Wall clock time and date at job start Tue Mar 31 2020 16:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28053 * 124.24325 * 2 1 4 4 C 1.34412 * 117.91823 * 179.97438 * 3 2 1 5 5 C 1.41244 * 129.48387 * 180.02562 * 4 3 2 6 6 C 1.35748 * 120.63488 * 180.02562 * 5 4 3 7 7 C 1.40199 * 120.61787 * 359.97438 * 6 5 4 8 8 C 1.47597 * 120.12580 * 179.97438 * 7 6 5 9 9 O 1.21589 * 119.99542 * 180.02562 * 8 7 6 10 10 N 1.34770 * 120.00098 * 0.02562 * 8 7 6 11 11 C 1.46496 * 119.99871 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.47288 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47243 * 180.02562 * 12 11 10 14 14 H 1.08994 * 109.47294 * 54.99887 * 13 12 11 15 15 C 1.53006 * 109.47104 * 175.00526 * 13 12 11 16 16 N 1.46505 * 109.47024 * 294.99928 * 13 12 11 17 17 C 1.36931 * 119.99788 * 155.00126 * 16 13 12 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 13 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 13 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48496 * 109.47141 * 59.99751 * 21 19 17 23 23 H 1.48490 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 300.00028 * 21 19 17 25 25 C 1.39173 * 119.74503 * 0.23295 * 7 6 5 26 26 C 1.38918 * 119.84843 * 359.51487 * 25 7 6 27 27 S 1.70647 * 124.24114 * 179.97438 * 2 1 3 28 28 H 1.09002 * 109.47300 * 90.03176 * 1 2 3 29 29 H 1.08999 * 109.47256 * 210.02472 * 1 2 3 30 30 H 1.08994 * 109.47154 * 330.02757 * 1 2 3 31 31 H 1.07998 * 119.68621 * 359.97438 * 5 4 3 32 32 H 1.08002 * 119.69324 * 179.97438 * 6 5 4 33 33 H 0.97004 * 120.00257 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.46967 * 60.00147 * 11 10 8 35 35 H 1.09002 * 109.47323 * 299.99763 * 11 10 8 36 36 H 1.09003 * 109.47011 * 59.99676 * 12 11 10 37 37 H 1.09002 * 109.46836 * 300.00173 * 12 11 10 38 38 H 1.08994 * 109.47567 * 59.99528 * 15 13 12 39 39 H 1.08991 * 109.47054 * 180.02562 * 15 13 12 40 40 H 1.09004 * 109.46242 * 299.99533 * 15 13 12 41 41 H 0.97000 * 119.99792 * 334.99921 * 16 13 12 42 42 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 43 43 H 1.08005 * 120.07916 * 179.72425 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5762 1.8950 0.0011 6 6 5.8864 1.5397 0.0011 7 6 6.2597 0.1883 0.0010 8 6 7.6875 -0.1858 0.0004 9 8 8.0086 -1.3585 -0.0002 10 7 8.6352 0.7725 0.0004 11 6 10.0523 0.4011 0.0004 12 6 10.9114 1.6672 -0.0002 13 6 12.3913 1.2794 -0.0008 14 1 12.5930 0.6170 -0.8426 15 6 13.2489 2.5402 -0.1270 16 7 12.7164 0.5911 1.2509 17 6 13.7714 -0.2804 1.2990 18 1 14.3643 -0.4601 0.4143 19 6 14.0829 -0.9283 2.4866 20 7 13.3608 -0.7089 3.5648 21 14 15.5270 -2.1113 2.5542 22 1 16.7755 -1.3890 2.2013 23 1 15.6471 -2.6678 3.9256 24 1 15.3058 -3.2180 1.5891 25 6 5.2789 -0.7990 -0.0040 26 6 3.9368 -0.4404 0.0014 27 16 2.4672 -1.4107 0.0006 28 1 -0.3634 -0.0006 -1.0277 29 1 -0.3634 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.3057 2.9406 0.0008 32 1 6.6483 2.3052 0.0012 33 1 8.3790 1.7081 0.0005 34 1 10.2735 -0.1879 -0.8897 35 1 10.2736 -0.1881 0.8904 36 1 10.6902 2.2567 0.8896 37 1 10.6900 2.2561 -0.8903 38 1 13.0473 3.2026 0.7148 39 1 14.3032 2.2639 -0.1279 40 1 13.0071 3.0523 -1.0584 41 1 12.1841 0.7527 2.0456 42 1 13.5782 -1.1619 4.3946 43 1 5.5604 -1.8417 -0.0086 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713420512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:55:14 Heat of formation + Delta-G solvation = -0.659990 kcal Electronic energy + Delta-G solvation = -24579.216872 eV Core-core repulsion = 20942.798868 eV Total energy + Delta-G solvation = -3636.418004 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.77568 -40.65494 -38.25962 -37.79882 -35.94916 -34.18351 -32.80681 -32.33465 -31.12753 -30.03554 -28.93276 -25.91797 -25.42834 -24.78354 -23.39670 -22.52076 -21.70547 -21.13694 -19.84433 -19.26419 -18.62854 -17.42408 -16.96385 -16.93766 -16.50060 -16.29770 -16.18048 -15.65651 -15.37664 -15.31523 -15.07259 -14.59031 -14.40164 -14.24396 -14.15277 -13.97255 -13.62989 -13.52691 -13.23156 -13.11842 -12.78717 -12.61941 -12.49448 -12.30880 -12.23540 -12.11987 -12.00779 -11.65775 -11.58483 -11.32986 -11.15254 -10.91476 -10.78894 -10.22487 -9.75334 -9.27664 -8.96197 -7.91508 -5.17865 -1.01359 -0.01823 0.07711 0.56732 0.81730 1.46067 1.49068 1.54452 1.84119 2.04776 2.57887 2.62489 2.77786 3.42462 3.42738 3.55368 3.83714 3.93698 3.96513 4.00059 4.04123 4.22142 4.27998 4.38474 4.57087 4.64879 4.66845 4.69584 4.78638 4.85121 4.90949 4.97644 5.04625 5.05977 5.12073 5.13520 5.22754 5.37014 5.42380 5.46512 5.55408 5.64112 6.31495 6.44857 6.47413 7.13393 7.37537 8.16296 8.37111 9.31737 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021379 B = 0.002030 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.372901 B =13791.389261 C =14660.393041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.101 3.899 3 N -0.499 5.499 4 C 0.094 3.906 5 C -0.071 4.071 6 C -0.062 4.062 7 C -0.129 4.129 8 C 0.552 3.448 9 O -0.584 6.584 10 N -0.702 5.702 11 C 0.132 3.868 12 C -0.116 4.116 13 C 0.163 3.837 14 H 0.043 0.957 15 C -0.153 4.153 16 N -0.735 5.735 17 C -0.232 4.232 18 H 0.074 0.926 19 C -0.080 4.080 20 N -0.969 5.969 21 Si 0.966 3.034 22 H -0.277 1.277 23 H -0.298 1.298 24 H -0.282 1.282 25 C -0.016 4.016 26 C -0.221 4.221 27 S 0.132 5.868 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.100 0.900 31 H 0.168 0.832 32 H 0.174 0.826 33 H 0.417 0.583 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.076 0.924 41 H 0.372 0.628 42 H 0.248 0.752 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.096 8.097 -10.992 31.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.182 4.182 3 N -0.214 5.214 4 C -0.028 4.028 5 C -0.092 4.092 6 C -0.084 4.084 7 C -0.136 4.136 8 C 0.340 3.660 9 O -0.466 6.466 10 N -0.354 5.354 11 C 0.008 3.992 12 C -0.155 4.155 13 C 0.054 3.946 14 H 0.061 0.939 15 C -0.213 4.213 16 N -0.375 5.375 17 C -0.365 4.365 18 H 0.092 0.908 19 C -0.272 4.272 20 N -0.621 5.621 21 Si 0.796 3.204 22 H -0.203 1.203 23 H -0.225 1.225 24 H -0.209 1.209 25 C -0.039 4.039 26 C -0.340 4.340 27 S 0.389 5.611 28 H 0.129 0.871 29 H 0.126 0.874 30 H 0.119 0.881 31 H 0.185 0.815 32 H 0.192 0.808 33 H 0.256 0.744 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.095 0.905 41 H 0.204 0.796 42 H 0.057 0.943 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -28.274 6.624 -11.067 31.078 hybrid contribution 1.562 -0.045 0.795 1.753 sum -26.713 6.579 -10.273 29.366 Atomic orbital electron populations 1.20847 0.81623 1.06106 1.05972 1.27657 1.03600 0.90322 0.96612 1.66260 1.03907 1.32173 1.19074 1.19756 0.89988 0.92025 1.00995 1.20592 0.89668 0.99690 0.99239 1.21097 0.97018 0.94303 0.95963 1.19768 0.91491 0.95138 1.07170 1.18464 0.86254 0.85228 0.76020 1.90803 1.83642 1.20274 1.51859 1.45750 1.05835 1.10087 1.73703 1.21183 0.78843 0.98256 1.00926 1.21933 0.93505 0.95796 1.04217 1.20475 0.92761 0.92892 0.88452 0.93915 1.22258 0.99579 0.98151 1.01280 1.42645 1.35325 1.50577 1.08998 1.19565 1.05698 1.15935 0.95265 0.90818 1.25494 1.02417 1.03287 0.95990 1.69799 1.43126 1.48267 1.00882 0.85308 0.79894 0.79175 0.76015 1.20272 1.22482 1.20891 1.20412 0.88970 1.00254 0.94241 1.23899 0.99155 0.97863 1.13078 1.83972 0.94044 1.09907 1.73185 0.87129 0.87445 0.88144 0.81466 0.80835 0.74363 0.92712 0.94325 0.90698 0.87332 0.93572 0.94994 0.90510 0.79625 0.94332 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.52 10.44 71.24 0.74 0.23 16 2 C 0.10 1.55 7.29 88.66 0.65 2.19 16 3 N -0.50 -10.11 10.56 -182.20 -1.92 -12.04 16 4 C 0.09 2.03 7.00 39.95 0.28 2.31 16 5 C -0.07 -1.20 10.03 22.43 0.23 -0.97 16 6 C -0.06 -1.03 9.44 22.17 0.21 -0.82 16 7 C -0.13 -3.12 5.87 -20.11 -0.12 -3.24 16 8 C 0.55 16.96 7.76 86.71 0.67 17.63 16 9 O -0.58 -24.05 16.34 -3.99 -0.07 -24.11 16 10 N -0.70 -17.86 5.51 -466.21 -2.57 -20.43 16 11 C 0.13 4.28 5.56 86.38 0.48 4.76 16 12 C -0.12 -3.16 4.87 30.59 0.15 -3.01 16 13 C 0.16 5.92 2.89 44.99 0.13 6.05 16 14 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 15 C -0.15 -4.88 9.49 71.98 0.68 -4.19 16 16 N -0.73 -36.07 4.57 -322.93 -1.48 -37.55 16 17 C -0.23 -12.94 9.93 84.04 0.83 -12.11 16 18 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 19 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 20 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 21 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 24 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 25 C -0.02 -0.40 9.62 22.66 0.22 -0.18 16 26 C -0.22 -5.01 6.54 22.90 0.15 -4.86 16 27 S 0.13 2.22 23.11 -56.49 -1.31 0.91 16 28 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.17 1.51 6.38 -2.91 -0.02 1.50 16 33 H 0.42 6.77 6.49 -92.71 -0.60 6.17 16 34 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.04 1.65 7.75 -2.39 -0.02 1.63 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.37 19.77 7.80 -92.71 -0.72 19.04 16 42 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 43 H 0.13 3.59 7.64 -2.91 -0.02 3.56 16 Total: -1.00 -79.13 377.86 0.47 -78.67 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -0.27 Total: 25.74 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 5.77 Total: -0.43 kcal Atomic # 7 Polarization: -124.60 SS G_CDS: -5.68 Total: -130.28 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.07 Total: -24.11 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.31 Total: 0.91 kcal Total: -79.13 0.47 -78.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713420512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.007 kcal (2) G-P(sol) polarization free energy of solvation -79.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds