Wall clock time and date at job start Tue Mar 31 2020 18:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.47413 * 2 1 4 4 C 1.53004 * 109.46692 * 240.00065 * 2 1 3 5 5 N 1.46500 * 109.46931 * 65.00695 * 4 2 1 6 6 C 1.36943 * 119.99875 * 179.97438 * 5 4 2 7 7 H 1.07992 * 120.00237 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99900 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99963 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00120 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47006 * 60.00236 * 10 8 6 12 12 H 1.48497 * 109.47270 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47345 * 300.00902 * 10 8 6 14 14 C 1.52997 * 109.46996 * 120.00650 * 2 1 3 15 15 N 1.46497 * 109.47148 * 294.99694 * 14 2 1 16 16 C 1.34775 * 120.00205 * 180.02562 * 15 14 2 17 17 O 1.21762 * 120.00082 * 359.97438 * 16 15 14 18 18 C 1.46111 * 120.00057 * 179.97438 * 16 15 14 19 19 S 1.75821 * 125.47698 * 0.12319 * 18 16 15 20 20 C 1.70580 * 91.67391 * 180.22686 * 19 18 16 21 21 C 1.33584 * 111.17069 * 359.80299 * 20 19 18 22 22 C 1.37353 * 125.47863 * 179.97438 * 18 16 15 23 23 N 1.39885 * 123.48827 * 359.97438 * 22 18 16 24 24 C 1.36603 * 125.66869 * 309.42275 * 23 22 18 25 25 C 1.34845 * 108.19496 * 179.89045 * 24 23 22 26 26 C 1.40961 * 107.47121 * 0.36447 * 25 24 23 27 27 C 1.34837 * 107.47838 * 359.77046 * 26 25 24 28 28 H 1.09000 * 109.47573 * 59.99432 * 1 2 3 29 29 H 1.09001 * 109.47667 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47505 * 299.99852 * 1 2 3 31 31 H 1.09006 * 109.46964 * 184.99894 * 4 2 1 32 32 H 1.08995 * 109.47407 * 305.00120 * 4 2 1 33 33 H 0.96996 * 120.00346 * 359.97438 * 5 4 2 34 34 H 0.97000 * 119.99880 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46688 * 174.99873 * 14 2 1 36 36 H 1.09007 * 109.47300 * 54.99954 * 14 2 1 37 37 H 0.97001 * 120.00087 * 359.97438 * 15 14 2 38 38 H 1.07994 * 124.41451 * 179.82982 * 20 19 18 39 39 H 1.08003 * 122.45400 * 180.02562 * 21 20 19 40 40 H 1.08000 * 125.90329 * 0.02704 * 24 23 22 41 41 H 1.07999 * 126.26029 * 180.13908 * 25 24 23 42 42 H 1.08001 * 126.26099 * 179.77126 * 26 25 24 43 43 H 1.08004 * 125.90030 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0018 -0.4201 -3.6856 7 1 2.5634 -1.3370 -3.7866 8 6 1.6342 0.2966 -4.8161 9 7 0.9502 1.4144 -4.6931 10 14 2.1115 -0.3244 -6.5119 11 1 1.5198 -1.6687 -6.7314 12 1 1.6028 0.6142 -7.5441 13 1 3.5906 -0.4130 -6.6085 14 6 2.0399 -0.7214 1.2491 15 7 1.6524 0.0351 2.4423 16 6 1.9964 -0.4134 3.6658 17 8 2.6288 -1.4477 3.7795 18 6 1.6104 0.3414 4.8558 19 16 0.6978 1.8442 4.8594 20 6 0.7552 1.9333 6.5619 21 6 1.4159 0.8930 7.0775 22 6 1.8996 -0.0105 6.1516 23 7 2.6152 -1.1616 6.4975 24 6 2.3504 -2.4268 6.0559 25 6 3.2552 -3.2624 6.6049 26 6 4.1048 -2.4888 7.4214 27 6 3.6914 -1.2082 7.3375 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.1262 -0.7995 -1.2057 32 1 1.6052 -1.7198 -1.2953 33 1 1.1483 0.8592 -2.3518 34 1 0.6930 1.9150 -5.4831 35 1 3.1263 -0.7996 1.2054 36 1 1.6053 -1.7200 1.2950 37 1 1.1489 0.8592 2.3518 38 1 0.3146 2.7270 7.1468 39 1 1.5605 0.7673 8.1403 40 1 1.5553 -2.7088 5.3816 41 1 3.3153 -4.3296 6.4505 42 1 4.9351 -2.8549 8.0071 43 1 4.1343 -0.3650 7.8468 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714420246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:18 Heat of formation + Delta-G solvation = 65.752201 kcal Electronic energy + Delta-G solvation = -25187.549446 eV Core-core repulsion = 21554.011290 eV Total energy + Delta-G solvation = -3633.538155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66839 -39.73954 -37.99647 -36.80190 -34.44689 -32.61317 -32.14804 -30.35607 -29.54507 -28.75207 -26.63479 -25.61539 -24.69194 -22.67434 -21.60745 -21.33964 -20.44243 -20.22120 -19.20452 -18.82727 -17.50164 -17.07023 -16.15954 -15.83344 -15.55991 -15.15699 -14.75627 -14.57918 -14.30873 -14.08976 -13.83706 -13.65814 -13.47943 -13.22500 -13.01543 -12.71532 -12.63426 -12.38412 -12.33533 -12.09566 -12.06646 -11.59469 -11.09378 -10.93153 -10.73583 -10.61497 -10.48647 -10.23167 -10.02674 -9.70509 -9.69166 -9.37966 -9.10343 -8.88781 -8.41034 -8.12505 -6.94294 -5.78524 -3.07027 -0.11529 0.84432 1.25603 1.59174 2.41433 2.83311 2.90977 2.95875 3.06599 3.43860 3.48096 3.49190 4.33820 4.56031 4.57740 4.61859 4.91800 4.98040 5.14136 5.16364 5.24245 5.32614 5.34868 5.47684 5.56082 5.59086 5.66003 5.75076 5.90720 5.92686 6.05159 6.17521 6.23458 6.24640 6.32356 6.38178 6.61256 6.73641 6.82841 6.92251 7.13129 7.27861 7.35891 7.68867 7.97294 8.40645 9.51899 10.08694 10.43540 11.44421 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.002270 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.504764 B =12329.432695 C =13506.900122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 H 0.077 0.923 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.935 5.935 10 Si 0.908 3.092 11 H -0.286 1.286 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.129 3.871 15 N -0.718 5.718 16 C 0.581 3.419 17 O -0.512 6.512 18 C -0.279 4.279 19 S 0.252 5.748 20 C -0.219 4.219 21 C -0.150 4.150 22 C 0.184 3.816 23 N -0.390 5.390 24 C 0.051 3.949 25 C -0.210 4.210 26 C -0.186 4.186 27 C -0.023 4.023 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.040 0.960 31 H 0.021 0.979 32 H 0.023 0.977 33 H 0.384 0.616 34 H 0.256 0.744 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.396 0.604 38 H 0.179 0.821 39 H 0.152 0.848 40 H 0.158 0.842 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 1.281 28.410 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 H 0.095 0.905 4 C 0.033 3.967 5 N -0.375 5.375 6 C -0.371 4.371 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.584 5.584 10 Si 0.739 3.261 11 H -0.212 1.212 12 H -0.217 1.217 13 H -0.212 1.212 14 C 0.005 3.995 15 N -0.370 5.370 16 C 0.366 3.634 17 O -0.389 6.389 18 C -0.402 4.402 19 S 0.519 5.481 20 C -0.358 4.358 21 C -0.182 4.182 22 C 0.076 3.924 23 N -0.065 5.065 24 C -0.077 4.077 25 C -0.233 4.233 26 C -0.210 4.210 27 C -0.149 4.149 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.218 0.782 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.231 0.769 38 H 0.196 0.804 39 H 0.170 0.830 40 H 0.175 0.825 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.822 1.624 27.107 27.216 hybrid contribution 0.463 -0.350 0.195 0.612 sum -1.359 1.274 27.301 27.365 Atomic orbital electron populations 1.21801 0.94596 1.02050 1.01494 1.21570 0.96780 1.00555 0.94156 0.90481 1.20564 0.96653 0.94202 0.85275 1.42324 1.66941 1.27690 1.00565 1.19192 1.28739 1.05492 0.83640 0.91193 1.24735 1.00987 0.97399 0.97875 1.69643 1.43498 1.16596 1.28630 0.86249 0.78043 0.77710 0.84082 1.21249 1.21697 1.21249 1.21481 1.00423 0.95226 0.82330 1.45944 1.57487 1.27748 1.05772 1.16714 0.80089 0.84732 0.81852 1.90932 1.39211 1.23065 1.85734 1.24693 1.14555 1.04007 0.96928 1.83223 1.48160 1.15539 1.01140 1.25109 1.06170 1.03925 1.00549 1.19774 1.02079 0.95036 1.01326 1.16974 0.96020 0.88825 0.90548 1.40906 1.24087 1.04321 1.37210 1.21756 1.02903 0.81606 1.01400 1.20862 0.98971 0.99332 1.04177 1.20895 1.02722 0.92617 1.04812 1.21785 0.92887 0.99240 1.00977 0.90989 0.92689 0.94048 0.96078 0.95927 0.78210 0.93471 0.90984 0.90932 0.76890 0.80382 0.82991 0.82507 0.84562 0.84570 0.82389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.94 37.16 0.33 -1.70 16 2 C -0.11 -1.68 2.46 -90.62 -0.22 -1.90 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 4 C 0.16 3.16 5.65 -4.04 -0.02 3.14 16 5 N -0.73 -18.13 5.33 -59.91 -0.32 -18.45 16 6 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 7 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 8 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 9 N -0.93 -27.97 13.06 55.49 0.72 -27.24 16 10 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.13 1.75 5.06 -4.04 -0.02 1.73 16 15 N -0.72 -8.56 5.28 -61.79 -0.33 -8.89 16 16 C 0.58 7.71 7.72 -13.10 -0.10 7.60 16 17 O -0.51 -8.38 13.05 5.13 0.07 -8.31 16 18 C -0.28 -3.02 6.43 -36.75 -0.24 -3.25 16 19 S 0.25 1.74 22.13 -107.50 -2.38 -0.64 16 20 C -0.22 -1.28 10.90 29.10 0.32 -0.96 16 21 C -0.15 -1.15 9.97 -41.26 -0.41 -1.56 16 22 C 0.18 1.98 5.99 -84.55 -0.51 1.48 16 23 N -0.39 -4.79 2.65 -61.59 -0.16 -4.96 16 24 C 0.05 0.67 8.53 -16.63 -0.14 0.53 16 25 C -0.21 -2.62 10.86 -39.75 -0.43 -3.05 16 26 C -0.19 -2.12 10.86 -39.76 -0.43 -2.55 16 27 C -0.02 -0.26 11.24 -16.63 -0.19 -0.45 16 28 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.47 7.18 -51.93 -0.37 0.10 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.38 9.88 6.85 -40.82 -0.28 9.60 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.40 3.93 6.76 -40.82 -0.28 3.65 16 38 H 0.18 0.51 8.06 -52.49 -0.42 0.08 16 39 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 40 H 0.16 2.06 7.45 -52.49 -0.39 1.67 16 41 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 42 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -33.54 373.17 -10.00 -43.54 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -5.89 Total: 10.26 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: -2.31 Total: -8.29 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.08 Total: -59.53 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.07 Total: -8.31 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 1.74 SS G_CDS: -2.38 Total: -0.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.54 -10.00 -43.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714420246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.290 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds