Wall clock time and date at job start Tue Mar 31 2020 17:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 C 1.52999 * 109.47114 * 184.99769 * 3 2 1 6 6 N 1.46500 * 109.47226 * 184.99495 * 5 3 2 7 7 C 1.34776 * 119.99923 * 180.02562 * 6 5 3 8 8 O 1.21614 * 120.00334 * 0.02562 * 7 6 5 9 9 C 1.47383 * 119.99773 * 180.02562 * 7 6 5 10 10 N 1.29688 * 121.83076 * 0.02562 * 9 7 6 11 11 S 1.56003 * 111.74423 * 180.02562 * 10 9 7 12 12 C 1.76257 * 97.56183 * 0.02562 * 11 10 9 13 13 C 1.38690 * 134.18671 * 180.02562 * 12 11 10 14 14 C 1.36807 * 119.62657 * 179.97438 * 13 12 11 15 15 C 1.38905 * 120.31044 * 0.02619 * 14 13 12 16 16 C 1.50696 * 119.48608 * 179.97438 * 15 14 13 17 17 C 1.36338 * 121.03320 * 359.97438 * 15 14 13 18 18 C 1.40415 * 119.95809 * 359.67254 * 17 15 14 19 19 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 20 20 C 1.36943 * 119.99752 * 274.72222 * 19 3 2 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 3 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 3 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47213 * 60.00246 * 24 22 20 26 26 H 1.48502 * 109.47317 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47081 * 299.99875 * 24 22 20 28 28 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 30 30 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 1.08995 * 109.47415 * 304.99804 * 5 3 2 34 34 H 1.09008 * 109.47087 * 65.00143 * 5 3 2 35 35 H 0.96998 * 120.00120 * 0.02562 * 6 5 3 36 36 H 1.07997 * 120.19063 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.84513 * 180.02562 * 14 13 12 38 38 H 1.08994 * 109.47642 * 89.99355 * 16 15 14 39 39 H 1.09003 * 109.47321 * 210.00157 * 16 15 14 40 40 H 1.09004 * 109.46752 * 329.99449 * 16 15 14 41 41 H 1.07990 * 120.01795 * 180.02562 * 17 15 14 42 42 H 0.97001 * 120.00384 * 95.00578 * 19 3 2 43 43 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5649 1.4442 -0.1257 6 7 4.0632 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0869 8 8 6.1656 2.1458 -0.2596 9 6 5.8871 4.4436 0.0341 10 7 5.0876 5.4478 0.2192 11 16 5.8658 6.7966 0.3126 12 6 7.4888 6.1431 0.0989 13 6 8.7579 6.7011 0.0582 14 6 9.8461 5.8933 -0.1283 15 6 9.6839 4.5217 -0.2769 16 6 10.8955 3.6494 -0.4819 17 6 8.4456 3.9524 -0.2401 18 6 7.3104 4.7549 -0.0428 19 7 1.6525 2.0974 1.2518 20 6 0.4178 2.6784 1.3668 21 1 -0.2719 2.6498 0.5362 22 6 0.0527 3.3040 2.5509 23 7 0.8936 3.3393 3.5630 24 14 -1.6317 4.0959 2.7081 25 1 -2.6833 3.0667 2.5072 26 1 -1.7742 4.6923 4.0606 27 1 -1.7768 5.1589 1.6813 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.9955 0.8311 0.6660 34 1 3.8500 1.0376 -1.0960 35 1 3.4412 3.5482 0.1314 36 1 8.8864 7.7672 0.1730 37 1 10.8360 6.3239 -0.1602 38 1 11.2732 3.3188 0.4856 39 1 10.6208 2.7810 -1.0808 40 1 11.6688 4.2174 -0.9991 41 1 8.3385 2.8842 -0.3571 42 1 2.2720 2.1232 1.9978 43 1 0.6383 3.7761 4.3906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715069906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:07 Heat of formation + Delta-G solvation = -0.844295 kcal Electronic energy + Delta-G solvation = -25615.863073 eV Core-core repulsion = 21979.437077 eV Total energy + Delta-G solvation = -3636.425996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -41.71634 -40.27670 -38.42995 -38.05237 -35.33323 -34.17647 -33.53940 -31.86269 -31.52605 -29.84187 -27.97344 -27.15248 -25.50209 -24.34346 -23.53958 -22.27747 -21.70801 -21.13166 -19.58869 -19.27279 -18.53526 -17.49121 -17.08507 -16.71671 -16.58021 -16.34079 -15.93141 -15.60230 -15.30649 -15.18887 -14.90128 -14.73837 -14.50952 -14.41060 -14.14272 -13.76818 -13.13549 -13.01669 -13.00119 -12.84103 -12.78331 -12.76000 -12.58540 -12.40724 -12.32448 -12.16400 -11.90593 -11.72984 -11.66469 -11.35221 -11.09322 -10.88087 -10.77532 -10.15882 -9.96413 -9.00166 -8.89786 -7.89429 -5.16932 -0.77240 0.01813 0.28364 0.56058 0.64391 1.47418 1.48774 1.54299 1.94022 2.07531 2.57600 2.59239 3.18844 3.43789 3.57134 3.83017 3.87550 3.90903 3.96764 4.22028 4.34566 4.35985 4.38745 4.45218 4.54435 4.67752 4.73342 4.81787 4.84707 4.88683 4.99048 5.06483 5.10494 5.14487 5.18947 5.19736 5.30122 5.38439 5.53118 5.57191 5.58049 5.71853 5.85562 6.30157 6.40231 6.98143 7.37664 8.09365 8.34035 9.33451 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014457 B = 0.003164 C = 0.002706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.277270 B = 8847.255616 C =10344.137173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.127 4.127 3 C 0.163 3.837 4 H 0.056 0.944 5 C 0.120 3.880 6 N -0.693 5.693 7 C 0.581 3.419 8 O -0.557 6.557 9 C 0.065 3.935 10 N -0.513 5.513 11 S 0.425 5.575 12 C -0.218 4.218 13 C -0.066 4.066 14 C -0.080 4.080 15 C -0.080 4.080 16 C -0.114 4.114 17 C -0.072 4.072 18 C -0.106 4.106 19 N -0.729 5.729 20 C -0.218 4.218 21 H 0.080 0.920 22 C -0.074 4.074 23 N -0.969 5.969 24 Si 0.961 3.039 25 H -0.279 1.279 26 H -0.302 1.302 27 H -0.281 1.281 28 H 0.055 0.945 29 H 0.047 0.953 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.412 0.588 36 H 0.169 0.831 37 H 0.177 0.823 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.095 0.905 41 H 0.130 0.870 42 H 0.371 0.629 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.163 5.609 -10.816 23.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.168 4.168 3 C 0.055 3.945 4 H 0.074 0.926 5 C -0.004 4.004 6 N -0.344 5.344 7 C 0.363 3.637 8 O -0.436 6.436 9 C -0.123 4.123 10 N -0.340 5.340 11 S 0.585 5.415 12 C -0.339 4.339 13 C -0.088 4.088 14 C -0.103 4.103 15 C -0.082 4.082 16 C -0.170 4.170 17 C -0.095 4.095 18 C -0.117 4.117 19 N -0.369 5.369 20 C -0.350 4.350 21 H 0.098 0.902 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.792 3.208 25 H -0.205 1.205 26 H -0.229 1.229 27 H -0.207 1.207 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.187 0.813 37 H 0.194 0.806 38 H 0.101 0.899 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.148 0.852 42 H 0.203 0.797 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 18.711 6.470 -10.677 22.494 hybrid contribution -0.506 -0.792 0.740 1.196 sum 18.205 5.678 -9.937 21.504 Atomic orbital electron populations 1.21696 0.95938 1.00676 1.01731 1.21966 0.96659 0.96837 1.01293 1.20739 0.90702 0.93675 0.89401 0.92641 1.21749 0.94682 0.81794 1.02177 1.45911 1.06671 1.11406 1.70376 1.17416 0.82756 0.86309 0.77232 1.90697 1.56359 1.44865 1.51697 1.21915 0.90122 0.93267 1.06955 1.71277 1.37908 1.05835 1.19027 1.81053 0.88570 1.07574 1.64312 1.24550 1.02967 0.96863 1.09511 1.20426 0.87746 1.01966 0.98626 1.21438 1.00338 0.92066 0.96470 1.20049 0.94712 0.95666 0.97734 1.20912 0.94057 0.98812 1.03245 1.20703 0.90208 1.00112 0.98438 1.19692 0.91834 0.94175 1.05967 1.42570 1.15987 1.66061 1.12299 1.19461 0.92523 1.25378 0.97600 0.90247 1.25415 1.01178 1.03389 0.96671 1.69818 1.36953 1.50813 1.04393 0.85387 0.80901 0.78532 0.76020 1.20544 1.22909 1.20687 0.92624 0.93407 0.93258 0.90306 0.93374 0.92268 0.89291 0.75112 0.81316 0.80599 0.89921 0.91517 0.88663 0.85241 0.79722 0.94490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.18 71.98 0.66 -4.29 16 2 C -0.13 -4.24 5.61 30.60 0.17 -4.07 16 3 C 0.16 6.17 2.59 44.99 0.12 6.28 16 4 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 5 C 0.12 4.22 5.23 86.38 0.45 4.67 16 6 N -0.69 -26.49 5.38 -466.41 -2.51 -29.00 16 7 C 0.58 22.30 7.81 86.65 0.68 22.98 16 8 O -0.56 -22.29 15.01 -4.07 -0.06 -22.35 16 9 C 0.06 2.29 6.82 43.86 0.30 2.59 16 10 N -0.51 -17.92 10.49 -64.53 -0.68 -18.60 16 11 S 0.42 11.04 23.36 -56.49 -1.32 9.72 16 12 C -0.22 -5.30 6.73 22.97 0.15 -5.14 16 13 C -0.07 -1.06 10.03 22.04 0.22 -0.84 16 14 C -0.08 -1.08 9.63 22.09 0.21 -0.86 16 15 C -0.08 -1.44 5.84 -20.15 -0.12 -1.56 16 16 C -0.11 -1.32 9.98 71.23 0.71 -0.61 16 17 C -0.07 -1.90 9.17 22.36 0.21 -1.70 16 18 C -0.11 -3.22 6.10 -20.17 -0.12 -3.34 16 19 N -0.73 -34.99 4.50 -322.94 -1.45 -36.44 16 20 C -0.22 -11.47 7.76 84.03 0.65 -10.82 16 21 H 0.08 4.01 7.33 -2.91 -0.02 3.99 16 22 C -0.07 -4.20 5.50 84.86 0.47 -3.73 16 23 N -0.97 -59.12 13.06 21.65 0.28 -58.84 16 24 Si 0.96 46.06 29.55 68.60 2.03 48.09 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 26 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 27 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 28 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 29 H 0.05 2.01 6.01 -2.39 -0.01 2.00 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.09 2.75 8.14 -2.38 -0.02 2.73 16 35 H 0.41 17.01 7.58 -92.71 -0.70 16.31 16 36 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.18 0.88 8.06 -2.91 -0.02 0.85 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.85 8.07 -2.39 -0.02 0.83 16 40 H 0.09 0.61 8.08 -2.38 -0.02 0.59 16 41 H 0.13 3.76 6.64 -2.92 -0.02 3.74 16 42 H 0.37 19.91 7.80 -92.71 -0.72 19.18 16 43 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 Total: -1.00 -69.36 371.66 0.68 -68.68 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.37 Total: 39.18 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 4.76 Total: -0.43 kcal Atomic # 7 Polarization: -138.53 SS G_CDS: -4.36 Total: -142.89 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.06 Total: -22.35 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Atomic # 16 Polarization: 11.04 SS G_CDS: -1.32 Total: 9.72 kcal Total: -69.36 0.68 -68.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715069906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.839 kcal (2) G-P(sol) polarization free energy of solvation -69.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds