Wall clock time and date at job start Tue Mar 31 2020 18:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47259 * 2 1 4 4 C 1.36942 * 120.00045 * 275.31636 * 3 2 1 5 5 H 1.07998 * 119.99662 * 37.57494 * 4 3 2 6 6 C 1.38806 * 119.99731 * 217.57375 * 4 3 2 7 7 N 1.31621 * 120.00414 * 21.42938 * 6 4 3 8 8 Si 1.86800 * 119.99942 * 201.42231 * 6 4 3 9 9 H 1.48499 * 109.47018 * 90.00606 * 8 6 4 10 10 H 1.48503 * 109.47066 * 210.00058 * 8 6 4 11 11 H 1.48491 * 109.47183 * 330.00381 * 8 6 4 12 12 C 1.46504 * 119.99996 * 95.30951 * 3 2 1 13 13 C 1.52999 * 109.47185 * 270.00192 * 12 3 2 14 14 N 1.46495 * 109.46886 * 179.97438 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27815 * 14 13 12 16 16 O 1.21619 * 119.99660 * 359.72089 * 15 14 13 17 17 C 1.47374 * 120.00122 * 179.73181 * 15 14 13 18 18 N 1.29690 * 121.83132 * 0.02562 * 17 15 14 19 19 S 1.55998 * 111.74428 * 180.02562 * 18 17 15 20 20 C 1.76259 * 97.56455 * 0.02562 * 19 18 17 21 21 C 1.38696 * 134.19364 * 180.02562 * 20 19 18 22 22 C 1.36796 * 119.63157 * 179.97438 * 21 20 19 23 23 C 1.38908 * 120.30828 * 0.02562 * 22 21 20 24 24 C 1.50698 * 119.48221 * 179.97438 * 23 22 21 25 25 C 1.36325 * 121.03439 * 0.02562 * 23 22 21 26 26 C 1.40415 * 119.96329 * 359.66084 * 25 23 22 27 27 H 1.09001 * 109.46893 * 299.99572 * 1 2 3 28 28 H 1.09000 * 109.47647 * 60.00045 * 1 2 3 29 29 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46893 * 240.00428 * 2 1 3 31 31 H 1.09001 * 109.47081 * 120.00463 * 2 1 3 32 32 H 0.96993 * 120.00508 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46603 * 150.00299 * 12 3 2 34 34 H 1.09000 * 109.46677 * 30.00674 * 12 3 2 35 35 H 1.08999 * 109.46874 * 60.00152 * 13 12 3 36 36 H 1.08995 * 109.47233 * 300.00362 * 13 12 3 37 37 H 0.97003 * 120.00242 * 0.02562 * 14 13 12 38 38 H 1.08000 * 120.18187 * 359.97239 * 21 20 19 39 39 H 1.07999 * 119.84840 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47246 * 90.00359 * 24 23 22 41 41 H 1.09001 * 109.47640 * 210.00498 * 24 23 22 42 42 H 1.09001 * 109.47498 * 330.00648 * 24 23 22 43 43 H 1.08003 * 120.02289 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4103 1.9278 -1.9626 6 6 3.2110 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6492 8 14 3.0991 4.2795 -2.6585 9 1 2.5374 5.5069 -2.0394 10 1 4.4547 4.5697 -3.1909 11 1 2.2164 3.8358 -3.7670 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 7 1.4974 3.3891 3.1002 15 6 0.5635 4.0714 3.7922 16 8 -0.5725 4.1509 3.3652 17 6 0.9189 4.7212 5.0663 18 7 2.1190 4.6597 5.5541 19 16 2.2326 5.4264 6.9079 20 6 0.5594 5.9716 7.0069 21 6 -0.1599 6.7232 7.9242 22 6 -1.4853 6.9766 7.6998 23 6 -2.1101 6.4848 6.5608 24 6 -3.5712 6.7747 6.3326 25 6 -1.4224 5.7430 5.6468 26 6 -0.0592 5.4719 5.8464 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0490 3.4027 -0.7836 33 1 3.1617 2.7641 1.0859 34 1 2.7256 1.2832 1.9721 35 1 0.3542 2.0068 2.0140 36 1 0.7903 3.4875 1.1278 37 1 2.4035 3.3260 3.4406 38 1 0.3238 7.1062 8.8106 39 1 -2.0489 7.5612 8.4120 40 1 -3.6739 7.7027 5.7700 41 1 -4.0203 5.9567 5.7692 42 1 -4.0763 6.8745 7.2933 43 1 -1.9246 5.3683 4.7671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714592551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:34 Heat of formation + Delta-G solvation = 31.596052 kcal Electronic energy + Delta-G solvation = -25510.162946 eV Core-core repulsion = 21875.143669 eV Total energy + Delta-G solvation = -3635.019277 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.67453 -39.02959 -37.19359 -36.28890 -34.15264 -32.82484 -31.88498 -31.04133 -29.72774 -27.88376 -27.26982 -25.80729 -24.18476 -23.22342 -21.94121 -21.23322 -20.42970 -19.96389 -18.61210 -17.58924 -16.52327 -16.48930 -15.61436 -15.54291 -15.23563 -15.00909 -14.61328 -14.40940 -14.07017 -13.89734 -13.73545 -13.60813 -13.40018 -12.65009 -12.52993 -12.38729 -12.26258 -12.10197 -11.99511 -11.86983 -11.52606 -11.30744 -11.12044 -10.89021 -10.77946 -10.65043 -10.50021 -10.09865 -9.91227 -9.88439 -9.87006 -9.62335 -9.18288 -8.63227 -8.48093 -8.00200 -6.63184 -5.83306 -3.42620 0.18831 0.84402 1.14680 1.51156 1.61902 3.13416 3.33359 3.39125 3.43699 3.45523 3.51385 4.11888 4.43425 4.48013 4.58339 4.85833 5.00574 5.06230 5.19887 5.28528 5.31759 5.36959 5.54443 5.68356 5.73682 5.80546 5.87013 5.98071 6.06106 6.15152 6.15752 6.30258 6.38190 6.40013 6.50292 6.57870 6.68302 6.80966 6.91496 6.99700 7.16386 7.54171 7.80549 7.84996 8.41293 8.48544 9.14270 9.76315 10.34336 11.16762 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.002849 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.980841 B = 9824.027980 C =10176.245940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.579 5.579 4 C -0.262 4.262 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.276 1.276 12 C 0.137 3.863 13 C 0.096 3.904 14 N -0.696 5.696 15 C 0.580 3.420 16 O -0.533 6.533 17 C 0.097 3.903 18 N -0.486 5.486 19 S 0.379 5.621 20 C -0.206 4.206 21 C -0.072 4.072 22 C -0.090 4.090 23 C -0.088 4.088 24 C -0.115 4.115 25 C -0.042 4.042 26 C -0.083 4.083 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.046 0.954 31 H 0.034 0.966 32 H 0.255 0.745 33 H 0.099 0.901 34 H 0.030 0.970 35 H 0.056 0.944 36 H 0.069 0.931 37 H 0.406 0.594 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.146 7.473 19.939 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.300 5.300 4 C -0.392 4.392 5 H 0.080 0.920 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.201 1.201 12 C 0.010 3.990 13 C -0.029 4.029 14 N -0.346 5.346 15 C 0.360 3.640 16 O -0.410 6.410 17 C -0.092 4.092 18 N -0.312 5.312 19 S 0.538 5.462 20 C -0.326 4.326 21 C -0.094 4.094 22 C -0.113 4.113 23 C -0.090 4.090 24 C -0.171 4.171 25 C -0.064 4.064 26 C -0.093 4.093 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.241 0.759 38 H 0.151 0.849 39 H 0.151 0.849 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -7.507 7.182 20.031 22.565 hybrid contribution -1.194 0.910 -1.056 1.836 sum -8.701 8.092 18.975 22.389 Atomic orbital electron populations 1.22391 0.99899 0.99095 1.01388 1.20884 0.91774 0.86953 0.98927 1.43614 1.76043 1.08280 1.02035 1.19031 1.04810 1.21344 0.93972 0.91993 1.25199 0.94154 1.01199 0.98142 1.69991 1.03152 1.37196 1.42482 0.86383 0.76950 0.82582 0.81451 1.21225 1.21692 1.20117 1.21059 0.94463 0.97044 0.86477 1.22598 1.01437 0.96653 0.82225 1.46038 1.13240 1.51460 1.23841 1.17174 0.85490 0.79269 0.82077 1.90756 1.19963 1.61421 1.68818 1.22098 0.87436 1.01328 0.98355 1.71468 1.24275 1.22054 1.13365 1.81356 1.05483 1.43529 1.15857 1.24275 1.02193 1.06096 1.00080 1.19882 0.93803 0.97737 0.97931 1.20937 0.94202 0.99013 0.97119 1.19654 0.97004 0.97778 0.94558 1.20835 0.90991 1.02711 1.02603 1.20724 0.90856 0.95539 0.99300 1.19590 0.95645 1.00255 0.93826 0.93682 0.93078 0.94442 0.93536 0.94724 0.93478 0.88317 0.95184 0.92556 0.91312 0.75911 0.84854 0.84888 0.90802 0.90979 0.91319 0.83351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 10.21 37.16 0.38 -2.75 16 2 C 0.14 2.97 6.44 -4.05 -0.03 2.94 16 3 N -0.58 -14.20 2.43 -173.24 -0.42 -14.63 16 4 C -0.26 -7.07 9.45 -15.06 -0.14 -7.21 16 5 H 0.06 1.68 7.92 -52.49 -0.42 1.27 16 6 C 0.01 0.37 4.95 -17.43 -0.09 0.29 16 7 N -0.89 -25.05 11.47 55.49 0.64 -24.42 16 8 Si 0.90 21.61 29.60 -169.99 -5.03 16.58 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.14 3.13 5.45 -4.04 -0.02 3.10 16 13 C 0.10 1.99 6.00 -4.05 -0.02 1.97 16 14 N -0.70 -12.87 5.55 -61.40 -0.34 -13.21 16 15 C 0.58 10.67 7.81 -12.54 -0.10 10.58 16 16 O -0.53 -10.81 15.01 5.26 0.08 -10.73 16 17 C 0.10 1.54 6.82 -81.99 -0.56 0.99 16 18 N -0.49 -7.19 10.49 28.25 0.30 -6.89 16 19 S 0.38 4.28 23.36 -107.50 -2.51 1.77 16 20 C -0.21 -2.41 6.73 -38.49 -0.26 -2.67 16 21 C -0.07 -0.64 10.03 -39.93 -0.40 -1.04 16 22 C -0.09 -0.74 9.63 -39.86 -0.38 -1.13 16 23 C -0.09 -0.87 5.84 -105.06 -0.61 -1.48 16 24 C -0.11 -0.82 9.98 36.00 0.36 -0.46 16 25 C -0.04 -0.54 9.17 -39.45 -0.36 -0.91 16 26 C -0.08 -1.17 6.10 -105.09 -0.64 -1.81 16 27 H 0.04 0.84 6.64 -51.93 -0.34 0.50 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 31 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 32 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.10 2.54 5.52 -51.93 -0.29 2.25 16 34 H 0.03 0.64 7.86 -51.93 -0.41 0.24 16 35 H 0.06 1.17 6.64 -51.93 -0.34 0.82 16 36 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 37 H 0.41 7.01 7.91 -40.82 -0.32 6.68 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.53 8.07 -51.93 -0.42 0.11 16 42 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 43 H 0.15 2.06 6.64 -52.48 -0.35 1.72 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -30.80 372.02 -10.37 -41.17 By element: Atomic # 1 Polarization: 10.14 SS G_CDS: -5.81 Total: 4.34 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.88 Total: 0.41 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.17 Total: -59.14 kcal Atomic # 8 Polarization: -10.81 SS G_CDS: 0.08 Total: -10.73 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -2.51 Total: 1.77 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.80 -10.37 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714592551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.770 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds