Wall clock time and date at job start Tue Mar 31 2020 18:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47567 * 2 1 4 4 C 1.52995 * 109.47104 * 239.99528 * 2 1 3 5 5 C 1.53004 * 109.47243 * 175.00526 * 4 2 1 6 6 N 1.46496 * 109.47288 * 180.02562 * 5 4 2 7 7 C 1.34770 * 119.99871 * 179.97438 * 6 5 4 8 8 O 1.21760 * 120.00593 * 0.02562 * 7 6 5 9 9 C 1.46123 * 119.99922 * 180.02562 * 7 6 5 10 10 S 1.75808 * 125.47732 * 359.69272 * 9 7 6 11 11 C 1.70570 * 91.67581 * 179.97438 * 10 9 7 12 12 C 1.33577 * 111.17307 * 0.30816 * 11 10 9 13 13 C 1.37350 * 125.47642 * 179.97438 * 9 7 6 14 14 N 1.39886 * 123.49024 * 359.97438 * 13 9 7 15 15 C 1.36597 * 125.67219 * 309.69687 * 14 13 9 16 16 C 1.34845 * 108.19967 * 179.89001 * 15 14 13 17 17 C 1.40965 * 107.47003 * 0.36431 * 16 15 14 18 18 C 1.34843 * 107.47371 * 359.76945 * 17 16 15 19 19 N 1.46505 * 109.46692 * 119.99923 * 2 1 3 20 20 C 1.36931 * 119.99788 * 274.99780 * 19 2 1 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 2 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 2 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48508 * 109.46872 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47141 * 119.99997 * 24 22 20 27 27 H 1.48498 * 109.47018 * 240.00044 * 24 22 20 28 28 H 1.08991 * 109.47054 * 300.00703 * 1 2 3 29 29 H 1.09004 * 109.46242 * 60.00005 * 1 2 3 30 30 H 1.08994 * 109.47567 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47445 * 295.00662 * 4 2 1 32 32 H 1.09002 * 109.47282 * 55.00704 * 4 2 1 33 33 H 1.09002 * 109.46905 * 299.99857 * 5 4 2 34 34 H 1.09002 * 109.46836 * 59.99905 * 5 4 2 35 35 H 0.97004 * 119.99872 * 359.97438 * 6 5 4 36 36 H 1.08002 * 124.41545 * 180.09301 * 11 10 9 37 37 H 1.07999 * 122.45994 * 179.78707 * 12 11 10 38 38 H 1.08002 * 125.89938 * 0.03012 * 15 14 13 39 39 H 1.07993 * 126.26365 * 180.16903 * 16 15 14 40 40 H 1.07994 * 126.26279 * 179.74077 * 17 16 15 41 41 H 1.08001 * 125.89594 * 179.97438 * 18 17 16 42 42 H 0.97000 * 119.99792 * 94.99575 * 19 2 1 43 43 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5649 -0.6135 -1.3136 6 7 4.0532 -1.3037 -2.5100 7 6 5.3740 -1.3390 -2.7756 8 8 6.1615 -0.7977 -2.0211 9 6 5.8610 -2.0269 -3.9693 10 16 4.8570 -2.8596 -5.1481 11 6 6.2201 -3.2927 -6.0774 12 6 7.3470 -2.8400 -5.5211 13 6 7.1771 -2.1316 -4.3478 14 7 8.2360 -1.5790 -3.6196 15 6 8.3087 -0.2900 -3.1734 16 6 9.4747 -0.1380 -2.5133 17 6 10.1514 -1.3737 -2.5595 18 6 9.3718 -2.2370 -3.2416 19 7 2.0183 -0.6906 1.1963 20 6 2.1491 -0.0075 2.3757 21 1 1.8919 1.0404 2.4243 22 6 2.6062 -0.6633 3.5106 23 7 2.9191 -1.9403 3.4515 24 14 2.7773 0.2668 5.1216 25 1 2.3647 1.6796 4.9237 26 1 1.9116 -0.3627 6.1509 27 1 4.1921 0.2230 5.5706 28 1 -0.3633 0.5139 0.8898 29 1 -0.3632 0.5139 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 1.7516 -1.7716 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4368 -1.3573 34 1 3.9994 -1.0730 -0.4258 35 1 3.4258 -1.7352 -3.1109 36 1 6.1780 -3.8620 -6.9942 37 1 8.3195 -3.0142 -5.9574 38 1 7.5605 0.4746 -3.3215 39 1 9.8272 0.7660 -2.0391 40 1 11.1175 -1.5895 -2.1279 41 1 9.6054 -3.2700 -3.4530 42 1 2.2489 -1.6318 1.1527 43 1 3.2389 -2.3985 4.2445 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713413946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:31 Heat of formation + Delta-G solvation = 44.786369 kcal Electronic energy + Delta-G solvation = -25512.519508 eV Core-core repulsion = 21878.072206 eV Total energy + Delta-G solvation = -3634.447302 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.50939 -40.68397 -38.69659 -38.07292 -35.91465 -34.18688 -32.91067 -31.55079 -30.49691 -29.76391 -29.10902 -26.12994 -25.68547 -24.15514 -22.47364 -22.30784 -21.46447 -21.31079 -20.05724 -19.82818 -19.20291 -18.24173 -17.07566 -16.97114 -16.55864 -16.44793 -15.78789 -15.69056 -15.41543 -15.36385 -15.00269 -14.68445 -14.61640 -14.25354 -14.17632 -13.70404 -13.61167 -13.39294 -13.26433 -13.19422 -12.99498 -12.87029 -12.65247 -12.30833 -12.26009 -12.15962 -12.11116 -11.67180 -11.61795 -11.18244 -10.96025 -10.43823 -10.28551 -9.85374 -9.15699 -9.04297 -8.98917 -7.93901 -5.20537 -0.80857 0.21946 0.69692 0.94194 1.44451 1.46391 1.55099 1.55159 1.96027 2.00066 2.10092 2.13850 2.56087 3.40850 3.64592 3.88479 3.88657 3.94469 3.99539 4.19104 4.26606 4.30654 4.33652 4.51272 4.64319 4.64861 4.73028 4.75375 4.85664 4.92481 4.97869 5.00125 5.08091 5.17463 5.31923 5.32597 5.36409 5.38486 5.53454 5.61107 6.02104 6.22918 6.29264 6.37551 6.52601 7.06432 7.35317 8.13175 8.34047 9.29893 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.003060 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.091497 B = 9149.321922 C =10830.784455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.043 0.957 4 C -0.117 4.117 5 C 0.137 3.863 6 N -0.708 5.708 7 C 0.571 3.429 8 O -0.558 6.558 9 C -0.322 4.322 10 S 0.315 5.685 11 C -0.193 4.193 12 C -0.164 4.164 13 C 0.166 3.834 14 N -0.397 5.397 15 C 0.030 3.970 16 C -0.228 4.228 17 C -0.202 4.202 18 C -0.024 4.024 19 N -0.736 5.736 20 C -0.232 4.232 21 H 0.074 0.926 22 C -0.078 4.078 23 N -0.970 5.970 24 Si 0.965 3.035 25 H -0.265 1.265 26 H -0.292 1.292 27 H -0.299 1.299 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.055 0.945 34 H 0.036 0.964 35 H 0.410 0.590 36 H 0.221 0.779 37 H 0.169 0.831 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.156 0.844 41 H 0.188 0.812 42 H 0.371 0.629 43 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 -3.946 -27.793 28.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.061 0.939 4 C -0.155 4.155 5 C 0.013 3.987 6 N -0.360 5.360 7 C 0.359 3.641 8 O -0.438 6.438 9 C -0.444 4.444 10 S 0.582 5.418 11 C -0.332 4.332 12 C -0.195 4.195 13 C 0.058 3.942 14 N -0.071 5.071 15 C -0.099 4.099 16 C -0.252 4.252 17 C -0.227 4.227 18 C -0.150 4.150 19 N -0.377 5.377 20 C -0.364 4.364 21 H 0.092 0.908 22 C -0.270 4.270 23 N -0.621 5.621 24 Si 0.795 3.205 25 H -0.189 1.189 26 H -0.220 1.220 27 H -0.227 1.227 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.247 0.753 36 H 0.237 0.763 37 H 0.186 0.814 38 H 0.163 0.837 39 H 0.159 0.841 40 H 0.174 0.826 41 H 0.205 0.795 42 H 0.203 0.797 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.473 -3.774 -27.465 27.940 hybrid contribution 1.690 0.240 1.613 2.349 sum 5.163 -3.534 -25.852 26.598 Atomic orbital electron populations 1.22257 0.96939 1.01121 1.00952 1.20451 0.93271 0.95151 0.85511 0.93934 1.21941 0.92103 1.02256 0.99193 1.21141 0.95580 0.96130 0.85855 1.45744 1.06399 1.56775 1.27110 1.17258 0.82783 0.79749 0.84358 1.90930 1.55725 1.47162 1.50032 1.24598 0.98706 1.16121 1.04970 1.82789 1.05810 1.43029 1.10126 1.25636 0.95972 1.05005 1.06577 1.19868 1.02527 1.02962 0.94119 1.17532 0.85493 0.98176 0.93017 1.41072 1.14184 1.09481 1.42387 1.21697 0.99077 0.86201 1.02875 1.21137 0.96826 1.00168 1.07025 1.21212 1.01956 0.93612 1.05895 1.22306 0.87147 0.99754 1.05809 1.42669 1.78396 1.10231 1.06363 1.19633 1.34350 0.94044 0.88344 0.90771 1.25480 1.03358 0.96833 1.01315 1.69814 1.53105 1.10170 1.29053 0.85183 0.76544 0.78388 0.80389 1.18945 1.21963 1.22720 0.94840 0.90461 0.93556 0.90873 0.87398 0.92669 0.94513 0.75311 0.76258 0.81359 0.83723 0.84112 0.82639 0.79544 0.79690 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.49 71.98 0.68 -4.25 16 2 C 0.16 6.10 2.89 44.99 0.13 6.23 16 3 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 4 C -0.12 -3.31 4.87 30.59 0.15 -3.16 16 5 C 0.14 4.62 5.56 86.38 0.48 5.10 16 6 N -0.71 -19.41 5.55 -467.60 -2.60 -22.01 16 7 C 0.57 18.35 7.72 86.29 0.67 19.01 16 8 O -0.56 -23.38 13.02 -4.54 -0.06 -23.44 16 9 C -0.32 -7.74 6.43 24.11 0.16 -7.58 16 10 S 0.31 3.69 22.13 -56.49 -1.25 2.44 16 11 C -0.19 -1.69 10.90 66.76 0.73 -0.96 16 12 C -0.16 -2.42 9.97 21.18 0.21 -2.21 16 13 C 0.17 3.98 5.99 37.62 0.23 4.21 16 14 N -0.40 -11.50 2.65 -348.77 -0.93 -12.43 16 15 C 0.03 0.96 8.53 83.17 0.71 1.67 16 16 C -0.23 -7.10 10.86 22.16 0.24 -6.86 16 17 C -0.20 -5.58 10.86 22.16 0.24 -5.34 16 18 C -0.02 -0.63 11.24 83.17 0.94 0.30 16 19 N -0.74 -36.71 4.57 -322.93 -1.48 -38.18 16 20 C -0.23 -13.03 9.93 84.04 0.83 -12.20 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 23 N -0.97 -61.22 13.06 21.65 0.28 -60.93 16 24 Si 0.96 47.92 29.55 68.60 2.03 49.94 16 25 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.30 -15.14 7.11 99.48 0.71 -14.43 16 28 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.04 1.63 7.75 -2.39 -0.02 1.61 16 35 H 0.41 7.90 7.57 -92.71 -0.70 7.20 16 36 H 0.22 0.07 8.06 -2.91 -0.02 0.05 16 37 H 0.17 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.15 4.87 7.43 -2.91 -0.02 4.85 16 39 H 0.14 4.00 8.06 -2.91 -0.02 3.98 16 40 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 41 H 0.19 3.54 8.06 -2.91 -0.02 3.51 16 42 H 0.37 20.08 7.80 -92.71 -0.72 19.36 16 43 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -80.39 376.50 2.47 -77.93 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.39 Total: 36.85 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 6.85 Total: -10.16 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -4.71 Total: -133.55 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: -0.06 Total: -23.44 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.03 Total: 49.94 kcal Atomic # 16 Polarization: 3.69 SS G_CDS: -1.25 Total: 2.44 kcal Total: -80.39 2.47 -77.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713413946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.712 kcal (2) G-P(sol) polarization free energy of solvation -80.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds