Wall clock time and date at job start Tue Mar 31 2020 18:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47275 * 2 1 4 4 C 1.52996 * 109.47479 * 239.99456 * 2 1 3 5 5 C 1.53000 * 109.47455 * 175.00108 * 4 2 1 6 6 N 1.46500 * 109.47048 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00260 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99645 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00337 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47480 * 179.97438 * 9 7 6 11 11 N 1.28736 * 121.08436 * 89.97164 * 10 9 7 12 12 S 1.69387 * 108.98436 * 180.02562 * 11 10 9 13 13 C 1.76506 * 96.12023 * 0.02562 * 12 11 10 14 14 C 1.38793 * 133.55703 * 180.02562 * 13 12 11 15 15 C 1.36714 * 119.75470 * 179.97438 * 14 13 12 16 16 C 1.38977 * 120.15465 * 359.97438 * 15 14 13 17 17 C 1.36037 * 121.15817 * 359.97438 * 16 15 14 18 18 C 1.40803 * 105.52227 * 0.22884 * 13 12 11 19 19 N 1.46511 * 109.47147 * 119.99499 * 2 1 3 20 20 C 1.36929 * 119.99889 * 275.00167 * 19 2 1 21 21 H 1.07998 * 120.00605 * 359.97438 * 20 19 2 22 22 C 1.38814 * 119.99901 * 179.97438 * 20 19 2 23 23 N 1.31623 * 119.99709 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00254 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47163 * 89.99839 * 24 22 20 26 26 H 1.48500 * 109.46885 * 209.99898 * 24 22 20 27 27 H 1.48505 * 109.46878 * 329.99910 * 24 22 20 28 28 H 1.08997 * 109.47456 * 60.00373 * 1 2 3 29 29 H 1.08996 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47081 * 300.00495 * 1 2 3 31 31 H 1.09000 * 109.46768 * 54.99624 * 4 2 1 32 32 H 1.09007 * 109.47055 * 295.00533 * 4 2 1 33 33 H 1.08991 * 109.47158 * 60.00417 * 5 4 2 34 34 H 1.09000 * 109.46913 * 299.99718 * 5 4 2 35 35 H 0.97008 * 119.99804 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47369 * 60.00290 * 9 7 6 37 37 H 1.09005 * 109.47168 * 299.99743 * 9 7 6 38 38 H 1.07996 * 120.11863 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.92210 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.41792 * 180.02562 * 16 15 14 41 41 H 1.08002 * 119.89191 * 180.02562 * 17 16 15 42 42 H 0.97003 * 119.99440 * 94.99562 * 19 2 1 43 43 H 0.97001 * 119.99505 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 7 4.0531 -1.3036 -2.5100 7 6 5.3739 -1.3389 -2.7758 8 8 6.1582 -0.7989 -2.0247 9 6 5.8761 -2.0484 -4.0067 10 6 7.3779 -1.9412 -4.0709 11 7 8.1317 -2.8290 -3.5223 12 16 9.7528 -2.4096 -3.7780 13 6 9.4240 -0.9332 -4.6877 14 6 10.2341 0.0268 -5.2781 15 6 9.6663 1.0852 -5.9312 16 6 8.2832 1.1998 -6.0046 17 6 7.4688 0.2710 -5.4347 18 6 8.0209 -0.8313 -4.7463 19 7 2.0183 -0.6906 1.1963 20 6 2.1490 -0.0073 2.3758 21 1 1.8926 1.0406 2.4242 22 6 2.6112 -0.6618 3.5094 23 7 2.9243 -1.9388 3.4503 24 14 2.7903 0.2704 5.1183 25 1 1.5226 0.1803 5.8863 26 1 3.8945 -0.3235 5.9141 27 1 3.0963 1.6954 4.8333 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -0.2619 -2.1369 32 1 1.7516 -1.7716 -1.2054 33 1 3.9994 -1.0729 -0.4259 34 1 3.8532 0.4369 -1.3573 35 1 3.4256 -1.7346 -3.1113 36 1 5.4412 -1.5884 -4.8941 37 1 5.5880 -3.0988 -3.9637 38 1 11.3089 -0.0620 -5.2218 39 1 10.2940 1.8335 -6.3920 40 1 7.8473 2.0405 -6.5239 41 1 6.3966 0.3801 -5.5045 42 1 2.2489 -1.6318 1.1528 43 1 3.2469 -2.3962 4.2425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714500916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:40 Heat of formation + Delta-G solvation = 16.441334 kcal Electronic energy + Delta-G solvation = -24968.087791 eV Core-core repulsion = 21332.411356 eV Total energy + Delta-G solvation = -3635.676435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.46792 -39.33924 -37.06817 -36.45826 -34.36576 -32.31347 -31.71796 -30.81487 -30.57680 -29.00512 -27.90893 -24.17831 -23.71671 -23.23187 -22.58645 -21.09273 -20.21645 -19.52809 -18.79557 -17.35393 -16.97181 -16.69848 -16.09263 -15.62466 -15.46845 -15.17874 -14.87873 -14.57072 -14.30106 -13.97772 -13.74051 -13.50019 -13.41514 -13.17686 -12.53200 -12.49002 -12.29233 -12.12703 -12.03754 -11.92657 -11.54311 -11.07223 -11.03375 -10.91194 -10.75305 -10.70314 -10.61592 -10.29678 -10.15865 -9.99665 -9.71234 -9.61398 -9.25462 -8.91854 -8.82561 -8.10645 -6.93167 -5.72688 -3.01492 0.24001 0.85890 1.20179 1.58271 1.82969 2.69233 3.20250 3.41203 3.46852 3.52145 3.54063 3.97672 4.17350 4.53318 4.60185 4.63004 4.83289 4.85704 4.93018 4.96055 5.13816 5.27877 5.31516 5.39524 5.51229 5.57696 5.68013 5.72195 5.85277 5.88116 6.03601 6.06509 6.17589 6.32480 6.34246 6.39840 6.44801 6.47034 6.65825 6.70889 6.86830 7.06601 7.57835 7.73956 8.30545 8.45567 9.56941 10.13468 10.47837 11.49936 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002415 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.671349 B =11589.568498 C =12301.904383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.122 3.878 6 N -0.726 5.726 7 C 0.514 3.486 8 O -0.525 6.525 9 C -0.080 4.080 10 C 0.179 3.821 11 N -0.426 5.426 12 S 0.190 5.810 13 C -0.135 4.135 14 C -0.081 4.081 15 C -0.084 4.084 16 C -0.124 4.124 17 C -0.048 4.048 18 C -0.119 4.119 19 N -0.724 5.724 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.035 0.965 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.383 0.617 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.950 2.799 -26.416 28.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.170 4.170 5 C 0.000 4.000 6 N -0.378 5.378 7 C 0.297 3.703 8 O -0.400 6.400 9 C -0.125 4.125 10 C -0.011 4.011 11 N -0.237 5.237 12 S 0.346 5.654 13 C -0.256 4.256 14 C -0.104 4.104 15 C -0.107 4.107 16 C -0.145 4.145 17 C -0.070 4.070 18 C -0.131 4.131 19 N -0.366 5.366 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.217 0.783 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.636 1.465 -24.561 26.805 hybrid contribution -1.094 1.183 0.021 1.611 sum 9.542 2.648 -24.539 26.462 Atomic orbital electron populations 1.22425 0.99143 1.00833 0.99953 1.20152 0.91873 0.95570 0.86050 0.93326 1.22058 0.93805 1.01842 0.99345 1.21474 0.94432 0.97122 0.87002 1.46047 1.06768 1.57250 1.27717 1.20084 0.82792 0.80830 0.86584 1.90793 1.55124 1.44994 1.49126 1.20510 0.88476 1.04506 0.99038 1.21797 0.96334 0.89735 0.93234 1.75716 1.00609 1.26415 1.20984 1.84837 1.09390 1.16843 1.54356 1.23522 0.96696 1.01735 1.03605 1.19992 0.99352 0.93050 0.98021 1.21051 0.95226 0.97011 0.97364 1.20764 0.93678 0.99374 1.00637 1.20672 1.00289 0.91557 0.94504 1.20094 0.91832 0.97824 1.03355 1.42454 1.78092 1.10656 1.05351 1.19208 1.36571 0.93821 0.87328 0.91231 1.24731 1.02137 0.95968 0.98062 1.69656 1.50886 1.08682 1.28824 0.86220 0.77217 0.78883 0.84064 1.21825 1.21815 1.20759 0.94579 0.93522 0.92733 0.91895 0.91562 0.89690 0.91789 0.76927 0.86546 0.86285 0.84903 0.84739 0.84959 0.85090 0.78290 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 9.49 37.15 0.35 -2.45 16 2 C 0.17 3.29 2.89 -67.93 -0.20 3.09 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.94 4.87 -26.73 -0.13 -2.07 16 5 C 0.12 1.98 5.56 -4.04 -0.02 1.96 16 6 N -0.73 -9.08 5.56 -60.30 -0.33 -9.41 16 7 C 0.51 7.33 7.82 -10.99 -0.09 7.24 16 8 O -0.52 -10.39 16.03 5.55 0.09 -10.30 16 9 C -0.08 -0.81 5.97 -29.04 -0.17 -0.98 16 10 C 0.18 2.34 5.37 -81.23 -0.44 1.90 16 11 N -0.43 -6.37 11.84 34.00 0.40 -5.96 16 12 S 0.19 2.44 23.86 -107.50 -2.56 -0.12 16 13 C -0.14 -1.58 6.71 -38.41 -0.26 -1.84 16 14 C -0.08 -0.72 10.02 -39.93 -0.40 -1.12 16 15 C -0.08 -0.60 10.01 -39.86 -0.40 -1.00 16 16 C -0.12 -0.92 9.92 -40.10 -0.40 -1.32 16 17 C -0.05 -0.44 9.72 -39.25 -0.38 -0.82 16 18 C -0.12 -1.42 6.04 -105.14 -0.64 -2.06 16 19 N -0.72 -17.74 4.57 -53.43 -0.24 -17.99 16 20 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.62 13.06 55.49 0.72 -27.89 16 24 Si 0.90 22.89 29.55 -169.99 -5.02 17.87 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.78 7.75 -51.93 -0.40 1.37 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.40 3.38 8.47 -40.82 -0.35 3.04 16 36 H 0.12 0.68 7.54 -51.93 -0.39 0.29 16 37 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 40 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 41 H 0.13 0.89 7.64 -52.49 -0.40 0.49 16 42 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 43 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 380.21 15.07 5.73 5.73 Total: -1.00 -36.45 380.21 -10.68 -47.14 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -6.05 Total: 7.64 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.41 Total: -6.69 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.55 Total: -61.26 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.56 Total: -0.12 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.45 -10.68 -47.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714500916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.577 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds