0.148 5.148 27 C -0.072 4.072 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.249 0.751 34 H 0.131 0.869 35 H 0.130 0.870 36 H 0.079 0.921 37 H 0.164 0.836 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.167 0.833 41 H 0.173 0.827 42 H 0.161 0.839 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.126 11.022 -21.933 27.836 hybrid contribution 2.670 0.845 -0.695 2.885 sum -10.456 11.866 -22.629 27.608 Atomic orbital electron populations 1.21736 0.92759 1.02498 1.02570 1.21694 0.97157 0.96280 0.87094 0.91157 1.21627 0.78923 1.01259 0.98832 1.45708 1.07859 1.59943 1.23259 1.20070 0.88930 0.76865 0.82077 1.90707 1.70501 1.48330 1.34827 1.23367 0.94551 1.05869 1.04189 1.85655 1.05939 1.75183 1.26089 1.23199 0.91550 1.44203 1.10101 0.89664 1.26139 1.05213 0.93898 0.94091 1.70192 1.37334 1.36643 1.10710 0.84959 0.75904 0.77979 0.79178 1.19368 1.20609 1.17946 1.60555 1.34200 1.33599 1.04202 1.21014 1.02262 0.92718 0.87004 1.19756 0.93385 0.99412 0.96510 1.21683 0.94993 0.96358 0.96807 1.21383 1.01126 0.97002 0.94316 1.21421 0.90479 0.97291 0.99839 1.16091 0.90937 1.03102 0.95196 1.26133 0.92602 0.92366 0.92509 1.81321 1.10718 1.11282 1.11510 1.21140 1.00868 0.93736 0.91472 0.90996 0.92736 0.91602 0.91420 0.92280 0.75065 0.86923 0.87014 0.92099 0.83618 0.89028 0.91956 0.83284 0.82728 0.83918 0.84657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.41 71.98 0.68 -0.80 16 2 C 0.09 0.99 2.81 44.91 0.13 1.12 16 3 H 0.07 0.61 7.80 -2.39 -0.02 0.59 16 4 C 0.12 2.25 5.31 86.38 0.46 2.71 16 5 N -0.71 -15.15 4.99 -463.08 -2.31 -17.46 16 6 C 0.53 18.21 7.85 87.66 0.69 18.90 16 7 O -0.57 -25.27 15.86 -3.03 -0.05 -25.31 16 8 C -0.13 -4.70 6.16 71.24 0.44 -4.26 16 9 S -0.16 -8.39 20.57 -56.49 -1.16 -9.56 16 10 C -0.54 -29.99 9.50 67.95 0.65 -29.35 16 11 H 0.09 4.31 7.80 -2.91 -0.02 4.29 16 12 C 0.01 0.62 5.49 84.86 0.47 1.09 16 13 N -0.91 -55.30 13.22 21.65 0.29 -55.01 16 14 Si 1.00 42.42 29.55 68.60 2.03 44.45 16 15 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 16 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 18 N -0.69 -7.41 6.29 -495.57 -3.12 -10.53 16 19 C 0.10 0.66 5.61 85.56 0.48 1.14 16 20 C -0.09 -0.75 5.39 -19.90 -0.11 -0.86 16 21 C -0.08 -0.53 9.69 22.33 0.22 -0.31 16 22 C -0.12 -0.82 10.03 22.23 0.22 -0.60 16 23 C -0.07 -0.64 9.76 22.54 0.22 -0.42 16 24 C -0.05 -0.62 5.73 -21.36 -0.12 -0.74 16 25 C 0.28 4.95 15.33 88.32 1.35 6.30 16 26 N -0.47 -11.07 18.54 19.02 0.35 -10.72 16 27 C -0.05 -0.55 9.41 22.54 0.21 -0.33 16 28 H 0.07 0.60 7.45 -2.38 -0.02 0.58 16 29 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.41 5.62 7.37 -92.71 -0.68 4.94 16 34 H 0.11 3.62 8.14 -2.40 -0.02 3.60 16 35 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 36 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 37 H 0.34 3.94 6.70 -89.69 -0.60 3.34 16 38 H 0.09 0.54 7.38 -2.39 -0.02 0.53 16 39 H 0.06 0.25 7.99 -2.39 -0.02 0.23 16 40 H 0.15 0.41 8.06 -2.91 -0.02 0.39 16 41 H 0.16 0.44 8.06 -2.91 -0.02 0.41 16 42 H 0.14 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.14 1.32 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -79.72 389.72 1.76 -77.96 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -0.24 Total: 12.59 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 5.98 Total: -6.40 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -4.79 Total: -93.72 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.31 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.56 kcal Total: -79.72 1.76 -77.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713295504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.893 kcal (2) G-P(sol) polarization free energy of solvation -79.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds