Wall clock time and date at job start Tue Mar 31 2020 16:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.28058 * 124.24288 * 2 1 4 4 C 1.34411 * 117.91812 * 179.97438 * 3 2 1 5 5 C 1.41243 * 129.48357 * 180.02562 * 4 3 2 6 6 C 1.35752 * 120.63203 * 180.02562 * 5 4 3 7 7 C 1.40191 * 120.61912 * 0.02562 * 6 5 4 8 8 C 1.47594 * 120.12828 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00270 * 147.74420 * 8 7 6 10 10 N 1.34774 * 119.99707 * 327.73833 * 8 7 6 11 11 C 1.46500 * 120.00246 * 4.32876 * 10 8 7 12 12 C 1.46497 * 120.00099 * 184.33025 * 10 8 7 13 13 H 1.08995 * 109.47109 * 0.02562 * 12 10 8 14 14 C 1.53006 * 109.47065 * 120.00047 * 12 10 8 15 15 C 1.52995 * 109.47490 * 239.99992 * 12 10 8 16 16 N 1.46506 * 109.47110 * 54.99709 * 15 12 10 17 17 C 1.36931 * 120.00369 * 180.02562 * 16 15 12 18 18 H 1.08008 * 119.99747 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00250 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99929 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00197 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46706 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47165 * 119.99504 * 21 19 17 24 24 H 1.48495 * 109.46888 * 239.99719 * 21 19 17 25 25 C 1.39177 * 119.74655 * 0.25360 * 7 6 5 26 26 C 1.38916 * 119.84746 * 359.44381 * 25 7 6 27 27 S 1.70641 * 124.23994 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47552 * 90.02472 * 1 2 3 29 29 H 1.09004 * 109.47247 * 210.02439 * 1 2 3 30 30 H 1.09002 * 109.47336 * 330.02135 * 1 2 3 31 31 H 1.07997 * 119.68268 * 359.97412 * 5 4 3 32 32 H 1.07998 * 119.68889 * 180.02562 * 6 5 4 33 33 H 1.09003 * 109.46860 * 94.86859 * 11 10 8 34 34 H 1.08997 * 109.47574 * 214.86643 * 11 10 8 35 35 H 1.09007 * 109.47174 * 334.87378 * 11 10 8 36 36 H 1.09007 * 109.46944 * 180.02562 * 14 12 10 37 37 H 1.08995 * 109.46889 * 300.00006 * 14 12 10 38 38 H 1.08995 * 109.47123 * 60.00050 * 14 12 10 39 39 H 1.09002 * 109.47585 * 175.00013 * 15 12 10 40 40 H 1.09002 * 109.47288 * 295.00502 * 15 12 10 41 41 H 0.97001 * 119.99296 * 0.02562 * 16 15 12 42 42 H 0.97001 * 120.00231 * 180.02562 * 20 19 17 43 43 H 1.08007 * 120.07819 * 179.70446 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2276 1.0586 0.0000 4 6 3.5635 0.9105 0.0005 5 6 4.5762 1.8951 0.0011 6 6 5.8864 1.5397 0.0011 7 6 6.2597 0.1884 -0.0001 8 6 7.6874 -0.1858 -0.0007 9 8 8.0499 -1.2018 0.5604 10 7 8.5893 0.5987 -0.6233 11 6 8.1682 1.8699 -1.2174 12 6 9.9908 0.1803 -0.7059 13 1 10.1119 -0.7839 -0.2122 14 6 10.4000 0.0553 -2.1750 15 6 10.8754 1.2213 -0.0170 16 7 10.4075 1.4281 1.3558 17 6 11.0496 2.3217 2.1708 18 1 11.9008 2.8744 1.8013 19 6 10.6066 2.5172 3.4716 20 7 9.5690 1.8440 3.9217 21 14 11.4821 3.7369 4.5832 22 1 12.6093 4.3596 3.8437 23 1 10.5274 4.7909 5.0105 24 1 12.0059 3.0291 5.7789 25 6 5.2789 -0.7990 -0.0066 26 6 3.9368 -0.4403 -0.0002 27 16 2.4671 -1.4107 0.0006 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8898 0.5142 30 1 -0.3634 0.8902 0.5135 31 1 4.3057 2.9406 0.0008 32 1 6.6483 2.3052 0.0020 33 1 8.3405 2.6779 -0.5064 34 1 8.7434 2.0553 -2.1245 35 1 7.1073 1.8223 -1.4633 36 1 11.4427 -0.2565 -2.2365 37 1 9.7698 -0.6863 -2.6657 38 1 10.2788 1.0192 -2.6691 39 1 11.9065 0.8680 -0.0001 40 1 10.8227 2.1624 -0.5644 41 1 9.6428 0.9319 1.6874 42 1 9.2591 1.9809 4.8306 43 1 5.5604 -1.8417 -0.0124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714820898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:26 Heat of formation + Delta-G solvation = 32.674828 kcal Electronic energy + Delta-G solvation = -26116.618120 eV Core-core repulsion = 22481.645622 eV Total energy + Delta-G solvation = -3634.972498 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.95375 -40.85668 -38.22105 -37.73363 -35.89470 -33.89628 -32.58527 -32.39399 -31.66352 -29.36370 -28.12421 -27.38506 -25.31457 -24.82815 -24.27149 -22.51688 -21.95279 -20.59876 -19.42562 -19.09699 -18.69332 -17.66858 -16.92272 -16.78076 -16.59974 -16.28003 -16.10873 -15.57840 -15.28773 -15.17446 -15.07972 -14.52070 -14.40280 -14.20439 -14.00851 -13.82273 -13.74105 -13.67957 -13.30778 -13.16880 -12.98904 -12.84522 -12.75015 -12.51767 -12.30691 -12.09231 -11.94313 -11.78521 -11.69621 -11.27268 -11.05667 -10.91965 -10.76711 -9.77802 -9.62780 -9.22033 -8.99541 -7.92749 -5.23018 -0.95582 -0.03063 0.09210 0.56987 0.88744 1.45360 1.46986 1.56920 1.79928 1.95907 2.52520 2.55490 2.79638 3.34720 3.40218 3.45938 3.80144 3.87862 3.96822 4.06405 4.08867 4.19757 4.28365 4.37352 4.46480 4.56297 4.65168 4.66232 4.66671 4.78689 4.83152 4.85091 4.90995 4.93721 4.98164 5.09858 5.14302 5.16246 5.31839 5.42396 5.48923 5.62693 6.26219 6.33887 6.47514 7.07273 7.33128 8.09991 8.32828 9.30221 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.003236 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.330742 B = 8651.562067 C = 9833.987245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.099 3.901 3 N -0.500 5.500 4 C 0.094 3.906 5 C -0.075 4.075 6 C -0.082 4.082 7 C -0.123 4.123 8 C 0.554 3.446 9 O -0.581 6.581 10 N -0.586 5.586 11 C 0.057 3.943 12 C 0.128 3.872 13 H 0.069 0.931 14 C -0.143 4.143 15 C 0.142 3.858 16 N -0.743 5.743 17 C -0.240 4.240 18 H 0.080 0.920 19 C -0.078 4.078 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.262 1.262 23 H -0.293 1.293 24 H -0.299 1.299 25 C -0.016 4.016 26 C -0.219 4.219 27 S 0.142 5.858 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.161 0.839 32 H 0.165 0.835 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.031 0.969 40 H 0.041 0.959 41 H 0.371 0.629 42 H 0.248 0.752 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.065 -2.893 -16.768 24.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.184 4.184 3 N -0.215 5.215 4 C -0.027 4.027 5 C -0.095 4.095 6 C -0.103 4.103 7 C -0.130 4.130 8 C 0.344 3.656 9 O -0.462 6.462 10 N -0.316 5.316 11 C -0.084 4.084 12 C 0.025 3.975 13 H 0.087 0.913 14 C -0.201 4.201 15 C 0.015 3.985 16 N -0.386 5.386 17 C -0.372 4.372 18 H 0.098 0.902 19 C -0.270 4.270 20 N -0.620 5.620 21 Si 0.803 3.197 22 H -0.186 1.186 23 H -0.220 1.220 24 H -0.226 1.226 25 C -0.039 4.039 26 C -0.337 4.337 27 S 0.399 5.601 28 H 0.131 0.869 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.178 0.822 32 H 0.182 0.818 33 H 0.075 0.925 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.203 0.797 42 H 0.056 0.944 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.274 -3.829 -16.490 24.187 hybrid contribution 1.123 0.955 1.412 2.041 sum -16.151 -2.874 -15.079 22.282 Atomic orbital electron populations 1.20847 0.81460 1.06044 1.06051 1.27688 1.03654 0.90362 0.96734 1.66238 1.03759 1.32411 1.19126 1.19603 0.89870 0.91997 1.01256 1.20519 0.89619 0.99642 0.99769 1.21548 0.97205 0.95316 0.96188 1.19762 0.92210 0.94911 1.06108 1.18462 0.86229 0.83039 0.77908 1.90757 1.81293 1.28558 1.45608 1.47630 1.07999 1.21333 1.54626 1.22601 1.02779 0.83854 0.99190 1.21362 0.79636 0.98059 0.98446 0.91311 1.21985 1.02650 1.03441 0.92029 1.21223 0.95629 0.96543 0.85138 1.42558 1.36730 1.49305 1.09981 1.19679 1.09371 1.14606 0.93507 0.90222 1.25600 0.99558 1.02656 0.99168 1.69894 1.28867 1.46573 1.16693 0.85063 0.77868 0.78156 0.78595 1.18631 1.22011 1.22631 1.20314 0.88788 0.99762 0.95057 1.23889 0.99320 0.97804 1.12724 1.83751 0.93421 1.09517 1.73428 0.86904 0.87325 0.88387 0.82179 0.81817 0.92545 0.88317 0.88050 0.89853 0.91795 0.90085 0.95074 0.94164 0.79725 0.94359 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.44 71.24 0.74 -0.03 16 2 C 0.10 1.91 7.29 88.66 0.65 2.55 16 3 N -0.50 -12.81 10.56 -182.20 -1.92 -14.74 16 4 C 0.09 2.65 7.00 39.95 0.28 2.93 16 5 C -0.07 -1.99 10.03 22.43 0.23 -1.76 16 6 C -0.08 -2.35 7.33 22.17 0.16 -2.19 16 7 C -0.12 -4.11 5.46 -20.11 -0.11 -4.22 16 8 C 0.55 21.59 7.13 86.71 0.62 22.21 16 9 O -0.58 -27.56 16.10 -4.00 -0.06 -27.63 16 10 N -0.59 -19.58 2.24 -826.28 -1.85 -21.43 16 11 C 0.06 1.43 7.99 127.77 1.02 2.45 16 12 C 0.13 4.35 2.80 44.99 0.13 4.48 16 13 H 0.07 2.79 6.91 -2.39 -0.02 2.78 16 14 C -0.14 -3.25 9.16 71.98 0.66 -2.59 16 15 C 0.14 5.59 5.56 86.38 0.48 6.07 16 16 N -0.74 -39.00 5.43 -343.44 -1.87 -40.86 16 17 C -0.24 -13.58 9.99 84.03 0.84 -12.75 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 20 N -0.97 -62.22 13.06 21.65 0.28 -61.94 16 21 Si 0.97 47.22 29.55 68.60 2.03 49.25 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 24 H -0.30 -14.69 7.11 99.48 0.71 -13.99 16 25 C -0.02 -0.50 9.62 22.66 0.22 -0.29 16 26 C -0.22 -6.12 6.54 22.90 0.15 -5.97 16 27 S 0.14 2.87 23.11 -56.49 -1.31 1.56 16 28 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.11 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.16 3.47 8.06 -2.91 -0.02 3.44 16 32 H 0.16 4.45 4.82 -2.91 -0.01 4.44 16 33 H 0.06 1.62 7.45 -2.39 -0.02 1.60 16 34 H 0.10 1.86 6.45 -2.39 -0.02 1.85 16 35 H 0.10 2.17 4.70 -2.38 -0.01 2.15 16 36 H 0.08 1.68 8.14 -2.38 -0.02 1.67 16 37 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.51 6.69 -2.39 -0.02 1.49 16 39 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.04 1.46 7.84 -2.39 -0.02 1.44 16 41 H 0.37 21.76 7.06 -92.71 -0.65 21.11 16 42 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 43 H 0.14 4.17 7.96 -2.91 -0.02 4.15 16 Total: -1.00 -80.07 366.12 2.22 -77.84 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.40 Total: 31.18 kcal Atomic # 6 Polarization: 0.24 SS G_CDS: 6.53 Total: 6.77 kcal Atomic # 7 Polarization: -133.61 SS G_CDS: -5.36 Total: -138.97 kcal Atomic # 8 Polarization: -27.56 SS G_CDS: -0.06 Total: -27.63 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.31 Total: 1.56 kcal Total: -80.07 2.22 -77.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714820898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.520 kcal (2) G-P(sol) polarization free energy of solvation -80.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds