Wall clock time and date at job start Tue Mar 31 2020 18:45:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46828 * 2 1 4 4 C 1.52999 * 109.47251 * 120.00232 * 2 1 3 5 5 N 1.46500 * 109.46678 * 294.99877 * 4 2 1 6 6 C 1.36947 * 119.99647 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99535 * 0.02562 * 6 5 4 8 8 C 1.38808 * 119.99711 * 180.02562 * 6 5 4 9 9 N 1.31625 * 119.99727 * 180.02562 * 8 6 5 10 10 Si 1.86795 * 120.00235 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.47148 * 90.00181 * 10 8 6 12 12 H 1.48506 * 109.47322 * 210.00070 * 10 8 6 13 13 H 1.48498 * 109.47483 * 330.00268 * 10 8 6 14 14 C 1.53006 * 109.46811 * 240.00037 * 2 1 3 15 15 N 1.46504 * 109.46883 * 65.00265 * 14 2 1 16 16 C 1.34775 * 119.99531 * 179.97438 * 15 14 2 17 17 O 1.21766 * 120.00255 * 359.97438 * 16 15 14 18 18 C 1.46109 * 119.99831 * 179.97438 * 16 15 14 19 19 S 1.75813 * 125.47897 * 359.69717 * 18 16 15 20 20 C 1.70568 * 91.67735 * 179.91293 * 19 18 16 21 21 C 1.33577 * 111.17451 * 0.35689 * 20 19 18 22 22 C 1.37353 * 125.47807 * 180.02562 * 18 16 15 23 23 N 1.39881 * 123.48934 * 359.97438 * 22 18 16 24 24 C 1.36607 * 125.67155 * 309.69890 * 23 22 18 25 25 C 1.34845 * 108.19404 * 179.86278 * 24 23 22 26 26 C 1.40965 * 107.47705 * 0.39147 * 25 24 23 27 27 C 1.34842 * 107.47177 * 359.75950 * 26 25 24 28 28 H 1.09009 * 109.47170 * 60.00031 * 1 2 3 29 29 H 1.09001 * 109.47273 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46911 * 299.99883 * 1 2 3 31 31 H 1.09003 * 109.47054 * 54.99952 * 4 2 1 32 32 H 1.08997 * 109.47369 * 175.00033 * 4 2 1 33 33 H 0.96991 * 120.00438 * 0.02562 * 5 4 2 34 34 H 0.96995 * 119.99646 * 179.97438 * 9 8 6 35 35 H 1.09001 * 109.47002 * 184.99763 * 14 2 1 36 36 H 1.08993 * 109.46955 * 305.00200 * 14 2 1 37 37 H 0.96992 * 119.99966 * 359.97438 * 15 14 2 38 38 H 1.08000 * 124.41680 * 180.08615 * 20 19 18 39 39 H 1.08004 * 122.46320 * 179.74913 * 21 20 19 40 40 H 1.08003 * 125.90158 * 0.02562 * 24 23 22 41 41 H 1.08001 * 126.25856 * 180.18210 * 25 24 23 42 42 H 1.07998 * 126.26410 * 179.71808 * 26 25 24 43 43 H 1.07997 * 125.90205 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 0.0354 2.4423 6 6 2.0011 -0.4209 3.6856 7 1 2.5621 -1.3382 3.7864 8 6 1.6334 0.2958 4.8161 9 7 1.9690 -0.1425 6.0110 10 14 0.6637 1.8827 4.6416 11 1 -0.7899 1.5797 4.6648 12 1 0.9976 2.7932 5.7663 13 1 1.0124 2.5370 3.3549 14 6 2.0399 -0.7213 -1.2493 15 7 1.6524 0.0354 -2.4424 16 6 1.9963 -0.4130 -3.6659 17 8 2.6296 -1.4468 -3.7797 18 6 1.6093 0.3413 -4.8559 19 16 0.6918 1.8410 -4.8597 20 6 0.7476 1.9293 -6.5622 21 6 1.4083 0.8892 -7.0779 22 6 1.8984 -0.0105 -6.1518 23 7 2.6157 -1.1605 -6.4976 24 6 3.8151 -1.5412 -5.9660 25 6 4.1846 -2.7003 -6.5477 26 6 3.1835 -3.0449 -7.4783 27 6 2.2362 -2.0865 -7.4274 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6054 -1.7199 1.2951 32 1 3.1263 -0.7995 1.2056 33 1 1.1483 0.8590 2.3517 34 1 1.7124 0.3585 6.8009 35 1 3.1263 -0.7995 -1.2057 36 1 1.6053 -1.7197 -1.2952 37 1 1.1483 0.8591 -2.3518 38 1 0.3027 2.7206 -7.1473 39 1 1.5490 0.7612 -8.1411 40 1 4.3701 -1.0076 -5.2086 41 1 5.0847 -3.2602 -6.3410 42 1 3.1767 -3.9165 -8.1160 43 1 1.3336 -2.0561 -8.0196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714420252.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:21 Heat of formation + Delta-G solvation = 48.230931 kcal Electronic energy + Delta-G solvation = -25267.226785 eV Core-core repulsion = 21632.928851 eV Total energy + Delta-G solvation = -3634.297934 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.50337 -40.76370 -38.78774 -38.19575 -36.09705 -34.25406 -32.91089 -32.52237 -30.57059 -29.63602 -27.91304 -27.27210 -25.62738 -24.03028 -22.46530 -22.27868 -21.64624 -21.29181 -20.15389 -19.98781 -19.29782 -18.27278 -17.08264 -17.03513 -16.65091 -16.35714 -15.86854 -15.74857 -15.54578 -15.35830 -15.02685 -14.89037 -14.62192 -14.32097 -14.24599 -13.98379 -13.70690 -13.59819 -13.41301 -13.21156 -13.18112 -12.97094 -12.86606 -12.29320 -12.18376 -12.08774 -12.01473 -11.78611 -11.72346 -11.22941 -10.99129 -10.43911 -10.30001 -9.86693 -9.31338 -9.15898 -9.02932 -8.03126 -5.37707 -0.81242 0.21867 0.68800 0.94038 1.36980 1.42509 1.49775 1.55703 1.93354 1.99199 2.08017 2.15228 2.48643 3.27949 3.50243 3.62118 3.88692 3.89035 3.93847 4.00067 4.09983 4.27127 4.32835 4.47277 4.51782 4.63773 4.65603 4.71340 4.76856 4.88725 4.92357 4.96742 4.98322 5.06711 5.18983 5.28354 5.34535 5.37921 5.41361 5.74752 6.03772 6.20302 6.24009 6.33296 6.53090 7.01342 7.07196 7.81543 8.02809 9.18535 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.002439 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.251382 B =11476.254729 C =12710.994730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 H 0.089 0.911 4 C 0.160 3.840 5 N -0.753 5.753 6 C -0.238 4.238 7 H 0.052 0.948 8 C -0.067 4.067 9 N -0.986 5.986 10 Si 0.959 3.041 11 H -0.275 1.275 12 H -0.297 1.297 13 H -0.245 1.245 14 C 0.140 3.860 15 N -0.709 5.709 16 C 0.578 3.422 17 O -0.553 6.553 18 C -0.320 4.320 19 S 0.305 5.695 20 C -0.195 4.195 21 C -0.164 4.164 22 C 0.169 3.831 23 N -0.396 5.396 24 C 0.029 3.971 25 C -0.226 4.226 26 C -0.201 4.201 27 C -0.024 4.024 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.369 0.631 34 H 0.258 0.742 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.409 0.591 38 H 0.217 0.783 39 H 0.168 0.832 40 H 0.146 0.854 41 H 0.142 0.858 42 H 0.156 0.844 43 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.788 7.892 -34.596 35.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.107 0.893 4 C 0.033 3.967 5 N -0.400 5.400 6 C -0.369 4.369 7 H 0.070 0.930 8 C -0.259 4.259 9 N -0.636 5.636 10 Si 0.786 3.214 11 H -0.201 1.201 12 H -0.223 1.223 13 H -0.170 1.170 14 C 0.016 3.984 15 N -0.361 5.361 16 C 0.365 3.635 17 O -0.433 6.433 18 C -0.442 4.442 19 S 0.573 5.427 20 C -0.333 4.333 21 C -0.195 4.195 22 C 0.060 3.940 23 N -0.071 5.071 24 C -0.099 4.099 25 C -0.250 4.250 26 C -0.225 4.225 27 C -0.150 4.150 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.203 0.797 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.245 0.755 38 H 0.234 0.766 39 H 0.185 0.815 40 H 0.163 0.837 41 H 0.160 0.840 42 H 0.173 0.827 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -6.054 8.204 -33.301 34.827 hybrid contribution 0.332 -0.239 -0.221 0.465 sum -5.722 7.965 -33.522 34.927 Atomic orbital electron populations 1.21824 0.93524 1.02463 1.02234 1.21409 0.97507 1.00487 0.92380 0.89264 1.20679 0.96963 0.94194 0.84827 1.42610 1.67842 1.27671 1.01832 1.19026 1.28226 1.05668 0.84003 0.92985 1.25600 1.02677 1.03069 0.94515 1.69906 1.53361 1.42343 0.97988 0.85349 0.78705 0.79400 0.77981 1.20133 1.22345 1.16967 1.21173 0.99899 0.94977 0.82397 1.45726 1.57561 1.27919 1.04912 1.17082 0.79341 0.84384 0.82651 1.90919 1.41041 1.24920 1.86373 1.24580 1.16001 1.07472 0.96116 1.82959 1.45240 1.12870 1.01630 1.25606 1.03730 1.03637 1.00375 1.19886 1.03581 0.94218 1.01808 1.17461 0.96259 0.88577 0.91657 1.41069 1.16583 1.17303 1.32122 1.21718 0.87991 0.99278 1.00907 1.21139 1.02840 0.98155 1.02845 1.21208 0.95981 1.01530 1.03829 1.22298 1.02835 0.91786 0.98043 0.90378 0.92764 0.92931 0.95715 0.95842 0.79715 0.93294 0.91704 0.91693 0.75453 0.76635 0.81477 0.83664 0.84043 0.82680 0.79655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 8.94 71.98 0.64 -2.72 16 2 C -0.10 -2.58 2.46 -10.79 -0.03 -2.60 16 3 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 4 C 0.16 5.91 5.65 86.38 0.49 6.40 16 5 N -0.75 -34.36 5.13 -343.45 -1.76 -36.12 16 6 C -0.24 -13.67 10.47 84.03 0.88 -12.79 16 7 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 8 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 9 N -0.99 -63.53 13.97 21.65 0.30 -63.23 16 10 Si 0.96 44.36 27.73 68.60 1.90 46.26 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 13 H -0.25 -9.93 6.52 99.48 0.65 -9.28 16 14 C 0.14 3.46 5.06 86.38 0.44 3.89 16 15 N -0.71 -14.73 5.28 -467.59 -2.47 -17.20 16 16 C 0.58 14.41 7.72 86.29 0.67 15.07 16 17 O -0.55 -18.10 13.02 -4.56 -0.06 -18.16 16 18 C -0.32 -6.09 6.43 24.10 0.15 -5.94 16 19 S 0.31 2.73 22.13 -56.49 -1.25 1.48 16 20 C -0.20 -1.23 10.90 66.76 0.73 -0.51 16 21 C -0.16 -1.90 9.97 21.18 0.21 -1.69 16 22 C 0.17 3.28 5.99 37.62 0.23 3.50 16 23 N -0.40 -9.39 2.65 -348.76 -0.93 -10.31 16 24 C 0.03 0.79 8.53 83.17 0.71 1.49 16 25 C -0.23 -5.78 10.86 22.16 0.24 -5.54 16 26 C -0.20 -4.46 10.86 22.16 0.24 -4.22 16 27 C -0.02 -0.49 11.24 83.17 0.94 0.44 16 28 H 0.08 1.30 7.18 -2.38 -0.02 1.29 16 29 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.39 7.18 -2.39 -0.02 1.37 16 31 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.37 15.57 4.71 -92.72 -0.44 15.13 16 34 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 35 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.41 6.17 6.75 -92.71 -0.63 5.54 16 38 H 0.22 -0.27 8.06 -2.91 -0.02 -0.29 16 39 H 0.17 1.37 8.06 -2.91 -0.02 1.35 16 40 H 0.15 4.11 7.43 -2.91 -0.02 4.09 16 41 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 42 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 43 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -78.85 370.00 2.65 -76.19 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.08 Total: 29.80 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 7.00 Total: -8.70 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -4.86 Total: -126.87 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.06 Total: -18.16 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.25 Total: 1.48 kcal Total: -78.85 2.65 -76.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714420252.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.424 kcal (2) G-P(sol) polarization free energy of solvation -78.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds