Wall clock time and date at job start Tue Mar 31 2020 16:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28058 * 124.24288 * 2 1 4 4 C 1.34411 * 117.91812 * 179.97438 * 3 2 1 5 5 C 1.41243 * 129.48357 * 180.02562 * 4 3 2 6 6 C 1.35752 * 120.63203 * 180.02562 * 5 4 3 7 7 C 1.40191 * 120.61912 * 0.02562 * 6 5 4 8 8 C 1.47594 * 120.12828 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00270 * 147.74420 * 8 7 6 10 10 N 1.34774 * 119.99707 * 327.73833 * 8 7 6 11 11 C 1.46500 * 120.00246 * 4.32876 * 10 8 7 12 12 C 1.46497 * 120.00099 * 184.33025 * 10 8 7 13 13 H 1.08995 * 109.47109 * 0.02562 * 12 10 8 14 14 C 1.53006 * 109.47065 * 120.00047 * 12 10 8 15 15 C 1.52995 * 109.47490 * 239.99992 * 12 10 8 16 16 N 1.46506 * 109.47110 * 54.99709 * 15 12 10 17 17 C 1.36931 * 120.00369 * 180.02562 * 16 15 12 18 18 H 1.08008 * 119.99747 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00250 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99929 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00197 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46706 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47165 * 119.99504 * 21 19 17 24 24 H 1.48495 * 109.46888 * 239.99719 * 21 19 17 25 25 C 1.39177 * 119.74655 * 0.25360 * 7 6 5 26 26 C 1.38916 * 119.84746 * 359.44381 * 25 7 6 27 27 S 1.70641 * 124.23994 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47552 * 90.02472 * 1 2 3 29 29 H 1.09004 * 109.47247 * 210.02439 * 1 2 3 30 30 H 1.09002 * 109.47336 * 330.02135 * 1 2 3 31 31 H 1.07997 * 119.68268 * 359.97412 * 5 4 3 32 32 H 1.07998 * 119.68889 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46860 * 94.86859 * 11 10 8 34 34 H 1.08997 * 109.47574 * 214.86643 * 11 10 8 35 35 H 1.09007 * 109.47174 * 334.87378 * 11 10 8 36 36 H 1.09007 * 109.46944 * 180.02562 * 14 12 10 37 37 H 1.08995 * 109.46889 * 300.00006 * 14 12 10 38 38 H 1.08995 * 109.47123 * 60.00050 * 14 12 10 39 39 H 1.09002 * 109.47585 * 175.00013 * 15 12 10 40 40 H 1.09002 * 109.47288 * 295.00502 * 15 12 10 41 41 H 0.97001 * 119.99296 * 0.02562 * 16 15 12 42 42 H 0.97001 * 120.00231 * 180.02562 * 20 19 17 43 43 H 1.08007 * 120.07819 * 179.70446 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5762 1.8951 0.0011 6 6 5.8864 1.5397 0.0011 7 6 6.2597 0.1884 -0.0001 8 6 7.6874 -0.1858 -0.0007 9 8 8.0499 -1.2018 0.5604 10 7 8.5893 0.5987 -0.6233 11 6 8.1682 1.8699 -1.2174 12 6 9.9908 0.1803 -0.7059 13 1 10.1119 -0.7839 -0.2122 14 6 10.4000 0.0553 -2.1750 15 6 10.8754 1.2213 -0.0170 16 7 10.4075 1.4281 1.3558 17 6 11.0496 2.3217 2.1708 18 1 11.9008 2.8744 1.8013 19 6 10.6066 2.5172 3.4716 20 7 9.5690 1.8440 3.9217 21 14 11.4821 3.7369 4.5832 22 1 12.6093 4.3596 3.8437 23 1 10.5274 4.7909 5.0105 24 1 12.0059 3.0291 5.7789 25 6 5.2789 -0.7990 -0.0066 26 6 3.9368 -0.4403 -0.0002 27 16 2.4671 -1.4107 0.0006 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.3057 2.9406 0.0008 32 1 6.6483 2.3052 0.0020 33 1 8.3405 2.6779 -0.5064 34 1 8.7434 2.0553 -2.1245 35 1 7.1073 1.8223 -1.4633 36 1 11.4427 -0.2565 -2.2365 37 1 9.7698 -0.6863 -2.6657 38 1 10.2788 1.0192 -2.6691 39 1 11.9065 0.8680 -0.0001 40 1 10.8227 2.1624 -0.5644 41 1 9.6428 0.9319 1.6874 42 1 9.2591 1.9809 4.8306 43 1 5.5604 -1.8417 -0.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714820898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:28 Heat of formation + Delta-G solvation = 56.141775 kcal Electronic energy + Delta-G solvation = -26115.600517 eV Core-core repulsion = 22481.645622 eV Total energy + Delta-G solvation = -3633.954894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -40.81605 -39.64951 -37.06281 -36.30778 -34.07387 -32.49756 -31.44080 -31.20920 -30.07946 -28.41351 -26.95768 -25.63219 -24.30304 -23.57570 -22.50803 -21.39598 -20.81853 -19.28523 -18.36194 -17.52031 -17.06010 -16.34605 -15.70326 -15.63144 -15.32334 -14.92770 -14.75491 -14.19894 -14.06504 -13.70820 -13.61061 -13.44175 -13.31104 -13.12604 -12.94441 -12.61961 -12.51215 -12.34674 -12.26962 -11.94421 -11.82282 -11.44988 -11.31781 -10.88343 -10.83328 -10.76575 -10.44781 -10.25685 -10.00418 -9.85114 -9.68384 -9.59311 -8.86131 -8.68975 -8.36906 -8.17851 -6.88173 -5.70925 -3.00887 0.07051 1.01496 1.06134 1.50578 1.94751 3.05812 3.22622 3.44805 3.50012 3.52781 3.63482 3.69378 4.43592 4.56492 4.63116 4.73087 4.96117 5.02638 5.07285 5.15210 5.16771 5.29257 5.38408 5.40725 5.52844 5.55709 5.61711 5.68814 5.70487 5.90235 5.92165 6.01797 6.05923 6.11435 6.18509 6.20650 6.36715 6.44675 6.51365 6.72681 6.96054 7.41630 7.65351 7.72612 8.44527 8.46251 9.57749 10.16402 10.51744 11.50854 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003236 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.330742 B = 8651.562067 C = 9833.987245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.089 3.911 3 N -0.470 5.470 4 C 0.100 3.900 5 C -0.073 4.073 6 C -0.082 4.082 7 C -0.100 4.100 8 C 0.562 3.438 9 O -0.529 6.529 10 N -0.588 5.588 11 C 0.060 3.940 12 C 0.126 3.874 13 H 0.101 0.899 14 C -0.156 4.156 15 C 0.144 3.856 16 N -0.728 5.728 17 C -0.241 4.241 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.927 5.927 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.014 4.014 26 C -0.192 4.192 27 S 0.102 5.898 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.160 0.840 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.028 0.972 40 H 0.021 0.979 41 H 0.387 0.613 42 H 0.254 0.746 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.899 -3.979 -15.006 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.195 4.195 3 N -0.184 5.184 4 C -0.020 4.020 5 C -0.094 4.094 6 C -0.103 4.103 7 C -0.107 4.107 8 C 0.350 3.650 9 O -0.406 6.406 10 N -0.320 5.320 11 C -0.083 4.083 12 C 0.023 3.977 13 H 0.119 0.881 14 C -0.214 4.214 15 C 0.015 3.985 16 N -0.373 5.373 17 C -0.372 4.372 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.575 5.575 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.038 4.038 26 C -0.311 4.311 27 S 0.358 5.642 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.158 0.842 32 H 0.177 0.823 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.039 0.961 41 H 0.221 0.779 42 H 0.064 0.936 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.142 -4.945 -14.653 22.354 hybrid contribution 0.881 1.361 0.933 1.871 sum -15.261 -3.583 -13.720 20.832 Atomic orbital electron populations 1.20565 0.84814 1.04624 1.04230 1.26792 1.01819 0.90981 0.99889 1.66133 1.04248 1.31292 1.16767 1.19299 0.89010 0.91748 1.01991 1.20312 0.90113 0.98645 1.00317 1.21553 0.96621 0.96134 0.96016 1.19878 0.93494 0.93742 1.03594 1.17983 0.84911 0.83467 0.78612 1.90805 1.80292 1.26265 1.43238 1.47499 1.08448 1.20582 1.55449 1.22416 1.00859 0.86181 0.98810 1.21436 0.79606 1.00722 0.95943 0.88053 1.22068 1.01777 1.01872 0.95711 1.21000 0.95086 0.94847 0.87520 1.42325 1.37248 1.49902 1.07851 1.19235 1.09725 1.15134 0.93146 0.91256 1.24752 0.98443 1.00268 0.97407 1.69702 1.26769 1.44297 1.16734 0.86157 0.78665 0.80640 0.80951 1.20628 1.21935 1.21916 1.20306 0.88202 1.00035 0.95214 1.23648 0.98596 0.96656 1.12161 1.83895 0.95589 1.10400 1.74341 0.89156 0.89698 0.88928 0.84177 0.82257 0.90966 0.91298 0.89982 0.91247 0.92608 0.92259 0.95407 0.96131 0.77871 0.93606 0.84199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.44 36.01 0.38 -0.14 16 2 C 0.09 0.96 7.29 -13.85 -0.10 0.86 16 3 N -0.47 -6.35 10.56 -8.96 -0.09 -6.44 16 4 C 0.10 1.44 7.00 -84.88 -0.59 0.84 16 5 C -0.07 -0.98 10.03 -39.33 -0.39 -1.37 16 6 C -0.08 -1.17 7.33 -39.74 -0.29 -1.46 16 7 C -0.10 -1.60 5.46 -105.00 -0.57 -2.17 16 8 C 0.56 10.40 7.13 -12.44 -0.09 10.31 16 9 O -0.53 -11.68 16.10 5.29 0.09 -11.60 16 10 N -0.59 -9.68 2.24 -175.14 -0.39 -10.07 16 11 C 0.06 0.78 7.99 59.85 0.48 1.25 16 12 C 0.13 2.12 2.80 -67.93 -0.19 1.93 16 13 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 14 C -0.16 -1.93 9.16 37.16 0.34 -1.59 16 15 C 0.14 2.87 5.56 -4.04 -0.02 2.85 16 16 N -0.73 -18.77 5.43 -59.91 -0.33 -19.10 16 17 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 20 N -0.93 -28.84 13.06 55.49 0.72 -28.12 16 21 Si 0.90 22.71 29.55 -169.99 -5.02 17.69 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 C -0.01 -0.22 9.62 -38.98 -0.38 -0.59 16 26 C -0.19 -2.69 6.54 -38.61 -0.25 -2.94 16 27 S 0.10 1.10 23.11 -107.50 -2.48 -1.38 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 32 H 0.16 2.13 4.82 -52.49 -0.25 1.88 16 33 H 0.07 1.05 7.45 -51.93 -0.39 0.66 16 34 H 0.07 0.74 6.45 -51.93 -0.33 0.41 16 35 H 0.08 0.91 4.70 -51.92 -0.24 0.66 16 36 H 0.07 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.66 6.69 -51.93 -0.35 0.31 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.02 0.40 7.84 -51.93 -0.41 -0.01 16 41 H 0.39 10.89 7.06 -40.82 -0.29 10.61 16 42 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.14 1.99 7.96 -52.48 -0.42 1.57 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -35.55 366.12 -9.47 -45.02 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.54 Total: 8.12 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -1.93 Total: 0.37 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -0.09 Total: -63.73 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Atomic # 16 Polarization: 1.10 SS G_CDS: -2.48 Total: -1.38 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.55 -9.47 -45.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714820898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.159 kcal (2) G-P(sol) polarization free energy of solvation -35.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds