Wall clock time and date at job start Tue Mar 31 2020 17:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21614 * 120.00334 * 0.02562 * 7 6 5 9 9 C 1.47383 * 119.99773 * 180.02562 * 7 6 5 10 10 N 1.29688 * 121.83076 * 0.02562 * 9 7 6 11 11 S 1.56003 * 111.74423 * 180.02562 * 10 9 7 12 12 C 1.76257 * 97.56183 * 0.02562 * 11 10 9 13 13 C 1.38690 * 134.18671 * 180.02562 * 12 11 10 14 14 C 1.36807 * 119.62657 * 179.97438 * 13 12 11 15 15 C 1.38905 * 120.31044 * 0.02619 * 14 13 12 16 16 C 1.50696 * 119.48608 * 179.97438 * 15 14 13 17 17 C 1.36338 * 121.03320 * 359.97438 * 15 14 13 18 18 C 1.40415 * 119.95809 * 359.67254 * 17 15 14 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.36943 * 119.99752 * 274.72222 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.07997 * 120.19063 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.84513 * 180.02562 * 14 13 12 38 38 H 1.08994 * 109.47642 * 89.99355 * 16 15 14 39 39 H 1.09003 * 109.47321 * 210.00157 * 16 15 14 40 40 H 1.09004 * 109.46752 * 329.99449 * 16 15 14 41 41 H 1.07990 * 120.01795 * 180.02562 * 17 15 14 42 42 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 43 43 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1656 2.1458 -0.2596 9 6 5.8871 4.4436 0.0341 10 7 5.0876 5.4478 0.2192 11 16 5.8658 6.7966 0.3126 12 6 7.4888 6.1431 0.0989 13 6 8.7579 6.7011 0.0582 14 6 9.8461 5.8933 -0.1283 15 6 9.6839 4.5217 -0.2769 16 6 10.8955 3.6494 -0.4819 17 6 8.4456 3.9524 -0.2401 18 6 7.3104 4.7549 -0.0428 19 7 1.6525 2.0974 1.2518 20 6 0.4178 2.6784 1.3668 21 1 -0.2719 2.6498 0.5362 22 6 0.0527 3.3040 2.5509 23 7 0.8936 3.3393 3.5630 24 14 -1.6317 4.0959 2.7081 25 1 -2.6833 3.0667 2.5072 26 1 -1.7742 4.6923 4.0606 27 1 -1.7768 5.1589 1.6813 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 8.8864 7.7672 0.1730 37 1 10.8360 6.3239 -0.1602 38 1 11.2732 3.3188 0.4856 39 1 10.6208 2.7810 -1.0808 40 1 11.6688 4.2174 -0.9991 41 1 8.3385 2.8842 -0.3571 42 1 2.2720 2.1232 1.9978 43 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715069906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:10 Heat of formation + Delta-G solvation = 18.258768 kcal Electronic energy + Delta-G solvation = -25615.034702 eV Core-core repulsion = 21979.437077 eV Total energy + Delta-G solvation = -3635.597625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -40.61064 -39.07123 -37.20023 -36.59693 -33.75578 -32.76109 -32.34096 -30.94438 -29.76106 -28.26706 -27.22439 -25.83359 -23.77384 -23.11053 -22.33244 -21.28773 -20.23026 -19.72274 -18.51426 -17.62434 -17.03044 -16.43920 -15.60581 -15.50727 -15.33201 -15.07249 -14.58119 -14.27248 -14.04572 -13.96488 -13.63737 -13.60239 -13.17960 -12.96919 -12.61493 -12.49645 -12.19234 -12.15779 -11.94709 -11.79416 -11.44436 -11.17767 -10.95103 -10.86154 -10.78350 -10.73434 -10.44244 -10.19500 -10.03770 -9.82207 -9.71990 -9.51924 -9.10186 -8.93476 -8.71093 -7.91861 -7.01609 -5.78700 -3.08110 0.29710 0.91607 1.25977 1.58567 1.74346 3.17019 3.37917 3.42205 3.47002 3.47625 3.56804 4.19894 4.52240 4.56290 4.64021 4.92144 5.07202 5.12030 5.27561 5.37336 5.39610 5.39950 5.45897 5.56525 5.75761 5.77371 5.87065 5.92501 5.94470 5.95862 5.96450 6.11520 6.22659 6.35793 6.42676 6.53525 6.57707 6.60405 6.64636 6.85364 7.02301 7.25472 7.67883 7.87222 8.37965 8.42609 9.50052 10.04660 10.40372 11.43103 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.003164 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.277270 B = 8847.255616 C =10344.137173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.054 0.946 5 C 0.113 3.887 6 N -0.688 5.688 7 C 0.585 3.415 8 O -0.541 6.541 9 C 0.090 3.910 10 N -0.474 5.474 11 S 0.388 5.612 12 C -0.209 4.209 13 C -0.070 4.070 14 C -0.092 4.092 15 C -0.089 4.089 16 C -0.114 4.114 17 C -0.043 4.043 18 C -0.081 4.081 19 N -0.721 5.721 20 C -0.238 4.238 21 H 0.072 0.928 22 C -0.010 4.010 23 N -0.929 5.929 24 Si 0.903 3.097 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 H 0.032 0.968 29 H 0.085 0.915 30 H 0.040 0.960 31 H 0.043 0.957 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.420 0.580 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.067 0.933 41 H 0.148 0.852 42 H 0.385 0.615 43 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.124 4.670 -9.255 20.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.072 0.928 5 C -0.011 4.011 6 N -0.340 5.340 7 C 0.365 3.635 8 O -0.419 6.419 9 C -0.098 4.098 10 N -0.300 5.300 11 S 0.547 5.453 12 C -0.330 4.330 13 C -0.092 4.092 14 C -0.115 4.115 15 C -0.091 4.091 16 C -0.170 4.170 17 C -0.065 4.065 18 C -0.091 4.091 19 N -0.363 5.363 20 C -0.369 4.369 21 H 0.090 0.910 22 C -0.207 4.207 23 N -0.577 5.577 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.258 0.742 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.165 0.835 42 H 0.219 0.781 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 16.678 5.560 -9.057 19.776 hybrid contribution -0.034 -0.511 0.352 0.622 sum 16.644 5.049 -8.705 19.450 Atomic orbital electron populations 1.21767 0.95694 0.99630 1.03280 1.22064 0.97004 0.98259 1.00043 1.20569 0.89695 0.92963 0.91546 0.92800 1.21791 0.95945 0.81997 1.01407 1.45876 1.06556 1.11484 1.70039 1.17117 0.83074 0.85436 0.77842 1.90730 1.56168 1.44060 1.50919 1.21956 0.88876 0.94018 1.04944 1.71515 1.35857 1.04398 1.18206 1.81454 0.88343 1.09803 1.65706 1.24336 1.02114 0.97808 1.08727 1.19884 0.89070 0.99962 1.00269 1.20917 0.98650 0.93008 0.98927 1.19634 0.95068 0.94319 1.00099 1.20821 0.94766 0.99001 1.02449 1.20681 0.89164 1.00780 0.95924 1.19581 0.92499 0.92699 1.04365 1.42440 1.16968 1.65719 1.11197 1.19144 0.91996 1.27682 0.98061 0.90976 1.24730 0.98040 1.01452 0.96435 1.69656 1.35221 1.48719 1.04055 0.86336 0.84231 0.79272 0.76738 1.21283 1.21805 1.21304 0.94857 0.89650 0.94117 0.93801 0.92471 0.91392 0.91433 0.74230 0.84889 0.84978 0.90863 0.91085 0.91380 0.83478 0.78082 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.16 0.34 -2.29 16 2 C -0.13 -2.31 5.61 -26.73 -0.15 -2.46 16 3 C 0.16 3.08 2.59 -67.93 -0.18 2.91 16 4 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 5 C 0.11 1.97 5.23 -4.04 -0.02 1.94 16 6 N -0.69 -12.62 5.38 -61.40 -0.33 -12.95 16 7 C 0.58 10.67 7.81 -12.54 -0.10 10.57 16 8 O -0.54 -10.34 15.01 5.27 0.08 -10.26 16 9 C 0.09 1.53 6.82 -81.98 -0.56 0.97 16 10 N -0.47 -7.95 10.49 28.25 0.30 -7.65 16 11 S 0.39 5.06 23.36 -107.50 -2.51 2.55 16 12 C -0.21 -2.65 6.73 -38.49 -0.26 -2.91 16 13 C -0.07 -0.68 10.03 -39.93 -0.40 -1.08 16 14 C -0.09 -0.81 9.63 -39.85 -0.38 -1.19 16 15 C -0.09 -0.90 5.84 -105.06 -0.61 -1.52 16 16 C -0.11 -0.82 9.98 36.00 0.36 -0.46 16 17 C -0.04 -0.57 9.17 -39.45 -0.36 -0.93 16 18 C -0.08 -1.20 6.10 -105.09 -0.64 -1.84 16 19 N -0.72 -16.93 4.50 -53.43 -0.24 -17.17 16 20 C -0.24 -6.18 7.76 -15.06 -0.12 -6.30 16 21 H 0.07 1.83 7.33 -52.49 -0.38 1.44 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 24 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.08 1.82 6.01 -51.93 -0.31 1.51 16 30 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 35 H 0.42 8.24 7.58 -40.82 -0.31 7.94 16 36 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 40 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 41 H 0.15 2.01 6.64 -52.49 -0.35 1.66 16 42 H 0.39 9.93 7.80 -40.82 -0.32 9.62 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 371.66 15.07 5.60 5.60 Total: -1.00 -30.47 371.66 -10.45 -40.92 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -5.87 Total: 13.61 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -3.18 Total: -4.96 kcal Atomic # 7 Polarization: -64.87 SS G_CDS: 0.45 Total: -64.42 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.08 Total: -10.26 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -2.51 Total: 2.55 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.47 -10.45 -40.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715069906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.182 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds