Wall clock time and date at job start Tue Mar 31 2020 18:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47259 * 2 1 4 4 C 1.36942 * 120.00045 * 275.31636 * 3 2 1 5 5 H 1.07998 * 119.99662 * 37.57494 * 4 3 2 6 6 C 1.38806 * 119.99731 * 217.57375 * 4 3 2 7 7 N 1.31621 * 120.00414 * 21.42938 * 6 4 3 8 8 Si 1.86800 * 119.99942 * 201.42231 * 6 4 3 9 9 H 1.48499 * 109.47018 * 90.00606 * 8 6 4 10 10 H 1.48503 * 109.47066 * 210.00058 * 8 6 4 11 11 H 1.48491 * 109.47183 * 330.00381 * 8 6 4 12 12 C 1.46504 * 119.99996 * 95.30951 * 3 2 1 13 13 C 1.52999 * 109.47185 * 270.00192 * 12 3 2 14 14 N 1.46495 * 109.46886 * 179.97438 * 13 12 3 15 15 C 1.34783 * 120.00066 * 180.27815 * 14 13 12 16 16 O 1.21619 * 119.99660 * 359.72089 * 15 14 13 17 17 C 1.47374 * 120.00122 * 179.73181 * 15 14 13 18 18 N 1.29690 * 121.83132 * 0.02562 * 17 15 14 19 19 S 1.55998 * 111.74428 * 180.02562 * 18 17 15 20 20 C 1.76259 * 97.56455 * 0.02562 * 19 18 17 21 21 C 1.38696 * 134.19364 * 180.02562 * 20 19 18 22 22 C 1.36796 * 119.63157 * 179.97438 * 21 20 19 23 23 C 1.38908 * 120.30828 * 0.02562 * 22 21 20 24 24 C 1.50698 * 119.48221 * 179.97438 * 23 22 21 25 25 C 1.36325 * 121.03439 * 0.02562 * 23 22 21 26 26 C 1.40415 * 119.96329 * 359.66084 * 25 23 22 27 27 H 1.09001 * 109.46893 * 299.99572 * 1 2 3 28 28 H 1.09000 * 109.47647 * 60.00045 * 1 2 3 29 29 H 1.09008 * 109.47219 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46893 * 240.00428 * 2 1 3 31 31 H 1.09001 * 109.47081 * 120.00463 * 2 1 3 32 32 H 0.96993 * 120.00508 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46603 * 150.00299 * 12 3 2 34 34 H 1.09000 * 109.46677 * 30.00674 * 12 3 2 35 35 H 1.08999 * 109.46874 * 60.00152 * 13 12 3 36 36 H 1.08995 * 109.47233 * 300.00362 * 13 12 3 37 37 H 0.97003 * 120.00242 * 0.02562 * 14 13 12 38 38 H 1.08000 * 120.18187 * 359.97239 * 21 20 19 39 39 H 1.07999 * 119.84840 * 179.97438 * 22 21 20 40 40 H 1.09002 * 109.47246 * 90.00359 * 24 23 22 41 41 H 1.09001 * 109.47640 * 210.00498 * 24 23 22 42 42 H 1.09001 * 109.47498 * 330.00648 * 24 23 22 43 43 H 1.08003 * 120.02289 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1430 2.0634 -1.1808 5 1 1.4103 1.9278 -1.9626 6 6 3.2110 2.9290 -1.3728 7 7 4.3026 2.7981 -0.6492 8 14 3.0991 4.2795 -2.6585 9 1 2.5374 5.5069 -2.0394 10 1 4.4547 4.5697 -3.1909 11 1 2.2164 3.8358 -3.7670 12 6 2.3732 2.0327 1.2633 13 6 1.1426 2.7382 1.8366 14 7 1.4974 3.3891 3.1002 15 6 0.5635 4.0714 3.7922 16 8 -0.5725 4.1509 3.3652 17 6 0.9189 4.7212 5.0663 18 7 2.1190 4.6597 5.5541 19 16 2.2326 5.4264 6.9079 20 6 0.5594 5.9716 7.0069 21 6 -0.1599 6.7232 7.9242 22 6 -1.4853 6.9766 7.6998 23 6 -2.1101 6.4848 6.5608 24 6 -3.5712 6.7747 6.3326 25 6 -1.4224 5.7430 5.6468 26 6 -0.0592 5.4719 5.8464 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 5.0490 3.4027 -0.7836 33 1 3.1617 2.7641 1.0859 34 1 2.7256 1.2832 1.9721 35 1 0.3542 2.0068 2.0140 36 1 0.7903 3.4875 1.1278 37 1 2.4035 3.3260 3.4406 38 1 0.3238 7.1062 8.8106 39 1 -2.0489 7.5612 8.4120 40 1 -3.6739 7.7027 5.7700 41 1 -4.0203 5.9567 5.7692 42 1 -4.0763 6.8745 7.2933 43 1 -1.9246 5.3683 4.7671 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714592551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:33 Heat of formation + Delta-G solvation = 13.417122 kcal Electronic energy + Delta-G solvation = -25510.951244 eV Core-core repulsion = 21875.143669 eV Total energy + Delta-G solvation = -3635.807574 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.74022 -40.25242 -38.31060 -38.03663 -35.75778 -33.86071 -33.58145 -31.91390 -31.40873 -29.60943 -28.00503 -27.20212 -25.94729 -24.22060 -23.30000 -22.36493 -22.16864 -21.37782 -19.61583 -18.92544 -18.32692 -17.48018 -17.11701 -16.79070 -16.65512 -16.34409 -15.97709 -15.56489 -15.41028 -15.37354 -15.05484 -14.68941 -14.50821 -14.26719 -14.12256 -13.81079 -13.26174 -13.16276 -13.05202 -13.02668 -12.82113 -12.67259 -12.61468 -12.44229 -12.38998 -12.31013 -12.05758 -11.76024 -11.73513 -11.53353 -11.10605 -10.79563 -10.58385 -10.18616 -9.98210 -8.89736 -8.63982 -7.88750 -5.52262 -0.82294 -0.00635 0.25927 0.53629 0.59694 1.41573 1.45731 1.52601 1.91349 1.98537 2.47413 2.56931 3.14622 3.19542 3.49772 3.74708 3.83203 3.92635 4.20136 4.25532 4.33729 4.34797 4.36202 4.44355 4.66706 4.70921 4.77473 4.80227 4.82555 4.85420 4.96591 5.06288 5.11326 5.14483 5.17662 5.26757 5.27289 5.28674 5.54884 5.54904 5.61529 5.69902 5.83442 6.36021 6.43956 6.96077 7.11586 7.78773 8.31655 9.07377 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014131 B = 0.002849 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.980841 B = 9824.027980 C =10176.245940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.596 5.596 4 C -0.270 4.270 5 H 0.056 0.944 6 C -0.031 4.031 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.291 1.291 10 H -0.289 1.289 11 H -0.268 1.268 12 C 0.146 3.854 13 C 0.119 3.881 14 N -0.696 5.696 15 C 0.578 3.422 16 O -0.561 6.561 17 C 0.066 3.934 18 N -0.511 5.511 19 S 0.445 5.555 20 C -0.218 4.218 21 C -0.064 4.064 22 C -0.081 4.081 23 C -0.079 4.079 24 C -0.115 4.115 25 C -0.077 4.077 26 C -0.107 4.107 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.253 0.747 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.412 0.588 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.096 0.904 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.101 8.843 22.853 26.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.318 5.318 4 C -0.400 4.400 5 H 0.073 0.927 6 C -0.229 4.229 7 N -0.555 5.555 8 Si 0.781 3.219 9 H -0.218 1.218 10 H -0.215 1.215 11 H -0.192 1.192 12 C 0.018 3.982 13 C -0.006 4.006 14 N -0.347 5.347 15 C 0.360 3.640 16 O -0.439 6.439 17 C -0.121 4.121 18 N -0.339 5.339 19 S 0.605 5.395 20 C -0.339 4.339 21 C -0.085 4.085 22 C -0.104 4.104 23 C -0.081 4.081 24 C -0.172 4.172 25 C -0.099 4.099 26 C -0.117 4.117 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.248 0.752 38 H 0.190 0.810 39 H 0.194 0.806 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.115 0.885 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.474 8.540 22.958 25.919 hybrid contribution -0.926 0.520 -1.786 2.078 sum -9.400 9.060 21.172 24.873 Atomic orbital electron populations 1.22214 0.97776 1.00949 1.00469 1.21028 0.93332 0.85278 0.99295 1.43851 1.76392 1.09698 1.01826 1.19195 1.04390 1.21745 0.94667 0.92662 1.25814 0.93997 1.02936 1.00136 1.70092 1.03597 1.37871 1.43952 0.85505 0.76849 0.79915 0.79655 1.21797 1.21525 1.19228 1.20885 0.94257 0.96691 0.86347 1.22080 1.00330 0.95590 0.82648 1.45893 1.13752 1.51863 1.23171 1.17577 0.84869 0.78623 0.82891 1.90723 1.20994 1.62312 1.69892 1.21731 0.88627 1.03687 0.98092 1.71154 1.24308 1.22994 1.15480 1.80955 1.04665 1.41026 1.12806 1.24547 1.02360 1.06971 1.00071 1.20442 0.94009 0.95962 0.98110 1.21438 0.94190 0.98024 0.96699 1.20031 0.98113 0.95859 0.94086 1.20921 0.89386 1.02714 1.04165 1.20693 0.90959 0.98183 1.00108 1.19660 0.96080 1.01128 0.94827 0.94068 0.94463 0.91144 0.94264 0.93185 0.93760 0.91060 0.93946 0.92457 0.94385 0.75231 0.80972 0.80606 0.89944 0.91836 0.88547 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 10.21 71.98 0.73 -4.92 16 2 C 0.14 5.72 6.44 86.38 0.56 6.27 16 3 N -0.60 -29.86 2.43 -702.01 -1.71 -31.57 16 4 C -0.27 -14.90 9.45 84.03 0.79 -14.10 16 5 H 0.06 3.07 7.92 -2.91 -0.02 3.05 16 6 C -0.03 -1.72 4.95 84.86 0.42 -1.30 16 7 N -0.91 -52.81 11.47 21.65 0.25 -52.56 16 8 Si 0.95 45.36 29.60 68.60 2.03 47.39 16 9 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 12 C 0.15 6.85 5.45 86.38 0.47 7.32 16 13 C 0.12 5.20 6.00 86.38 0.52 5.72 16 14 N -0.70 -27.13 5.55 -466.42 -2.59 -29.72 16 15 C 0.58 22.59 7.81 86.65 0.68 23.26 16 16 O -0.56 -24.36 15.01 -4.09 -0.06 -24.42 16 17 C 0.07 2.17 6.82 43.85 0.30 2.47 16 18 N -0.51 -15.23 10.49 -64.55 -0.68 -15.91 16 19 S 0.45 9.34 23.36 -56.49 -1.32 8.02 16 20 C -0.22 -4.70 6.73 22.98 0.15 -4.54 16 21 C -0.06 -0.88 10.03 22.04 0.22 -0.66 16 22 C -0.08 -0.99 9.63 22.09 0.21 -0.78 16 23 C -0.08 -1.41 5.84 -20.15 -0.12 -1.53 16 24 C -0.12 -1.40 9.98 71.24 0.71 -0.69 16 25 C -0.08 -2.04 9.17 22.35 0.21 -1.83 16 26 C -0.11 -3.07 6.10 -20.17 -0.12 -3.19 16 27 H 0.04 1.52 6.64 -2.39 -0.02 1.50 16 28 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 30 H 0.04 1.69 8.08 -2.39 -0.02 1.67 16 31 H 0.05 1.93 7.83 -2.39 -0.02 1.91 16 32 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.07 3.81 5.52 -2.39 -0.01 3.80 16 34 H 0.04 1.85 7.86 -2.39 -0.02 1.84 16 35 H 0.06 2.47 6.64 -2.39 -0.02 2.45 16 36 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.41 14.93 7.91 -92.71 -0.73 14.20 16 38 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 39 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 40 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.89 8.07 -2.39 -0.02 0.87 16 42 H 0.10 0.65 8.08 -2.39 -0.02 0.63 16 43 H 0.12 3.78 6.64 -2.91 -0.02 3.76 16 Total: -1.00 -69.96 372.02 1.97 -67.99 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.31 Total: 19.27 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 5.73 Total: 11.50 kcal Atomic # 7 Polarization: -125.03 SS G_CDS: -4.73 Total: -129.76 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.06 Total: -24.42 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.39 kcal Atomic # 16 Polarization: 9.34 SS G_CDS: -1.32 Total: 8.02 kcal Total: -69.96 1.97 -67.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714592551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.410 kcal (2) G-P(sol) polarization free energy of solvation -69.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds