Wall clock time and date at job start Tue Mar 31 2020 16:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28049 * 124.24125 * 2 1 4 4 C 1.34418 * 117.91254 * 180.02562 * 3 2 1 5 5 C 1.41252 * 129.47816 * 179.97438 * 4 3 2 6 6 C 1.35750 * 120.63368 * 180.02562 * 5 4 3 7 7 C 1.40199 * 120.61418 * 359.97438 * 6 5 4 8 8 C 1.47584 * 120.12377 * 180.02562 * 7 6 5 9 9 O 1.21591 * 120.00128 * 200.58613 * 8 7 6 10 10 N 1.34778 * 120.00295 * 20.57983 * 8 7 6 11 11 C 1.46504 * 119.99861 * 7.03280 * 10 8 7 12 12 C 1.46500 * 120.00369 * 187.02455 * 10 8 7 13 13 H 1.09004 * 109.46897 * 0.02562 * 12 10 8 14 14 C 1.52999 * 109.47470 * 240.00375 * 12 10 8 15 15 C 1.52996 * 109.47023 * 120.00257 * 12 10 8 16 16 N 1.46500 * 109.47258 * 305.00220 * 15 12 10 17 17 C 1.36942 * 120.00108 * 179.97438 * 16 15 12 18 18 H 1.07992 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99741 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99734 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00323 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47302 * 89.99998 * 21 19 17 23 23 H 1.48499 * 109.47082 * 209.99933 * 21 19 17 24 24 H 1.48506 * 109.47213 * 329.99892 * 21 19 17 25 25 C 1.39175 * 119.75014 * 0.27743 * 7 6 5 26 26 C 1.38916 * 119.84480 * 359.47153 * 25 7 6 27 27 S 1.70644 * 124.23814 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46907 * 269.99526 * 1 2 3 29 29 H 1.09000 * 109.47396 * 29.99293 * 1 2 3 30 30 H 1.09000 * 109.47636 * 149.99838 * 1 2 3 31 31 H 1.07996 * 119.68075 * 0.03570 * 5 4 3 32 32 H 1.07998 * 119.68985 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.46461 * 267.66546 * 11 10 8 34 34 H 1.08996 * 109.46949 * 27.66600 * 11 10 8 35 35 H 1.08995 * 109.47034 * 147.66758 * 11 10 8 36 36 H 1.09003 * 109.47071 * 60.00387 * 14 12 10 37 37 H 1.08999 * 109.47012 * 179.97438 * 14 12 10 38 38 H 1.08993 * 109.47451 * 300.00168 * 14 12 10 39 39 H 1.08997 * 109.47258 * 65.00260 * 15 12 10 40 40 H 1.09003 * 109.47172 * 185.00431 * 15 12 10 41 41 H 0.97005 * 120.00248 * 359.97438 * 16 15 12 42 42 H 0.96998 * 120.00030 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.07943 * 179.72998 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9104 -0.0005 5 6 4.5763 1.8950 -0.0011 6 6 5.8865 1.5397 -0.0021 7 6 6.2597 0.1883 -0.0021 8 6 7.6874 -0.1857 -0.0026 9 8 8.0255 -1.2935 -0.3728 10 7 8.6165 0.7005 0.4071 11 6 8.2022 1.9761 0.9968 12 6 10.0405 0.3883 0.2630 13 1 10.1525 -0.5957 -0.1923 14 6 10.7055 0.3919 1.6410 15 6 10.7057 1.4402 -0.6269 16 7 9.9930 1.5204 -1.9043 17 6 10.4105 2.4001 -2.8672 18 1 11.2652 3.0344 -2.6850 19 6 9.7348 2.4764 -4.0774 20 7 10.1363 3.3216 -5.0031 21 14 8.2559 1.3797 -4.3923 22 1 7.0214 2.0724 -3.9434 23 1 8.1580 1.0855 -5.8445 24 1 8.4123 0.1093 -3.6393 25 6 5.2789 -0.7991 -0.0068 26 6 3.9369 -0.4404 -0.0004 27 16 2.4671 -1.4107 -0.0006 28 1 -0.3633 -0.0001 1.0278 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 4.3057 2.9405 -0.0006 32 1 6.6483 2.3052 -0.0030 33 1 8.1397 2.7339 0.2159 34 1 7.2265 1.8586 1.4682 35 1 8.9324 2.2846 1.7450 36 1 10.2317 -0.3576 2.2750 37 1 11.7649 0.1591 1.5337 38 1 10.5935 1.3759 2.0960 39 1 10.6719 2.4100 -0.1305 40 1 11.7436 1.1601 -0.8069 41 1 9.2254 0.9504 -2.0682 42 1 9.6640 3.3752 -5.8486 43 1 5.5605 -1.8417 -0.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714820900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:38 Heat of formation + Delta-G solvation = 62.850543 kcal Electronic energy + Delta-G solvation = -26398.879735 eV Core-core repulsion = 22765.215755 eV Total energy + Delta-G solvation = -3633.663980 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 4.25 seconds Orbital eigenvalues (eV) -40.95887 -39.82515 -37.17807 -36.54705 -34.28965 -32.60866 -31.56305 -31.31248 -30.52621 -28.51080 -27.21612 -25.96060 -24.39350 -23.68217 -22.17595 -21.47182 -20.94275 -19.53733 -18.48535 -17.67822 -17.56801 -16.50346 -15.82895 -15.73537 -15.41475 -15.10068 -14.75873 -14.35619 -14.15899 -14.02149 -13.71728 -13.62145 -13.37842 -13.04477 -12.87981 -12.75909 -12.65815 -12.54440 -12.42496 -12.20081 -11.92672 -11.71549 -11.43504 -10.97933 -10.92298 -10.82673 -10.55651 -10.36961 -10.12498 -9.93363 -9.80033 -9.59828 -8.90899 -8.82826 -8.54223 -8.30805 -7.23790 -5.77771 -3.12758 -0.06079 0.92326 0.95694 1.41432 1.80040 2.90269 3.04093 3.38634 3.46771 3.49813 3.54729 3.60578 4.32970 4.42387 4.60444 4.63538 4.84777 4.92007 4.99065 5.01785 5.05235 5.12493 5.24557 5.29277 5.43366 5.46937 5.53554 5.54565 5.60521 5.70734 5.78455 5.82624 5.90210 5.94062 6.01029 6.07311 6.19972 6.31006 6.40230 6.58141 6.79082 7.32616 7.44772 7.98045 8.21749 8.41595 9.20854 9.93906 10.13636 11.40465 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012767 B = 0.003889 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.662804 B = 7198.727994 C = 8404.963565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.092 3.908 3 N -0.470 5.470 4 C 0.104 3.896 5 C -0.073 4.073 6 C -0.095 4.095 7 C -0.113 4.113 8 C 0.560 3.440 9 O -0.535 6.535 10 N -0.592 5.592 11 C 0.062 3.938 12 C 0.122 3.878 13 H 0.102 0.898 14 C -0.155 4.155 15 C 0.148 3.852 16 N -0.753 5.753 17 C -0.244 4.244 18 H 0.091 0.909 19 C 0.010 3.990 20 N -0.933 5.933 21 Si 0.871 3.129 22 H -0.283 1.283 23 H -0.289 1.289 24 H -0.274 1.274 25 C -0.009 4.009 26 C -0.196 4.196 27 S 0.105 5.895 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.031 0.969 40 H 0.039 0.961 41 H 0.362 0.638 42 H 0.259 0.741 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.081 -6.665 17.408 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.192 4.192 3 N -0.185 5.185 4 C -0.017 4.017 5 C -0.094 4.094 6 C -0.116 4.116 7 C -0.120 4.120 8 C 0.348 3.652 9 O -0.413 6.413 10 N -0.323 5.323 11 C -0.080 4.080 12 C 0.020 3.980 13 H 0.120 0.880 14 C -0.214 4.214 15 C 0.020 3.980 16 N -0.399 5.399 17 C -0.373 4.373 18 H 0.109 0.891 19 C -0.186 4.186 20 N -0.581 5.581 21 Si 0.701 3.299 22 H -0.209 1.209 23 H -0.215 1.215 24 H -0.200 1.200 25 C -0.032 4.032 26 C -0.315 4.315 27 S 0.361 5.639 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.104 0.896 31 H 0.160 0.840 32 H 0.185 0.815 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.195 0.805 42 H 0.069 0.931 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -16.317 -7.621 17.096 24.832 hybrid contribution -0.461 0.084 -0.529 0.707 sum -16.778 -7.537 16.567 24.754 Atomic orbital electron populations 1.20584 0.84690 1.04710 1.04325 1.26838 1.01902 0.90947 0.99485 1.66152 1.04171 1.31276 1.16883 1.19357 0.89094 0.91764 1.01461 1.20359 0.90113 0.98769 1.00115 1.21972 0.97105 0.96478 0.95997 1.19883 0.93363 0.93826 1.04920 1.18059 0.85040 0.84467 0.77619 1.90780 1.81690 1.20890 1.47957 1.47589 1.06335 1.17878 1.60546 1.22423 1.01146 0.85794 0.98673 1.21529 0.78573 1.01605 0.96341 0.87990 1.22048 1.01042 1.02100 0.96162 1.21003 0.95010 0.95484 0.86508 1.42666 1.35700 1.47507 1.13985 1.19033 1.11847 1.13213 0.93245 0.89128 1.24601 0.98878 0.98800 0.96348 1.69689 1.42386 1.39104 1.06879 0.86729 0.84146 0.81447 0.77566 1.20945 1.21549 1.20002 1.20370 0.88215 1.00244 0.94366 1.23677 0.98670 0.96740 1.12382 1.83919 0.95455 1.10337 1.74173 0.89048 0.88836 0.89635 0.84007 0.81530 0.90719 0.90196 0.90653 0.92464 0.91064 0.92097 0.95116 0.94364 0.80511 0.93054 0.83948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.44 36.01 0.38 -0.13 16 2 C 0.09 0.97 7.29 -13.85 -0.10 0.87 16 3 N -0.47 -6.27 10.56 -8.96 -0.09 -6.36 16 4 C 0.10 1.47 7.00 -84.87 -0.59 0.88 16 5 C -0.07 -0.96 10.03 -39.33 -0.39 -1.35 16 6 C -0.09 -1.29 7.53 -39.74 -0.30 -1.59 16 7 C -0.11 -1.74 5.55 -105.00 -0.58 -2.32 16 8 C 0.56 9.71 7.22 -12.45 -0.09 9.62 16 9 O -0.54 -10.91 15.87 5.29 0.08 -10.83 16 10 N -0.59 -9.07 2.24 -175.14 -0.39 -9.46 16 11 C 0.06 0.73 7.82 59.85 0.47 1.19 16 12 C 0.12 1.92 2.80 -67.93 -0.19 1.73 16 13 H 0.10 1.83 6.92 -51.93 -0.36 1.47 16 14 C -0.16 -1.79 9.17 37.16 0.34 -1.45 16 15 C 0.15 2.77 5.55 -4.04 -0.02 2.75 16 16 N -0.75 -18.10 5.24 -59.91 -0.31 -18.42 16 17 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -29.61 13.97 55.49 0.78 -28.83 16 21 Si 0.87 23.27 27.74 -169.99 -4.71 18.55 16 22 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 23 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 24 H -0.27 -7.32 6.52 56.52 0.37 -6.95 16 25 C -0.01 -0.13 9.61 -38.98 -0.37 -0.50 16 26 C -0.20 -2.70 6.54 -38.62 -0.25 -2.95 16 27 S 0.11 1.11 23.11 -107.50 -2.48 -1.37 16 28 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 32 H 0.17 2.07 4.00 -52.49 -0.21 1.86 16 33 H 0.07 0.96 6.90 -51.93 -0.36 0.60 16 34 H 0.08 0.79 5.39 -51.93 -0.28 0.51 16 35 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.62 6.67 -51.93 -0.35 0.27 16 39 H 0.03 0.55 7.84 -51.93 -0.41 0.14 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.36 8.99 4.93 -40.82 -0.20 8.79 16 42 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 43 H 0.14 1.98 7.77 -52.49 -0.41 1.57 16 LS Contribution 362.09 15.07 5.46 5.46 Total: -1.00 -36.17 362.09 -9.11 -45.28 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -5.45 Total: 6.13 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.97 Total: -0.14 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.03 Total: -63.07 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.71 Total: 18.55 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.48 Total: -1.37 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.17 -9.11 -45.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714820900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.126 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.25 seconds