Wall clock time and date at job start Tue Mar 31 2020 18:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46828 * 2 1 4 4 C 1.52999 * 109.47251 * 120.00232 * 2 1 3 5 5 N 1.46500 * 109.46678 * 294.99877 * 4 2 1 6 6 C 1.36947 * 119.99647 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99535 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99711 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99727 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00235 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47148 * 90.00181 * 10 8 6 12 12 H 1.48506 * 109.47322 * 210.00070 * 10 8 6 13 13 H 1.48498 * 109.47483 * 330.00268 * 10 8 6 14 14 C 1.53006 * 109.46811 * 240.00037 * 2 1 3 15 15 N 1.46504 * 109.46883 * 65.00265 * 14 2 1 16 16 C 1.34775 * 119.99531 * 179.97438 * 15 14 2 17 17 O 1.21766 * 120.00255 * 359.97438 * 16 15 14 18 18 C 1.46109 * 119.99831 * 179.97438 * 16 15 14 19 19 S 1.75813 * 125.47897 * 359.69717 * 18 16 15 20 20 C 1.70568 * 91.67735 * 179.91293 * 19 18 16 21 21 C 1.33577 * 111.17451 * 0.35689 * 20 19 18 22 22 C 1.37353 * 125.47807 * 180.02562 * 18 16 15 23 23 N 1.39881 * 123.48934 * 359.97438 * 22 18 16 24 24 C 1.36607 * 125.67155 * 309.69890 * 23 22 18 25 25 C 1.34845 * 108.19404 * 179.86278 * 24 23 22 26 26 C 1.40965 * 107.47705 * 0.39147 * 25 24 23 27 27 C 1.34842 * 107.47177 * 359.75950 * 26 25 24 28 28 H 1.09009 * 109.47170 * 60.00031 * 1 2 3 29 29 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46911 * 299.99883 * 1 2 3 31 31 H 1.09003 * 109.47054 * 54.99952 * 4 2 1 32 32 H 1.08997 * 109.47369 * 175.00033 * 4 2 1 33 33 H 0.96991 * 120.00438 * 0.02562 * 5 4 2 34 34 H 0.96995 * 119.99646 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47002 * 184.99763 * 14 2 1 36 36 H 1.08993 * 109.46955 * 305.00200 * 14 2 1 37 37 H 0.96992 * 119.99966 * 359.97438 * 15 14 2 38 38 H 1.08000 * 124.41680 * 180.08615 * 20 19 18 39 39 H 1.08004 * 122.46320 * 179.74913 * 21 20 19 40 40 H 1.08003 * 125.90158 * 0.02562 * 24 23 22 41 41 H 1.08001 * 126.25856 * 180.18210 * 25 24 23 42 42 H 1.07998 * 126.26410 * 179.71808 * 26 25 24 43 43 H 1.07997 * 125.90205 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0354 2.4423 6 6 2.0011 -0.4209 3.6856 7 1 2.5621 -1.3382 3.7864 8 6 1.6334 0.2958 4.8161 9 7 1.9690 -0.1425 6.0110 10 14 0.6637 1.8827 4.6416 11 1 -0.7899 1.5797 4.6648 12 1 0.9976 2.7932 5.7663 13 1 1.0124 2.5370 3.3549 14 6 2.0399 -0.7213 -1.2493 15 7 1.6524 0.0354 -2.4424 16 6 1.9963 -0.4130 -3.6659 17 8 2.6296 -1.4468 -3.7797 18 6 1.6093 0.3413 -4.8559 19 16 0.6918 1.8410 -4.8597 20 6 0.7476 1.9293 -6.5622 21 6 1.4083 0.8892 -7.0779 22 6 1.8984 -0.0105 -6.1518 23 7 2.6157 -1.1605 -6.4976 24 6 3.8151 -1.5412 -5.9660 25 6 4.1846 -2.7003 -6.5477 26 6 3.1835 -3.0449 -7.4783 27 6 2.2362 -2.0865 -7.4274 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -1.7199 1.2951 32 1 3.1263 -0.7995 1.2056 33 1 1.1483 0.8590 2.3517 34 1 1.7124 0.3585 6.8009 35 1 3.1263 -0.7995 -1.2057 36 1 1.6053 -1.7197 -1.2952 37 1 1.1483 0.8591 -2.3518 38 1 0.3027 2.7206 -7.1473 39 1 1.5490 0.7612 -8.1411 40 1 4.3701 -1.0076 -5.2086 41 1 5.0847 -3.2602 -6.3410 42 1 3.1767 -3.9165 -8.1160 43 1 1.3336 -2.0561 -8.0196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714420252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:22 Heat of formation + Delta-G solvation = 70.260418 kcal Electronic energy + Delta-G solvation = -25266.271515 eV Core-core repulsion = 21632.928851 eV Total energy + Delta-G solvation = -3633.342664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70683 -39.80620 -38.05534 -36.95820 -34.59068 -32.65053 -32.18964 -30.73229 -29.71415 -28.79305 -26.78742 -25.86139 -24.76084 -22.37960 -21.60761 -21.36215 -20.49359 -20.36745 -19.24602 -18.97974 -17.54987 -17.50388 -16.22349 -15.94218 -15.63508 -15.19224 -14.82320 -14.54867 -14.44671 -14.18221 -13.92340 -13.72375 -13.51972 -13.29408 -13.15879 -12.77348 -12.63350 -12.52743 -12.38786 -12.24749 -12.09670 -11.65900 -11.49333 -11.10342 -10.82745 -10.68419 -10.66196 -10.25250 -10.11603 -9.75058 -9.60891 -9.43730 -9.17646 -8.92969 -8.44739 -8.15562 -7.26319 -5.78966 -3.14932 -0.16852 0.78887 1.20041 1.54434 2.37722 2.78959 2.84953 2.88862 3.03706 3.33227 3.35294 3.41918 4.28304 4.50674 4.55887 4.56134 4.79805 4.87757 5.02219 5.09810 5.16422 5.20857 5.30325 5.43864 5.50984 5.55154 5.60396 5.62573 5.67860 5.80630 5.81483 5.99952 6.15726 6.20871 6.21649 6.26083 6.38930 6.61061 6.70136 6.89188 7.09589 7.20238 7.32338 7.90621 7.97243 8.39874 9.18475 9.90450 10.09925 11.39486 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.002439 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.251382 B =11476.254729 C =12710.994730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.116 4.116 3 H 0.076 0.924 4 C 0.166 3.834 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.091 0.909 8 C 0.004 3.996 9 N -0.934 5.934 10 Si 0.885 3.115 11 H -0.284 1.284 12 H -0.291 1.291 13 H -0.278 1.278 14 C 0.129 3.871 15 N -0.719 5.719 16 C 0.581 3.419 17 O -0.510 6.510 18 C -0.280 4.280 19 S 0.249 5.751 20 C -0.218 4.218 21 C -0.150 4.150 22 C 0.186 3.814 23 N -0.391 5.391 24 C 0.050 3.950 25 C -0.209 4.209 26 C -0.185 4.185 27 C -0.024 4.024 28 H 0.043 0.957 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.361 0.639 34 H 0.260 0.740 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.396 0.604 38 H 0.179 0.821 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.137 0.863 42 H 0.137 0.863 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.339 4.818 -31.650 32.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.135 4.135 3 H 0.095 0.905 4 C 0.038 3.962 5 N -0.400 5.400 6 C -0.374 4.374 7 H 0.109 0.891 8 C -0.192 4.192 9 N -0.582 5.582 10 Si 0.715 3.285 11 H -0.211 1.211 12 H -0.217 1.217 13 H -0.204 1.204 14 C 0.006 3.994 15 N -0.371 5.371 16 C 0.367 3.633 17 O -0.387 6.387 18 C -0.403 4.403 19 S 0.516 5.484 20 C -0.356 4.356 21 C -0.182 4.182 22 C 0.078 3.922 23 N -0.066 5.066 24 C -0.077 4.077 25 C -0.233 4.233 26 C -0.210 4.210 27 C -0.149 4.149 28 H 0.062 0.938 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.194 0.806 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.230 0.770 38 H 0.196 0.804 39 H 0.171 0.829 40 H 0.175 0.825 41 H 0.155 0.845 42 H 0.155 0.845 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.583 5.098 -30.304 30.938 hybrid contribution -0.449 0.756 -1.102 1.410 sum -4.032 5.854 -31.406 32.200 Atomic orbital electron populations 1.21826 0.94719 1.02411 1.01205 1.21625 0.96696 1.00608 0.94560 0.90520 1.20541 0.97253 0.94243 0.84186 1.42680 1.67904 1.27086 1.02342 1.19064 1.29566 1.07075 0.81685 0.89149 1.24681 1.00811 0.98616 0.95108 1.69703 1.51242 1.40279 0.96930 0.86548 0.80431 0.84634 0.76893 1.21062 1.21699 1.20409 1.21459 1.00575 0.95283 0.82113 1.45931 1.57663 1.27722 1.05789 1.16707 0.80127 0.84699 0.81803 1.90941 1.39174 1.22933 1.85683 1.24667 1.13399 1.04957 0.97228 1.83177 1.47657 1.16337 1.01226 1.25101 1.06068 1.04004 1.00471 1.19785 1.02775 0.94182 1.01457 1.16978 0.96004 0.88487 0.90727 1.40913 1.16884 1.16524 1.32292 1.21769 0.86887 0.98646 1.00368 1.20875 1.02076 0.98029 1.02308 1.20905 0.96080 1.00488 1.03504 1.21783 1.02246 0.92400 0.98495 0.93772 0.92207 0.91692 0.95027 0.95190 0.80644 0.93034 0.90726 0.90760 0.76967 0.80373 0.82944 0.82468 0.84516 0.84539 0.82388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 8.94 37.16 0.33 -1.55 16 2 C -0.12 -1.61 2.46 -90.62 -0.22 -1.83 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.17 3.07 5.65 -4.04 -0.02 3.04 16 5 N -0.75 -17.46 5.13 -59.91 -0.31 -17.77 16 6 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 7 H 0.09 2.74 8.06 -52.49 -0.42 2.31 16 8 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 9 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 10 Si 0.88 21.75 27.73 -169.99 -4.71 17.03 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 14 C 0.13 1.64 5.06 -4.04 -0.02 1.62 16 15 N -0.72 -8.01 5.28 -61.79 -0.33 -8.34 16 16 C 0.58 7.36 7.72 -13.10 -0.10 7.26 16 17 O -0.51 -8.07 13.02 5.13 0.07 -8.01 16 18 C -0.28 -2.88 6.43 -36.75 -0.24 -3.12 16 19 S 0.25 1.58 22.13 -107.50 -2.38 -0.80 16 20 C -0.22 -1.18 10.90 29.10 0.32 -0.86 16 21 C -0.15 -1.09 9.97 -41.26 -0.41 -1.50 16 22 C 0.19 1.92 5.99 -84.55 -0.51 1.42 16 23 N -0.39 -4.66 2.65 -61.59 -0.16 -4.83 16 24 C 0.05 0.65 8.53 -16.63 -0.14 0.51 16 25 C -0.21 -2.56 10.86 -39.75 -0.43 -2.99 16 26 C -0.18 -2.06 10.86 -39.75 -0.43 -2.50 16 27 C -0.02 -0.26 11.24 -16.63 -0.19 -0.44 16 28 H 0.04 0.45 7.18 -51.92 -0.37 0.08 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.96 7.18 -51.93 -0.37 0.58 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.36 8.05 4.71 -40.82 -0.19 7.85 16 34 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.40 3.57 6.75 -40.82 -0.28 3.29 16 38 H 0.18 0.44 8.06 -52.49 -0.42 0.01 16 39 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 40 H 0.16 2.03 7.43 -52.48 -0.39 1.64 16 41 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 43 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 370.00 15.07 5.58 5.58 Total: -1.00 -34.56 370.00 -9.64 -44.19 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -5.85 Total: 9.42 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -2.32 Total: -7.97 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.02 Total: -59.44 kcal Atomic # 8 Polarization: -8.07 SS G_CDS: 0.07 Total: -8.01 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: 1.58 SS G_CDS: -2.38 Total: -0.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.56 -9.64 -44.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714420252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.453 kcal (2) G-P(sol) polarization free energy of solvation -34.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds