Wall clock time and date at job start Tue Mar 31 2020 16:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.28049 * 124.24125 * 2 1 4 4 C 1.34418 * 117.91254 * 180.02562 * 3 2 1 5 5 C 1.41252 * 129.47816 * 179.97438 * 4 3 2 6 6 C 1.35750 * 120.63368 * 180.02562 * 5 4 3 7 7 C 1.40199 * 120.61418 * 359.97438 * 6 5 4 8 8 C 1.47584 * 120.12377 * 180.02562 * 7 6 5 9 9 O 1.21591 * 120.00128 * 200.58613 * 8 7 6 10 10 N 1.34778 * 120.00295 * 20.57983 * 8 7 6 11 11 C 1.46504 * 119.99861 * 7.03280 * 10 8 7 12 12 C 1.46500 * 120.00369 * 187.02455 * 10 8 7 13 13 H 1.09004 * 109.46897 * 0.02562 * 12 10 8 14 14 C 1.52999 * 109.47470 * 240.00375 * 12 10 8 15 15 C 1.52996 * 109.47023 * 120.00257 * 12 10 8 16 16 N 1.46500 * 109.47258 * 305.00220 * 15 12 10 17 17 C 1.36942 * 120.00108 * 179.97438 * 16 15 12 18 18 H 1.07992 * 119.99910 * 0.02562 * 17 16 15 19 19 C 1.38813 * 119.99741 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99734 * 180.02562 * 19 17 16 21 21 Si 1.86794 * 120.00323 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47302 * 89.99998 * 21 19 17 23 23 H 1.48499 * 109.47082 * 209.99933 * 21 19 17 24 24 H 1.48506 * 109.47213 * 329.99892 * 21 19 17 25 25 C 1.39175 * 119.75014 * 0.27743 * 7 6 5 26 26 C 1.38916 * 119.84480 * 359.47153 * 25 7 6 27 27 S 1.70644 * 124.23814 * 180.02562 * 2 1 3 28 28 H 1.09008 * 109.46907 * 269.99526 * 1 2 3 29 29 H 1.09000 * 109.47396 * 29.99293 * 1 2 3 30 30 H 1.09000 * 109.47636 * 149.99838 * 1 2 3 31 31 H 1.07996 * 119.68075 * 0.03570 * 5 4 3 32 32 H 1.07998 * 119.68985 * 179.97438 * 6 5 4 33 33 H 1.08997 * 109.46461 * 267.66546 * 11 10 8 34 34 H 1.08996 * 109.46949 * 27.66600 * 11 10 8 35 35 H 1.08995 * 109.47034 * 147.66758 * 11 10 8 36 36 H 1.09003 * 109.47071 * 60.00387 * 14 12 10 37 37 H 1.08999 * 109.47012 * 179.97438 * 14 12 10 38 38 H 1.08993 * 109.47451 * 300.00168 * 14 12 10 39 39 H 1.08997 * 109.47258 * 65.00260 * 15 12 10 40 40 H 1.09003 * 109.47172 * 185.00431 * 15 12 10 41 41 H 0.97005 * 120.00248 * 359.97438 * 16 15 12 42 42 H 0.96998 * 120.00030 * 180.02562 * 20 19 17 43 43 H 1.08001 * 120.07943 * 179.72998 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0586 0.0000 4 6 3.5635 0.9104 -0.0005 5 6 4.5763 1.8950 -0.0011 6 6 5.8865 1.5397 -0.0021 7 6 6.2597 0.1883 -0.0021 8 6 7.6874 -0.1857 -0.0026 9 8 8.0255 -1.2935 -0.3728 10 7 8.6165 0.7005 0.4071 11 6 8.2022 1.9761 0.9968 12 6 10.0405 0.3883 0.2630 13 1 10.1525 -0.5957 -0.1923 14 6 10.7055 0.3919 1.6410 15 6 10.7057 1.4402 -0.6269 16 7 9.9930 1.5204 -1.9043 17 6 10.4105 2.4001 -2.8672 18 1 11.2652 3.0344 -2.6850 19 6 9.7348 2.4764 -4.0774 20 7 10.1363 3.3216 -5.0031 21 14 8.2559 1.3797 -4.3923 22 1 7.0214 2.0724 -3.9434 23 1 8.1580 1.0855 -5.8445 24 1 8.4123 0.1093 -3.6393 25 6 5.2789 -0.7991 -0.0068 26 6 3.9369 -0.4404 -0.0004 27 16 2.4671 -1.4107 -0.0006 28 1 -0.3633 -0.0001 1.0278 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5138 31 1 4.3057 2.9405 -0.0006 32 1 6.6483 2.3052 -0.0030 33 1 8.1397 2.7339 0.2159 34 1 7.2265 1.8586 1.4682 35 1 8.9324 2.2846 1.7450 36 1 10.2317 -0.3576 2.2750 37 1 11.7649 0.1591 1.5337 38 1 10.5935 1.3759 2.0960 39 1 10.6719 2.4100 -0.1305 40 1 11.7436 1.1601 -0.8069 41 1 9.2254 0.9504 -2.0682 42 1 9.6640 3.3752 -5.8486 43 1 5.5605 -1.8417 -0.0111 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714820900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:56:32 Heat of formation + Delta-G solvation = 38.828998 kcal Electronic energy + Delta-G solvation = -26399.921387 eV Core-core repulsion = 22765.215755 eV Total energy + Delta-G solvation = -3634.705633 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -42.03539 -40.93898 -38.30376 -37.84664 -36.05020 -34.02423 -32.87570 -32.44293 -31.89745 -29.40882 -28.26467 -27.61155 -25.33694 -24.80636 -23.98896 -22.58259 -22.02184 -20.82779 -19.67744 -19.38930 -18.74928 -17.73277 -16.94727 -16.80362 -16.68076 -16.32922 -16.15577 -15.98942 -15.40813 -15.13240 -14.88884 -14.64488 -14.50654 -14.26893 -14.13228 -14.00030 -13.84997 -13.71906 -13.68031 -13.21766 -13.06597 -12.97743 -12.73862 -12.46512 -12.34882 -12.29928 -11.97455 -11.88628 -11.71552 -11.33653 -11.13623 -11.00771 -10.81414 -9.87123 -9.69105 -9.33255 -9.27853 -8.08945 -5.39004 -1.04163 -0.07653 0.04400 0.52005 0.79269 1.24514 1.29580 1.34532 1.74448 1.87603 2.38097 2.50408 2.75158 3.23678 3.26875 3.39985 3.58230 3.79856 3.91667 3.94393 4.00443 4.13654 4.21072 4.33897 4.35354 4.52514 4.61288 4.62065 4.62873 4.75504 4.78226 4.81845 4.88099 4.91143 4.95892 5.03544 5.10417 5.13444 5.30981 5.37719 5.54976 5.72871 6.16418 6.24592 6.42726 6.95766 7.02351 7.80193 7.96932 9.12785 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012767 B = 0.003889 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.662804 B = 7198.727994 C = 8404.963565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.100 3.900 3 N -0.501 5.501 4 C 0.095 3.905 5 C -0.078 4.078 6 C -0.094 4.094 7 C -0.135 4.135 8 C 0.552 3.448 9 O -0.579 6.579 10 N -0.590 5.590 11 C 0.055 3.945 12 C 0.127 3.873 13 H 0.075 0.925 14 C -0.144 4.144 15 C 0.144 3.856 16 N -0.758 5.758 17 C -0.221 4.221 18 H 0.071 0.929 19 C -0.048 4.048 20 N -0.976 5.976 21 Si 0.929 3.071 22 H -0.274 1.274 23 H -0.293 1.293 24 H -0.279 1.279 25 C -0.012 4.012 26 C -0.223 4.223 27 S 0.143 5.857 28 H 0.113 0.887 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.161 0.839 32 H 0.178 0.822 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.050 0.950 40 H 0.040 0.960 41 H 0.358 0.642 42 H 0.258 0.742 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.125 -6.817 19.411 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.183 4.183 3 N -0.217 5.217 4 C -0.026 4.026 5 C -0.099 4.099 6 C -0.114 4.114 7 C -0.141 4.141 8 C 0.342 3.658 9 O -0.461 6.461 10 N -0.321 5.321 11 C -0.086 4.086 12 C 0.024 3.976 13 H 0.093 0.907 14 C -0.202 4.202 15 C 0.017 3.983 16 N -0.403 5.403 17 C -0.352 4.352 18 H 0.088 0.912 19 C -0.240 4.240 20 N -0.627 5.627 21 Si 0.759 3.241 22 H -0.200 1.200 23 H -0.220 1.220 24 H -0.205 1.205 25 C -0.035 4.035 26 C -0.341 4.341 27 S 0.400 5.600 28 H 0.131 0.869 29 H 0.116 0.884 30 H 0.127 0.873 31 H 0.178 0.822 32 H 0.195 0.805 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.082 0.918 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.191 0.809 42 H 0.067 0.933 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -18.359 -7.771 19.165 27.654 hybrid contribution 0.118 0.102 -1.069 1.080 sum -18.240 -7.669 18.096 26.814 Atomic orbital electron populations 1.20859 0.81453 1.06071 1.06094 1.27704 1.03688 0.90369 0.96507 1.66253 1.03795 1.32420 1.19187 1.19680 0.89921 0.92104 1.00900 1.20593 0.89810 0.99682 0.99783 1.22057 0.97652 0.95867 0.95862 1.19827 0.92370 0.94871 1.07063 1.18444 0.86113 0.84207 0.77042 1.90741 1.82475 1.22713 1.50122 1.47723 1.05884 1.18701 1.59780 1.22660 1.03212 0.83783 0.98916 1.21426 0.79192 0.98968 0.98053 0.90695 1.21978 1.01265 1.03640 0.93301 1.21253 0.94781 0.97411 0.84827 1.42756 1.35938 1.46466 1.15122 1.19076 1.10166 1.12279 0.93726 0.91155 1.25170 1.01649 1.00549 0.96671 1.69814 1.44097 1.41315 1.07493 0.85799 0.81798 0.79678 0.76854 1.19994 1.21978 1.20479 1.20401 0.88775 1.00062 0.94310 1.23919 0.99423 0.97782 1.12977 1.83776 0.93432 1.09483 1.73311 0.86854 0.88381 0.87291 0.82175 0.80513 0.91638 0.88240 0.87905 0.91819 0.89842 0.89960 0.93241 0.94182 0.80944 0.93317 0.84270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.44 71.24 0.74 0.00 16 2 C 0.10 1.87 7.29 88.66 0.65 2.52 16 3 N -0.50 -12.52 10.56 -182.20 -1.92 -14.44 16 4 C 0.10 2.60 7.00 39.95 0.28 2.88 16 5 C -0.08 -1.97 10.03 22.43 0.23 -1.75 16 6 C -0.09 -2.48 7.53 22.17 0.17 -2.31 16 7 C -0.13 -4.14 5.55 -20.11 -0.11 -4.25 16 8 C 0.55 19.26 7.22 86.71 0.63 19.89 16 9 O -0.58 -24.29 15.87 -4.00 -0.06 -24.35 16 10 N -0.59 -17.51 2.24 -826.30 -1.85 -19.37 16 11 C 0.06 1.18 7.82 127.77 1.00 2.18 16 12 C 0.13 3.85 2.80 44.99 0.13 3.97 16 13 H 0.07 2.71 6.92 -2.38 -0.02 2.70 16 14 C -0.14 -2.94 9.17 71.98 0.66 -2.28 16 15 C 0.14 5.20 5.55 86.38 0.48 5.68 16 16 N -0.76 -36.17 5.24 -343.46 -1.80 -37.97 16 17 C -0.22 -12.63 10.47 84.03 0.88 -11.75 16 18 H 0.07 4.26 8.06 -2.91 -0.02 4.24 16 19 C -0.05 -2.90 5.50 84.86 0.47 -2.44 16 20 N -0.98 -62.97 13.97 21.65 0.30 -62.67 16 21 Si 0.93 48.96 27.74 68.60 1.90 50.86 16 22 H -0.27 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.29 -15.51 7.11 99.48 0.71 -14.81 16 24 H -0.28 -14.73 6.52 99.48 0.65 -14.08 16 25 C -0.01 -0.37 9.61 22.66 0.22 -0.15 16 26 C -0.22 -5.96 6.54 22.90 0.15 -5.81 16 27 S 0.14 2.77 23.11 -56.49 -1.31 1.46 16 28 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.18 4.17 4.00 -2.91 -0.01 4.15 16 33 H 0.07 1.56 6.90 -2.39 -0.02 1.55 16 34 H 0.10 1.76 5.39 -2.39 -0.01 1.75 16 35 H 0.10 1.62 6.43 -2.39 -0.02 1.61 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.08 1.35 6.67 -2.39 -0.02 1.33 16 39 H 0.05 1.65 7.84 -2.39 -0.02 1.63 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.36 17.74 4.93 -92.70 -0.46 17.28 16 42 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 43 H 0.14 4.01 7.77 -2.91 -0.02 3.98 16 Total: -1.00 -79.77 362.09 2.35 -77.42 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.54 Total: 22.66 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 6.55 Total: 6.40 kcal Atomic # 7 Polarization: -129.17 SS G_CDS: -5.27 Total: -134.45 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.06 Total: -24.35 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.90 Total: 50.86 kcal Atomic # 16 Polarization: 2.77 SS G_CDS: -1.31 Total: 1.46 kcal Total: -79.77 2.35 -77.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714820900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.248 kcal (2) G-P(sol) polarization free energy of solvation -79.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds