Wall clock time and date at job start Tue Mar 31 2020 18:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47275 * 2 1 4 4 C 1.52996 * 109.47479 * 239.99456 * 2 1 3 5 5 C 1.53000 * 109.47455 * 175.00108 * 4 2 1 6 6 N 1.46500 * 109.47048 * 180.02562 * 5 4 2 7 7 C 1.34773 * 120.00260 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99645 * 359.97438 * 7 6 5 9 9 C 1.50695 * 120.00337 * 180.02562 * 7 6 5 10 10 C 1.50700 * 109.47480 * 179.97438 * 9 7 6 11 11 N 1.28736 * 121.08436 * 89.97164 * 10 9 7 12 12 S 1.69387 * 108.98436 * 180.02562 * 11 10 9 13 13 C 1.76506 * 96.12023 * 0.02562 * 12 11 10 14 14 C 1.38793 * 133.55703 * 180.02562 * 13 12 11 15 15 C 1.36714 * 119.75470 * 179.97438 * 14 13 12 16 16 C 1.38977 * 120.15465 * 359.97438 * 15 14 13 17 17 C 1.36037 * 121.15817 * 359.97438 * 16 15 14 18 18 C 1.40803 * 105.52227 * 0.22884 * 13 12 11 19 19 N 1.46511 * 109.47147 * 119.99499 * 2 1 3 20 20 C 1.36929 * 119.99889 * 275.00167 * 19 2 1 21 21 H 1.07998 * 120.00605 * 359.97438 * 20 19 2 22 22 C 1.38814 * 119.99901 * 179.97438 * 20 19 2 23 23 N 1.31623 * 119.99709 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00254 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47163 * 89.99839 * 24 22 20 26 26 H 1.48500 * 109.46885 * 209.99898 * 24 22 20 27 27 H 1.48505 * 109.46878 * 329.99910 * 24 22 20 28 28 H 1.08997 * 109.47456 * 60.00373 * 1 2 3 29 29 H 1.08996 * 109.47372 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47081 * 300.00495 * 1 2 3 31 31 H 1.09000 * 109.46768 * 54.99624 * 4 2 1 32 32 H 1.09007 * 109.47055 * 295.00533 * 4 2 1 33 33 H 1.08991 * 109.47158 * 60.00417 * 5 4 2 34 34 H 1.09000 * 109.46913 * 299.99718 * 5 4 2 35 35 H 0.97008 * 119.99804 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47369 * 60.00290 * 9 7 6 37 37 H 1.09005 * 109.47168 * 299.99743 * 9 7 6 38 38 H 1.07996 * 120.11863 * 359.97438 * 14 13 12 39 39 H 1.07996 * 119.92210 * 180.02562 * 15 14 13 40 40 H 1.08004 * 119.41792 * 180.02562 * 16 15 14 41 41 H 1.08002 * 119.89191 * 180.02562 * 17 16 15 42 42 H 0.97003 * 119.99440 * 94.99562 * 19 2 1 43 43 H 0.97001 * 119.99505 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 7 4.0531 -1.3036 -2.5100 7 6 5.3739 -1.3389 -2.7758 8 8 6.1582 -0.7989 -2.0247 9 6 5.8761 -2.0484 -4.0067 10 6 7.3779 -1.9412 -4.0709 11 7 8.1317 -2.8290 -3.5223 12 16 9.7528 -2.4096 -3.7780 13 6 9.4240 -0.9332 -4.6877 14 6 10.2341 0.0268 -5.2781 15 6 9.6663 1.0852 -5.9312 16 6 8.2832 1.1998 -6.0046 17 6 7.4688 0.2710 -5.4347 18 6 8.0209 -0.8313 -4.7463 19 7 2.0183 -0.6906 1.1963 20 6 2.1490 -0.0073 2.3758 21 1 1.8926 1.0406 2.4242 22 6 2.6112 -0.6618 3.5094 23 7 2.9243 -1.9388 3.4503 24 14 2.7903 0.2704 5.1183 25 1 1.5226 0.1803 5.8863 26 1 3.8945 -0.3235 5.9141 27 1 3.0963 1.6954 4.8333 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6053 -0.2619 -2.1369 32 1 1.7516 -1.7716 -1.2054 33 1 3.9994 -1.0729 -0.4259 34 1 3.8532 0.4369 -1.3573 35 1 3.4256 -1.7346 -3.1113 36 1 5.4412 -1.5884 -4.8941 37 1 5.5880 -3.0988 -3.9637 38 1 11.3089 -0.0620 -5.2218 39 1 10.2940 1.8335 -6.3920 40 1 7.8473 2.0405 -6.5239 41 1 6.3966 0.3801 -5.5045 42 1 2.2489 -1.6318 1.1528 43 1 3.2469 -2.3962 4.2425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714500916.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:39 Heat of formation + Delta-G solvation = -9.249456 kcal Electronic energy + Delta-G solvation = -24969.201827 eV Core-core repulsion = 21332.411356 eV Total energy + Delta-G solvation = -3636.790471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36468 -40.35054 -38.22413 -37.66935 -35.82652 -34.16433 -32.51617 -31.69834 -31.46127 -30.66899 -29.24657 -25.89268 -24.86156 -24.07774 -23.66632 -22.18589 -21.48612 -20.73728 -19.57360 -19.28447 -18.17560 -17.43467 -17.16589 -16.93057 -16.47228 -16.25281 -16.00903 -15.72932 -15.52186 -15.34594 -14.98262 -14.67344 -14.54899 -14.41109 -14.10449 -13.55254 -13.34523 -13.23104 -13.08843 -12.89723 -12.82502 -12.62712 -12.60478 -12.28131 -12.21568 -12.11871 -11.79491 -11.64686 -11.62086 -11.58928 -11.09849 -10.94312 -10.77919 -10.10275 -9.97971 -8.98346 -8.96946 -7.93650 -5.19998 -0.53329 0.19102 0.35623 0.69880 1.00225 1.44089 1.46159 1.53871 1.58250 2.23513 2.56103 2.66087 3.17100 3.40890 3.43785 3.76104 3.93668 3.97101 4.03187 4.05605 4.20170 4.26331 4.29033 4.36506 4.40653 4.46346 4.64462 4.68769 4.80346 4.90961 4.92374 5.03398 5.05228 5.12898 5.24872 5.25693 5.41662 5.42266 5.45977 5.52896 5.53994 5.64030 5.83803 6.29635 6.55953 7.26672 7.35433 8.14811 8.34804 9.30024 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014140 B = 0.002415 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.671349 B =11589.568498 C =12301.904383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.042 0.958 4 C -0.114 4.114 5 C 0.134 3.866 6 N -0.706 5.706 7 C 0.512 3.488 8 O -0.588 6.588 9 C -0.071 4.071 10 C 0.175 3.825 11 N -0.472 5.472 12 S 0.150 5.850 13 C -0.150 4.150 14 C -0.095 4.095 15 C -0.072 4.072 16 C -0.121 4.121 17 C -0.055 4.055 18 C -0.148 4.148 19 N -0.736 5.736 20 C -0.230 4.230 21 H 0.075 0.925 22 C -0.081 4.081 23 N -0.971 5.971 24 Si 0.966 3.034 25 H -0.285 1.285 26 H -0.301 1.301 27 H -0.270 1.270 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.111 0.889 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.052 0.948 35 H 0.422 0.578 36 H 0.168 0.832 37 H 0.138 0.862 38 H 0.150 0.850 39 H 0.172 0.828 40 H 0.168 0.832 41 H 0.156 0.844 42 H 0.371 0.629 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.438 5.166 -29.840 31.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.054 3.946 3 H 0.060 0.940 4 C -0.153 4.153 5 C 0.009 3.991 6 N -0.359 5.359 7 C 0.298 3.702 8 O -0.468 6.468 9 C -0.116 4.116 10 C -0.015 4.015 11 N -0.283 5.283 12 S 0.305 5.695 13 C -0.270 4.270 14 C -0.118 4.118 15 C -0.094 4.094 16 C -0.141 4.141 17 C -0.077 4.077 18 C -0.159 4.159 19 N -0.377 5.377 20 C -0.363 4.363 21 H 0.093 0.907 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.795 3.205 25 H -0.212 1.212 26 H -0.228 1.228 27 H -0.195 1.195 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.129 0.871 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.260 0.740 36 H 0.185 0.815 37 H 0.156 0.844 38 H 0.168 0.832 39 H 0.189 0.811 40 H 0.186 0.814 41 H 0.173 0.827 42 H 0.203 0.797 43 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.055 3.850 -28.060 29.735 hybrid contribution -0.637 0.610 0.926 1.279 sum 8.418 4.459 -27.134 28.757 Atomic orbital electron populations 1.22259 0.97063 1.01034 1.00919 1.20492 0.93195 0.95218 0.85716 0.93961 1.21915 0.92263 1.02110 0.98988 1.21084 0.95420 0.96134 0.86429 1.45775 1.06938 1.56491 1.26712 1.20799 0.82541 0.79832 0.87035 1.90775 1.56721 1.47825 1.51482 1.20652 0.86870 1.05468 0.98563 1.22368 0.97558 0.89531 0.92085 1.75700 1.01329 1.28318 1.22957 1.84680 1.09568 1.19110 1.56123 1.23739 0.97402 1.01587 1.04284 1.20386 1.00271 0.93026 0.98137 1.21563 0.95867 0.96487 0.95529 1.21273 0.93744 0.99568 0.99472 1.21072 1.01962 0.90766 0.93932 1.20366 0.91976 0.98797 1.04732 1.42678 1.78371 1.10230 1.06387 1.19601 1.34135 0.94072 0.88445 0.90747 1.25503 1.03461 0.96880 1.01418 1.69814 1.53098 1.10242 1.29123 0.85241 0.76809 0.78097 0.80308 1.21227 1.22821 1.19525 0.90330 0.93684 0.95025 0.87056 0.91009 0.95295 0.92919 0.74036 0.81489 0.84430 0.83222 0.81079 0.81443 0.82679 0.79743 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 9.49 71.98 0.68 -4.18 16 2 C 0.16 5.90 2.89 44.99 0.13 6.03 16 3 H 0.04 1.60 8.08 -2.39 -0.02 1.58 16 4 C -0.11 -3.07 4.87 30.59 0.15 -2.92 16 5 C 0.13 4.28 5.56 86.38 0.48 4.76 16 6 N -0.71 -16.42 5.56 -463.08 -2.57 -18.99 16 7 C 0.51 14.26 7.82 87.66 0.69 14.95 16 8 O -0.59 -24.09 16.03 -3.04 -0.05 -24.13 16 9 C -0.07 -1.30 5.97 29.10 0.17 -1.13 16 10 C 0.17 4.56 5.37 44.74 0.24 4.80 16 11 N -0.47 -14.90 11.84 -46.33 -0.55 -15.45 16 12 S 0.15 4.17 23.86 -56.49 -1.35 2.82 16 13 C -0.15 -3.54 6.71 23.03 0.15 -3.39 16 14 C -0.10 -1.56 10.02 22.05 0.22 -1.34 16 15 C -0.07 -0.79 10.01 22.09 0.22 -0.57 16 16 C -0.12 -1.32 9.92 21.93 0.22 -1.10 16 17 C -0.06 -0.85 9.72 22.49 0.22 -0.63 16 18 C -0.15 -3.41 6.04 -20.20 -0.12 -3.53 16 19 N -0.74 -36.58 4.57 -322.94 -1.48 -38.06 16 20 C -0.23 -12.95 9.93 84.04 0.83 -12.12 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 22 C -0.08 -4.79 5.50 84.86 0.47 -4.33 16 23 N -0.97 -61.70 13.06 21.65 0.28 -61.41 16 24 Si 0.97 48.03 29.55 68.60 2.03 50.05 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.03 1.26 7.75 -2.39 -0.02 1.24 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.42 5.66 8.47 -92.70 -0.79 4.87 16 36 H 0.17 1.26 7.54 -2.39 -0.02 1.24 16 37 H 0.14 2.03 8.14 -2.38 -0.02 2.01 16 38 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.17 0.65 8.06 -2.91 -0.02 0.63 16 41 H 0.16 1.49 7.64 -2.91 -0.02 1.47 16 42 H 0.37 20.06 7.80 -92.71 -0.72 19.34 16 43 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -86.85 380.21 0.60 -86.24 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.47 Total: 23.61 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 4.75 Total: -4.69 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -4.32 Total: -133.90 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.05 Total: -24.13 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.05 kcal Atomic # 16 Polarization: 4.17 SS G_CDS: -1.35 Total: 2.82 kcal Total: -86.85 0.60 -86.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714500916.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.995 kcal (2) G-P(sol) polarization free energy of solvation -86.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds