Wall clock time and date at job start Tue Mar 31 2020 18:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21760 * 120.00593 * 0.02562 * 7 6 5 9 9 C 1.46123 * 119.99922 * 180.02562 * 7 6 5 10 10 S 1.75808 * 125.47732 * 359.69272 * 9 7 6 11 11 C 1.70570 * 91.67581 * 179.97438 * 10 9 7 12 12 C 1.33577 * 111.17307 * 0.30816 * 11 10 9 13 13 C 1.37350 * 125.47642 * 179.97438 * 9 7 6 14 14 N 1.39886 * 123.49024 * 359.97438 * 13 9 7 15 15 C 1.36597 * 125.67219 * 309.69687 * 14 13 9 16 16 C 1.34845 * 108.19967 * 179.89001 * 15 14 13 17 17 C 1.40965 * 107.47003 * 0.36431 * 16 15 14 18 18 C 1.34843 * 107.47371 * 359.76945 * 17 16 15 19 19 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 20 20 C 1.36931 * 119.99788 * 274.99780 * 19 2 1 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 2 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 2 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 29 29 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 30 30 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 32 32 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 33 33 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 34 34 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 35 35 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 36 36 H 1.08002 * 124.41545 * 180.09301 * 11 10 9 37 37 H 1.07999 * 122.45994 * 179.78707 * 12 11 10 38 38 H 1.08002 * 125.89938 * 0.03012 * 15 14 13 39 39 H 1.07993 * 126.26365 * 180.16903 * 16 15 14 40 40 H 1.07994 * 126.26279 * 179.74077 * 17 16 15 41 41 H 1.08001 * 125.89594 * 179.97438 * 18 17 16 42 42 H 0.97000 * 119.99792 * 94.99575 * 19 2 1 43 43 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1615 -0.7977 -2.0211 9 6 5.8610 -2.0269 -3.9693 10 16 4.8570 -2.8596 -5.1481 11 6 6.2201 -3.2927 -6.0774 12 6 7.3470 -2.8400 -5.5211 13 6 7.1771 -2.1316 -4.3478 14 7 8.2360 -1.5790 -3.6196 15 6 8.3087 -0.2900 -3.1734 16 6 9.4747 -0.1380 -2.5133 17 6 10.1514 -1.3737 -2.5595 18 6 9.3718 -2.2370 -3.2416 19 7 2.0183 -0.6906 1.1963 20 6 2.1491 -0.0075 2.3757 21 1 1.8919 1.0404 2.4243 22 6 2.6062 -0.6633 3.5106 23 7 2.9191 -1.9403 3.4515 24 14 2.7773 0.2668 5.1216 25 1 2.3647 1.6796 4.9237 26 1 1.9116 -0.3627 6.1509 27 1 4.1921 0.2230 5.5706 28 1 -0.3633 0.5139 0.8898 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -1.7716 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4368 -1.3573 34 1 3.9994 -1.0730 -0.4258 35 1 3.4258 -1.7352 -3.1109 36 1 6.1780 -3.8620 -6.9942 37 1 8.3195 -3.0142 -5.9574 38 1 7.5605 0.4746 -3.3215 39 1 9.8272 0.7660 -2.0391 40 1 11.1175 -1.5895 -2.1279 41 1 9.6054 -3.2700 -3.4530 42 1 2.2489 -1.6318 1.1527 43 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713413946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:32 Heat of formation + Delta-G solvation = 66.692344 kcal Electronic energy + Delta-G solvation = -25511.569594 eV Core-core repulsion = 21878.072206 eV Total energy + Delta-G solvation = -3633.497387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52358 -39.49590 -37.83974 -36.55956 -34.43514 -32.30111 -32.02240 -30.20888 -28.99755 -28.59647 -27.88257 -25.11407 -23.85953 -22.85436 -21.45485 -21.24745 -20.29752 -19.97896 -19.07013 -18.71718 -17.35224 -17.20084 -16.02312 -15.54118 -15.41720 -15.01428 -14.86887 -14.45455 -14.01447 -13.97227 -13.63440 -13.50437 -13.34774 -13.23811 -12.72470 -12.62580 -12.51210 -12.21600 -12.05473 -11.93720 -11.58193 -11.50697 -11.11577 -10.93003 -10.75326 -10.63973 -10.30385 -10.04803 -9.84103 -9.63039 -9.58196 -9.24858 -8.93848 -8.85300 -8.27242 -7.96994 -6.94139 -5.73555 -3.02411 0.00021 0.94086 1.34625 1.70193 2.56158 2.97501 3.07937 3.15665 3.22377 3.46719 3.52302 3.54580 4.44206 4.62493 4.67260 4.75314 5.03705 5.21097 5.28615 5.36575 5.37373 5.45981 5.55846 5.59813 5.65926 5.73797 5.80053 5.85667 6.03766 6.15549 6.30577 6.37154 6.38667 6.39574 6.42041 6.60246 6.67822 6.85201 7.05119 7.07261 7.28057 7.47290 7.50623 7.74034 8.18531 8.44546 9.56182 10.12279 10.46747 11.49115 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.003060 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.091497 B = 9149.321922 C =10830.784455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.050 0.950 4 C -0.133 4.133 5 C 0.124 3.876 6 N -0.722 5.722 7 C 0.577 3.423 8 O -0.505 6.505 9 C -0.274 4.274 10 S 0.244 5.756 11 C -0.222 4.222 12 C -0.148 4.148 13 C 0.183 3.817 14 N -0.391 5.391 15 C 0.051 3.949 16 C -0.209 4.209 17 C -0.185 4.185 18 C -0.024 4.024 19 N -0.724 5.724 20 C -0.238 4.238 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.904 3.096 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 H 0.054 0.946 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.392 0.608 36 H 0.178 0.822 37 H 0.152 0.848 38 H 0.157 0.843 39 H 0.137 0.863 40 H 0.136 0.864 41 H 0.158 0.842 42 H 0.383 0.617 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.074 -2.974 -24.489 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.068 0.932 4 C -0.172 4.172 5 C 0.002 3.998 6 N -0.373 5.373 7 C 0.362 3.638 8 O -0.381 6.381 9 C -0.397 4.397 10 S 0.512 5.488 11 C -0.360 4.360 12 C -0.181 4.181 13 C 0.075 3.925 14 N -0.066 5.066 15 C -0.076 4.076 16 C -0.232 4.232 17 C -0.210 4.210 18 C -0.149 4.149 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.218 1.218 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.225 0.775 36 H 0.195 0.805 37 H 0.170 0.830 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.176 0.824 42 H 0.217 0.783 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.841 -2.822 -24.088 24.732 hybrid contribution 1.354 -0.049 0.765 1.556 sum 6.194 -2.871 -23.324 24.303 Atomic orbital electron populations 1.22425 0.99097 1.00841 0.99994 1.20141 0.91905 0.95568 0.85933 0.93243 1.22079 0.93694 1.01910 0.99511 1.21521 0.94551 0.97189 0.86570 1.45998 1.06292 1.57123 1.27842 1.16724 0.82936 0.80389 0.83762 1.90964 1.54487 1.44832 1.47862 1.24748 0.97275 1.13596 1.04040 1.83059 1.07191 1.45689 1.12904 1.25062 0.97223 1.07387 1.06306 1.19773 1.00807 1.02446 0.95030 1.16984 0.85952 0.97614 0.91925 1.40894 1.13418 1.09879 1.42402 1.21744 0.99004 0.85285 1.01601 1.20863 0.96447 0.99141 1.06773 1.20895 1.00864 0.93999 1.05206 1.21768 0.87701 0.98668 1.06773 1.42462 1.78096 1.10648 1.05379 1.19258 1.36627 0.93824 0.87228 0.91150 1.24725 1.02136 0.95930 0.98037 1.69663 1.50998 1.08654 1.28703 0.86154 0.77340 0.78797 0.84133 1.20562 1.21968 1.21848 0.92672 0.94573 0.93519 0.91549 0.91861 0.91454 0.89377 0.77472 0.80489 0.83031 0.82523 0.84552 0.84571 0.82413 0.78304 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.49 37.16 0.35 -2.46 16 2 C 0.18 3.31 2.89 -67.93 -0.20 3.11 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -2.00 4.87 -26.73 -0.13 -2.13 16 5 C 0.12 2.04 5.56 -4.04 -0.02 2.02 16 6 N -0.72 -9.93 5.55 -61.79 -0.34 -10.28 16 7 C 0.58 8.97 7.72 -13.10 -0.10 8.87 16 8 O -0.51 -9.84 13.02 5.14 0.07 -9.77 16 9 C -0.27 -3.39 6.43 -36.74 -0.24 -3.62 16 10 S 0.24 1.87 22.13 -107.50 -2.38 -0.51 16 11 C -0.22 -1.48 10.90 29.10 0.32 -1.16 16 12 C -0.15 -1.31 9.97 -41.26 -0.41 -1.72 16 13 C 0.18 2.25 5.99 -84.55 -0.51 1.74 16 14 N -0.39 -5.53 2.65 -61.59 -0.16 -5.70 16 15 C 0.05 0.77 8.53 -16.63 -0.14 0.63 16 16 C -0.21 -3.05 10.86 -39.75 -0.43 -3.48 16 17 C -0.18 -2.49 10.86 -39.75 -0.43 -2.92 16 18 C -0.02 -0.31 11.24 -16.63 -0.19 -0.50 16 19 N -0.72 -17.70 4.57 -53.42 -0.24 -17.95 16 20 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.44 13.06 55.49 0.72 -27.72 16 24 Si 0.90 22.78 29.55 -169.99 -5.02 17.76 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.09 1.83 7.75 -51.93 -0.40 1.43 16 35 H 0.39 4.15 7.57 -40.82 -0.31 3.84 16 36 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 37 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 38 H 0.16 2.36 7.43 -52.49 -0.39 1.97 16 39 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.38 10.03 7.80 -40.82 -0.32 9.71 16 43 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 376.50 15.07 5.67 5.67 Total: -1.00 -34.23 376.50 -10.10 -44.33 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -6.04 Total: 12.95 kcal Atomic # 6 Polarization: -6.41 SS G_CDS: -2.37 Total: -8.79 kcal Atomic # 7 Polarization: -61.61 SS G_CDS: -0.03 Total: -61.64 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.07 Total: -9.77 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.38 Total: -0.51 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.23 -10.10 -44.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713413946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.023 kcal (2) G-P(sol) polarization free energy of solvation -34.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds