Wall clock time and date at job start Tue Mar 31 2020 18:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08991 * 109.47413 * 2 1 4 4 C 1.53004 * 109.46692 * 240.00065 * 2 1 3 5 5 N 1.46500 * 109.46931 * 65.00695 * 4 2 1 6 6 C 1.36943 * 119.99875 * 179.97438 * 5 4 2 7 7 H 1.07992 * 120.00237 * 359.97438 * 6 5 4 8 8 C 1.38814 * 119.99900 * 179.97438 * 6 5 4 9 9 N 1.31618 * 119.99963 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00120 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47006 * 60.00236 * 10 8 6 12 12 H 1.48497 * 109.47270 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.47345 * 300.00902 * 10 8 6 14 14 C 1.52997 * 109.46996 * 120.00650 * 2 1 3 15 15 N 1.46497 * 109.47148 * 294.99694 * 14 2 1 16 16 C 1.34775 * 120.00205 * 180.02562 * 15 14 2 17 17 O 1.21762 * 120.00082 * 359.97438 * 16 15 14 18 18 C 1.46111 * 120.00057 * 179.97438 * 16 15 14 19 19 S 1.75821 * 125.47698 * 0.12319 * 18 16 15 20 20 C 1.70580 * 91.67391 * 180.22686 * 19 18 16 21 21 C 1.33584 * 111.17069 * 359.80299 * 20 19 18 22 22 C 1.37353 * 125.47863 * 179.97438 * 18 16 15 23 23 N 1.39885 * 123.48827 * 359.97438 * 22 18 16 24 24 C 1.36603 * 125.66869 * 309.42275 * 23 22 18 25 25 C 1.34845 * 108.19496 * 179.89045 * 24 23 22 26 26 C 1.40961 * 107.47121 * 0.36447 * 25 24 23 27 27 C 1.34837 * 107.47838 * 359.77046 * 26 25 24 28 28 H 1.09000 * 109.47573 * 59.99432 * 1 2 3 29 29 H 1.09001 * 109.47667 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47505 * 299.99852 * 1 2 3 31 31 H 1.09006 * 109.46964 * 184.99894 * 4 2 1 32 32 H 1.08995 * 109.47407 * 305.00120 * 4 2 1 33 33 H 0.96996 * 120.00346 * 359.97438 * 5 4 2 34 34 H 0.97000 * 119.99880 * 180.02562 * 9 8 6 35 35 H 1.09003 * 109.46688 * 174.99873 * 14 2 1 36 36 H 1.09007 * 109.47300 * 54.99954 * 14 2 1 37 37 H 0.97001 * 120.00087 * 359.97438 * 15 14 2 38 38 H 1.07994 * 124.41451 * 179.82982 * 20 19 18 39 39 H 1.08003 * 122.45400 * 180.02562 * 21 20 19 40 40 H 1.08000 * 125.90329 * 0.02704 * 24 23 22 41 41 H 1.07999 * 126.26029 * 180.13908 * 25 24 23 42 42 H 1.08001 * 126.26099 * 179.77126 * 26 25 24 43 43 H 1.08004 * 125.90030 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 1.6524 0.0355 -2.4424 6 6 2.0018 -0.4201 -3.6856 7 1 2.5634 -1.3370 -3.7866 8 6 1.6342 0.2966 -4.8161 9 7 0.9502 1.4144 -4.6931 10 14 2.1115 -0.3244 -6.5119 11 1 1.5198 -1.6687 -6.7314 12 1 1.6028 0.6142 -7.5441 13 1 3.5906 -0.4130 -6.6085 14 6 2.0399 -0.7214 1.2491 15 7 1.6524 0.0351 2.4423 16 6 1.9964 -0.4134 3.6658 17 8 2.6288 -1.4477 3.7795 18 6 1.6104 0.3414 4.8558 19 16 0.6978 1.8442 4.8594 20 6 0.7552 1.9333 6.5619 21 6 1.4159 0.8930 7.0775 22 6 1.8996 -0.0105 6.1516 23 7 2.6152 -1.1616 6.4975 24 6 2.3504 -2.4268 6.0559 25 6 3.2552 -3.2624 6.6049 26 6 4.1048 -2.4888 7.4214 27 6 3.6914 -1.2082 7.3375 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.1262 -0.7995 -1.2057 32 1 1.6052 -1.7198 -1.2953 33 1 1.1483 0.8592 -2.3518 34 1 0.6930 1.9150 -5.4831 35 1 3.1263 -0.7996 1.2054 36 1 1.6053 -1.7200 1.2950 37 1 1.1489 0.8592 2.3518 38 1 0.3146 2.7270 7.1468 39 1 1.5605 0.7673 8.1403 40 1 1.5553 -2.7088 5.3816 41 1 3.3153 -4.3296 6.4505 42 1 4.9351 -2.8549 8.0071 43 1 4.1343 -0.3650 7.8468 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714420246.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:17 Heat of formation + Delta-G solvation = 45.377484 kcal Electronic energy + Delta-G solvation = -25188.432960 eV Core-core repulsion = 21554.011290 eV Total energy + Delta-G solvation = -3634.421669 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.49792 -40.75494 -38.75968 -38.11289 -36.01371 -34.20725 -32.89901 -32.06182 -30.52370 -29.62542 -27.80780 -27.15006 -25.67085 -24.33733 -22.46196 -22.26988 -21.51623 -21.28399 -20.04685 -19.86950 -19.00329 -18.27280 -17.08235 -17.00401 -16.64879 -16.33873 -15.84675 -15.67389 -15.45939 -15.36179 -15.11648 -14.81620 -14.60082 -14.25183 -14.22984 -13.85841 -13.62276 -13.52816 -13.38321 -13.17753 -12.97307 -12.95859 -12.78023 -12.23612 -12.22145 -12.14332 -12.02926 -11.75589 -11.68075 -11.21794 -10.94232 -10.43188 -10.29389 -9.86394 -9.16077 -9.02405 -9.00274 -7.95976 -5.24269 -0.80707 0.22245 0.69580 0.94856 1.47460 1.50053 1.56078 1.56162 1.94493 1.99336 2.08793 2.15923 2.56229 3.37581 3.61444 3.68638 3.89491 3.91895 3.97848 4.03647 4.26796 4.32685 4.33888 4.49946 4.52380 4.65789 4.66084 4.71591 4.77203 4.90493 4.92785 4.97760 5.00503 5.09880 5.21696 5.34096 5.35127 5.38434 5.44171 5.49185 6.04540 6.24669 6.26686 6.33733 6.53441 7.01048 7.33689 8.08238 8.33016 9.27224 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.019393 B = 0.002270 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1443.504764 B =12329.432695 C =13506.900122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.095 4.095 3 H 0.079 0.921 4 C 0.158 3.842 5 N -0.741 5.741 6 C -0.248 4.248 7 H 0.073 0.927 8 C -0.073 4.073 9 N -0.967 5.967 10 Si 0.973 3.027 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.142 3.858 15 N -0.710 5.710 16 C 0.579 3.421 17 O -0.553 6.553 18 C -0.319 4.319 19 S 0.301 5.699 20 C -0.194 4.194 21 C -0.164 4.164 22 C 0.170 3.830 23 N -0.396 5.396 24 C 0.029 3.971 25 C -0.225 4.225 26 C -0.201 4.201 27 C -0.025 4.025 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.022 0.978 33 H 0.377 0.623 34 H 0.252 0.748 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.408 0.592 38 H 0.217 0.783 39 H 0.169 0.831 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.156 0.844 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.927 2.702 30.099 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.114 4.114 3 H 0.098 0.902 4 C 0.031 3.969 5 N -0.384 5.384 6 C -0.380 4.380 7 H 0.091 0.909 8 C -0.265 4.265 9 N -0.618 5.618 10 Si 0.801 3.199 11 H -0.205 1.205 12 H -0.220 1.220 13 H -0.205 1.205 14 C 0.018 3.982 15 N -0.362 5.362 16 C 0.366 3.634 17 O -0.433 6.433 18 C -0.442 4.442 19 S 0.569 5.431 20 C -0.333 4.333 21 C -0.194 4.194 22 C 0.061 3.939 23 N -0.071 5.071 24 C -0.099 4.099 25 C -0.249 4.249 26 C -0.225 4.225 27 C -0.150 4.150 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.040 0.960 33 H 0.210 0.790 34 H 0.061 0.939 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.244 0.756 38 H 0.234 0.766 39 H 0.186 0.814 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.173 0.827 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.207 3.052 28.816 29.061 hybrid contribution 0.556 -0.748 -0.249 0.965 sum -1.650 2.304 28.567 28.707 Atomic orbital electron populations 1.21735 0.93696 1.02085 1.01826 1.21344 0.97327 1.00089 0.92648 0.90240 1.20699 0.96492 0.94149 0.85575 1.42483 1.66812 1.27839 1.01274 1.19579 1.27984 1.05383 0.85067 0.90949 1.25532 1.01645 0.97886 1.01472 1.69789 1.44942 1.17801 1.29224 0.85230 0.77871 0.77196 0.79572 1.20485 1.21958 1.20539 1.21174 0.99668 0.95047 0.82358 1.45760 1.57466 1.27935 1.05006 1.17079 0.79313 0.84403 0.82622 1.90908 1.41059 1.24903 1.86389 1.24583 1.17257 1.06445 0.95872 1.83056 1.45955 1.12301 1.01787 1.25612 1.03797 1.03607 1.00271 1.19886 1.02810 0.95004 1.01721 1.17452 0.96217 0.88842 0.91383 1.41068 1.24449 1.04490 1.37052 1.21726 1.03367 0.82713 1.02115 1.21136 0.99285 0.99939 1.04539 1.21207 1.03326 0.92829 1.05164 1.22301 0.92312 1.00063 1.00367 0.93548 0.92829 0.90719 0.96338 0.96009 0.79016 0.93911 0.92015 0.91327 0.75554 0.76602 0.81374 0.83626 0.83949 0.82657 0.79714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.94 71.98 0.64 -3.14 16 2 C -0.09 -2.82 2.46 -10.79 -0.03 -2.85 16 3 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 4 C 0.16 6.23 5.65 86.38 0.49 6.72 16 5 N -0.74 -37.15 5.33 -343.44 -1.83 -38.98 16 6 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 7 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 8 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 9 N -0.97 -58.45 13.06 21.65 0.28 -58.17 16 10 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 13 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 14 C 0.14 3.82 5.06 86.38 0.44 4.26 16 15 N -0.71 -16.38 5.28 -467.61 -2.47 -18.85 16 16 C 0.58 15.33 7.72 86.29 0.67 15.99 16 17 O -0.55 -18.72 13.05 -4.55 -0.06 -18.78 16 18 C -0.32 -6.56 6.43 24.11 0.15 -6.40 16 19 S 0.30 3.24 22.13 -56.49 -1.25 1.99 16 20 C -0.19 -1.47 10.90 66.76 0.73 -0.75 16 21 C -0.16 -2.05 9.97 21.18 0.21 -1.84 16 22 C 0.17 3.47 5.99 37.62 0.23 3.69 16 23 N -0.40 -9.68 2.65 -348.77 -0.92 -10.60 16 24 C 0.03 0.79 8.53 83.17 0.71 1.50 16 25 C -0.23 -5.82 10.86 22.16 0.24 -5.58 16 26 C -0.20 -4.54 10.86 22.16 0.24 -4.30 16 27 C -0.02 -0.53 11.24 83.17 0.94 0.41 16 28 H 0.05 1.55 7.18 -2.39 -0.02 1.53 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.07 1.56 7.18 -2.39 -0.02 1.54 16 31 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 33 H 0.38 19.72 6.85 -92.71 -0.63 19.08 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.41 7.36 6.76 -92.71 -0.63 6.73 16 38 H 0.22 -0.02 8.06 -2.91 -0.02 -0.04 16 39 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 40 H 0.15 4.16 7.45 -2.91 -0.02 4.14 16 41 H 0.14 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.16 2.72 8.06 -2.91 -0.02 2.69 16 43 H 0.19 2.74 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -74.10 373.17 2.51 -71.59 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: -0.22 Total: 32.72 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 6.96 Total: -9.07 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -4.94 Total: -126.60 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.25 Total: 1.99 kcal Total: -74.10 2.51 -71.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714420246.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.964 kcal (2) G-P(sol) polarization free energy of solvation -74.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds