Wall clock time and date at job start Tue Mar 31 2020 16:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28053 * 124.24325 * 2 1 4 4 C 1.34412 * 117.91823 * 179.97438 * 3 2 1 5 5 C 1.41244 * 129.48387 * 180.02562 * 4 3 2 6 6 C 1.35748 * 120.63488 * 180.02562 * 5 4 3 7 7 C 1.40199 * 120.61787 * 359.97438 * 6 5 4 8 8 C 1.47597 * 120.12580 * 179.97438 * 7 6 5 9 9 O 1.21589 * 119.99542 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00098 * 0.02562 * 8 7 6 11 11 C 1.46496 * 119.99871 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47288 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47243 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.47294 * 54.99887 * 13 12 11 15 15 C 1.53006 * 109.47104 * 175.00526 * 13 12 11 16 16 N 1.46505 * 109.47024 * 294.99928 * 13 12 11 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 13 12 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 13 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 13 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.39173 * 119.74503 * 0.23295 * 7 6 5 26 26 C 1.38918 * 119.84843 * 359.51487 * 25 7 6 27 27 S 1.70647 * 124.24114 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47300 * 90.03176 * 1 2 3 29 29 H 1.08999 * 109.47256 * 210.02472 * 1 2 3 30 30 H 1.08994 * 109.47154 * 330.02757 * 1 2 3 31 31 H 1.07998 * 119.68621 * 359.97438 * 5 4 3 32 32 H 1.08002 * 119.69324 * 179.97438 * 6 5 4 33 33 H 0.97004 * 120.00257 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.46967 * 60.00147 * 11 10 8 35 35 H 1.09002 * 109.47323 * 299.99763 * 11 10 8 36 36 H 1.09003 * 109.47011 * 59.99676 * 12 11 10 37 37 H 1.09002 * 109.46836 * 300.00173 * 12 11 10 38 38 H 1.08994 * 109.47567 * 59.99528 * 15 13 12 39 39 H 1.08991 * 109.47054 * 180.02562 * 15 13 12 40 40 H 1.09004 * 109.46242 * 299.99533 * 15 13 12 41 41 H 0.97000 * 119.99792 * 334.99921 * 16 13 12 42 42 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.07916 * 179.72425 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5762 1.8950 0.0011 6 6 5.8864 1.5397 0.0011 7 6 6.2597 0.1883 0.0010 8 6 7.6875 -0.1858 0.0004 9 8 8.0086 -1.3585 -0.0002 10 7 8.6352 0.7725 0.0004 11 6 10.0523 0.4011 0.0004 12 6 10.9114 1.6672 -0.0002 13 6 12.3913 1.2794 -0.0008 14 1 12.5930 0.6170 -0.8426 15 6 13.2489 2.5402 -0.1270 16 7 12.7164 0.5911 1.2509 17 6 13.7714 -0.2804 1.2990 18 1 14.3643 -0.4601 0.4143 19 6 14.0829 -0.9283 2.4866 20 7 13.3608 -0.7089 3.5648 21 14 15.5270 -2.1113 2.5542 22 1 16.7755 -1.3890 2.2013 23 1 15.6471 -2.6678 3.9256 24 1 15.3058 -3.2180 1.5891 25 6 5.2789 -0.7990 -0.0040 26 6 3.9368 -0.4404 0.0014 27 16 2.4672 -1.4107 0.0006 28 1 -0.3634 -0.0006 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3057 2.9406 0.0008 32 1 6.6483 2.3052 0.0012 33 1 8.3790 1.7081 0.0005 34 1 10.2735 -0.1879 -0.8897 35 1 10.2736 -0.1881 0.8904 36 1 10.6902 2.2567 0.8896 37 1 10.6900 2.2561 -0.8903 38 1 13.0473 3.2026 0.7148 39 1 14.3032 2.2639 -0.1279 40 1 13.0071 3.0523 -1.0584 41 1 12.1841 0.7527 2.0456 42 1 13.5782 -1.1619 4.3946 43 1 5.5604 -1.8417 -0.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713420512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:19 Heat of formation + Delta-G solvation = 22.995186 kcal Electronic energy + Delta-G solvation = -24578.191106 eV Core-core repulsion = 20942.798868 eV Total energy + Delta-G solvation = -3635.392238 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -40.92427 -39.56589 -37.16862 -36.51874 -34.48729 -32.43205 -31.99279 -31.52199 -29.69837 -28.69947 -27.81787 -24.72413 -24.12344 -23.46103 -22.23228 -21.69911 -20.56994 -19.78812 -18.97782 -17.76111 -17.15093 -16.39175 -16.18288 -15.63545 -15.40201 -15.26582 -14.74368 -14.34756 -14.31095 -14.00656 -13.76760 -13.53363 -13.50913 -13.42950 -12.98675 -12.83575 -12.65994 -12.46808 -12.03939 -11.76720 -11.54812 -11.26133 -11.08628 -10.90902 -10.73367 -10.64004 -10.57324 -10.30934 -10.08335 -10.05481 -9.81218 -9.61979 -9.07827 -8.90687 -8.82186 -8.49954 -6.93865 -5.73264 -3.02005 -0.21479 0.77332 0.79441 1.28957 1.65303 2.82450 3.18211 3.40421 3.47073 3.51667 3.52344 3.55168 4.18179 4.46699 4.53551 4.62477 4.70596 4.76529 4.89033 4.92440 5.08498 5.28658 5.36715 5.38902 5.42077 5.56625 5.64143 5.72119 5.75862 5.87339 5.87563 6.06160 6.15912 6.19745 6.33314 6.39176 6.45094 6.64037 6.69832 6.86655 7.06496 7.17594 7.55230 7.73151 8.24928 8.45012 9.56348 10.12841 10.47397 11.49235 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.002030 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.372901 B =13791.389261 C =14660.393041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.093 3.907 3 N -0.473 5.473 4 C 0.103 3.897 5 C -0.071 4.071 6 C -0.076 4.076 7 C -0.113 4.113 8 C 0.554 3.446 9 O -0.529 6.529 10 N -0.720 5.720 11 C 0.121 3.879 12 C -0.133 4.133 13 C 0.174 3.826 14 H 0.050 0.950 15 C -0.163 4.163 16 N -0.723 5.723 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.005 4.005 26 C -0.196 4.196 27 S 0.115 5.885 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.396 0.604 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.054 0.946 40 H 0.035 0.965 41 H 0.383 0.617 42 H 0.255 0.745 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.434 5.896 -9.515 28.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.191 4.191 3 N -0.187 5.187 4 C -0.018 4.018 5 C -0.092 4.092 6 C -0.097 4.097 7 C -0.120 4.120 8 C 0.340 3.660 9 O -0.407 6.407 10 N -0.371 5.371 11 C -0.001 4.001 12 C -0.172 4.172 13 C 0.064 3.936 14 H 0.068 0.932 15 C -0.223 4.223 16 N -0.365 5.365 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.028 4.028 26 C -0.314 4.314 27 S 0.371 5.629 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.231 0.769 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.217 0.783 42 H 0.065 0.935 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -26.606 4.360 -9.532 28.597 hybrid contribution 1.214 0.629 0.430 1.433 sum -25.393 4.989 -9.102 27.432 Atomic orbital electron populations 1.20596 0.84620 1.04756 1.04438 1.26870 1.01984 0.91031 0.99223 1.66156 1.04098 1.31335 1.17130 1.19317 0.89167 0.91703 1.01621 1.20258 0.90129 0.98696 1.00090 1.20843 0.96106 0.95223 0.97564 1.19968 0.93590 0.93589 1.04899 1.17982 0.84873 0.85862 0.77301 1.90835 1.82659 1.17954 1.49226 1.46019 1.07341 1.09106 1.74641 1.21524 0.76853 0.97904 1.03832 1.22072 0.96981 0.96435 1.01678 1.20153 0.89688 0.92602 0.91200 0.93246 1.22424 1.01588 0.99172 0.99162 1.42442 1.36232 1.50421 1.07426 1.19173 1.05664 1.16636 0.95500 0.91258 1.24731 0.99483 1.00799 0.95903 1.69643 1.41210 1.46634 1.00592 0.86289 0.82380 0.81067 0.76580 1.21371 1.21768 1.21259 1.20453 0.88106 1.00700 0.93561 1.23746 0.98839 0.96786 1.12042 1.84052 0.95230 1.10040 1.73566 0.88970 0.89544 0.88820 0.84100 0.84201 0.76933 0.91539 0.89431 0.91521 0.91856 0.93518 0.92720 0.94580 0.78285 0.93512 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.44 36.01 0.38 0.01 16 2 C 0.09 0.79 7.29 -13.85 -0.10 0.69 16 3 N -0.47 -5.17 10.56 -8.96 -0.09 -5.26 16 4 C 0.10 1.17 7.00 -84.88 -0.59 0.58 16 5 C -0.07 -0.67 10.03 -39.33 -0.39 -1.07 16 6 C -0.08 -0.70 9.44 -39.74 -0.38 -1.08 16 7 C -0.11 -1.38 5.87 -105.00 -0.62 -1.99 16 8 C 0.55 8.32 7.76 -12.44 -0.10 8.22 16 9 O -0.53 -10.24 16.34 5.29 0.09 -10.16 16 10 N -0.72 -9.48 5.51 -61.33 -0.34 -9.82 16 11 C 0.12 1.97 5.56 -4.04 -0.02 1.94 16 12 C -0.13 -1.96 4.87 -26.73 -0.13 -2.09 16 13 C 0.17 3.27 2.89 -67.93 -0.20 3.07 16 14 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 15 C -0.16 -2.80 9.49 37.16 0.35 -2.45 16 16 N -0.72 -17.54 4.57 -53.42 -0.24 -17.78 16 17 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 21 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 C -0.01 -0.06 9.62 -38.98 -0.37 -0.44 16 26 C -0.20 -2.22 6.54 -38.61 -0.25 -2.47 16 27 S 0.11 1.00 23.11 -107.50 -2.48 -1.48 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.14 0.88 6.38 -52.49 -0.33 0.54 16 33 H 0.40 3.77 6.49 -40.82 -0.26 3.51 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 35 H 0.09 1.78 7.75 -51.93 -0.40 1.38 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.38 9.93 7.80 -40.82 -0.32 9.61 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.15 1.80 7.64 -52.48 -0.40 1.40 16 LS Contribution 377.86 15.07 5.69 5.69 Total: -1.00 -34.49 377.86 -10.27 -44.75 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.91 Total: 8.21 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -2.67 Total: -4.25 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: 0.05 Total: -60.40 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.48 Total: -1.48 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.49 -10.27 -44.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713420512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.745 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds