Wall clock time and date at job start Tue Mar 31 2020 17:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21580 * 120.00384 * 359.97438 * 8 7 6 10 10 C 1.47596 * 119.99717 * 179.97438 * 8 7 6 11 11 C 1.40190 * 120.12506 * 0.02562 * 10 8 7 12 12 C 1.35750 * 120.61559 * 180.02562 * 11 10 8 13 13 C 1.41248 * 120.63444 * 359.97421 * 12 11 10 14 14 N 1.34414 * 129.48264 * 180.02562 * 13 12 11 15 15 C 1.28058 * 117.91450 * 179.97438 * 14 13 12 16 16 S 1.70640 * 111.51991 * 0.02562 * 15 14 13 17 17 C 1.40147 * 118.74042 * 0.02562 * 13 12 11 18 18 C 1.38915 * 120.41278 * 359.72677 * 17 13 12 19 19 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 4 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 29 29 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 30 30 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 32 32 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 34 34 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 35 35 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 38 38 H 1.08004 * 119.69675 * 0.02562 * 11 10 8 39 39 H 1.07997 * 119.69006 * 179.97438 * 12 11 10 40 40 H 1.08004 * 124.24214 * 179.97438 * 15 14 13 41 41 H 1.08000 * 120.07705 * 180.28000 * 18 17 13 42 42 H 0.97000 * 119.99792 * 264.99726 * 19 4 2 43 43 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0430 -4.7531 1.8249 10 6 2.3949 -4.9149 3.7215 11 6 3.2746 -4.2622 4.5964 12 6 3.8224 -4.9242 5.6473 13 6 3.5165 -6.2833 5.8804 14 7 3.9506 -7.1023 6.8537 15 6 3.5252 -8.3102 6.8550 16 16 2.4582 -8.5993 5.5551 17 6 2.6370 -6.9356 5.0057 18 6 2.0750 -6.2526 3.9345 19 7 3.5050 -0.7218 1.2488 20 6 4.1901 0.3528 1.7498 21 1 3.6506 1.2005 2.1454 22 6 5.5783 0.3498 1.7547 23 7 6.2368 1.3803 2.2411 24 14 6.5117 -1.1167 1.0710 25 1 6.7647 -0.9108 -0.3777 26 1 7.8064 -1.2561 1.7848 27 1 5.7058 -2.3494 1.2623 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 0.4436 -2.1651 1.3387 36 1 1.8183 -2.6512 0.3177 37 1 2.7232 -2.4351 2.9844 38 1 3.5189 -3.2229 4.4327 39 1 4.4986 -4.4068 6.3117 40 1 3.8070 -9.0530 7.5865 41 1 1.3944 -6.7594 3.2665 42 1 3.9897 -1.4834 0.8938 43 1 7.2068 1.3785 2.2443 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715504177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:55 Heat of formation + Delta-G solvation = 29.897460 kcal Electronic energy + Delta-G solvation = -25796.018290 eV Core-core repulsion = 22160.925357 eV Total energy + Delta-G solvation = -3635.092933 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.81803 -39.54640 -37.55412 -36.66665 -34.14742 -33.18778 -31.42568 -31.02436 -30.44462 -28.17755 -26.31249 -25.68119 -24.02120 -23.00320 -22.42781 -21.62908 -20.42996 -19.61571 -18.96160 -17.91063 -17.16674 -16.67581 -16.17124 -15.56797 -15.45029 -15.11568 -14.66285 -14.48294 -14.18953 -14.09758 -13.91240 -13.59863 -13.22370 -13.08784 -12.97561 -12.63846 -12.54213 -12.23171 -11.97754 -11.67923 -11.30920 -11.16570 -11.13754 -10.92845 -10.68544 -10.48313 -10.32555 -10.18817 -10.06060 -10.00984 -9.89710 -9.54039 -9.10583 -8.99551 -8.81405 -8.41164 -7.39754 -5.86723 -3.23318 -0.12830 0.89140 0.90195 1.36749 1.75620 2.89252 3.26682 3.29446 3.34191 3.40719 3.62587 3.65790 4.31973 4.49746 4.64987 4.72863 4.88502 4.94395 5.09394 5.15248 5.26269 5.35778 5.54130 5.55507 5.63569 5.71557 5.75651 5.85101 5.89956 6.00149 6.02801 6.13911 6.24672 6.30269 6.35069 6.44028 6.53024 6.56505 6.75550 6.96177 7.22546 7.29999 7.66380 7.88976 8.27764 8.31502 9.09113 9.81370 10.00439 11.30694 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.003269 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.326206 B = 8563.603492 C =10123.758957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.174 3.826 5 H 0.064 0.936 6 C 0.109 3.891 7 N -0.707 5.707 8 C 0.556 3.444 9 O -0.546 6.546 10 C -0.111 4.111 11 C -0.074 4.074 12 C -0.066 4.066 13 C 0.097 3.903 14 N -0.466 5.466 15 C 0.068 3.932 16 S 0.106 5.894 17 C -0.193 4.193 18 C -0.009 4.009 19 N -0.747 5.747 20 C -0.244 4.244 21 H 0.095 0.905 22 C 0.010 3.990 23 N -0.929 5.929 24 Si 0.877 3.123 25 H -0.285 1.285 26 H -0.292 1.292 27 H -0.277 1.277 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.410 0.590 38 H 0.146 0.854 39 H 0.144 0.856 40 H 0.206 0.794 41 H 0.145 0.855 42 H 0.362 0.638 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -16.392 6.036 19.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.064 3.936 5 H 0.082 0.918 6 C -0.015 4.015 7 N -0.359 5.359 8 C 0.342 3.658 9 O -0.425 6.425 10 C -0.118 4.118 11 C -0.096 4.096 12 C -0.087 4.087 13 C -0.024 4.024 14 N -0.178 5.178 15 C -0.237 4.237 16 S 0.360 5.640 17 C -0.312 4.312 18 C -0.032 4.032 19 N -0.390 5.390 20 C -0.373 4.373 21 H 0.113 0.887 22 C -0.186 4.186 23 N -0.576 5.576 24 Si 0.707 3.293 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.248 0.752 38 H 0.164 0.836 39 H 0.162 0.838 40 H 0.222 0.778 41 H 0.163 0.837 42 H 0.195 0.805 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.949 -17.303 5.778 20.779 hybrid contribution 1.474 0.048 -0.278 1.500 sum -8.476 -17.255 5.500 19.995 Atomic orbital electron populations 1.21941 0.96597 1.00980 1.01228 1.21692 0.93810 0.98071 0.99427 1.21825 1.04423 0.94183 0.99253 1.20546 0.85066 0.91104 0.96854 0.91847 1.21867 0.97920 0.93138 0.88542 1.45952 1.48336 1.10572 1.31027 1.17995 0.81345 0.82082 0.84360 1.90760 1.36519 1.68048 1.47171 1.19963 1.00277 0.94257 0.97297 1.21009 0.94672 1.00840 0.93056 1.20343 0.99919 0.90331 0.98084 1.19414 0.96276 0.95650 0.91053 1.66201 1.24866 1.03213 1.23516 1.28221 0.97718 0.96385 1.01344 1.84032 1.47341 1.07631 1.24955 1.23735 1.06119 0.98047 1.03260 1.20386 0.96473 0.92566 0.93795 1.42856 1.00342 1.20678 1.75153 1.19039 0.89239 0.96140 1.32903 0.88701 1.24643 0.96188 0.97010 1.00796 1.69683 1.07116 1.29865 1.50937 0.86686 0.79999 0.83437 0.79149 1.21135 1.21805 1.20322 0.92968 0.93383 0.93066 0.91972 0.89270 0.94953 0.93749 0.90828 0.91629 0.75225 0.83601 0.83834 0.77793 0.83705 0.80499 0.92976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.84 37.16 0.33 -1.62 16 2 C -0.11 -1.71 2.69 -90.62 -0.24 -1.95 16 3 C -0.14 -2.43 8.26 37.16 0.31 -2.13 16 4 C 0.17 2.92 2.18 -67.93 -0.15 2.77 16 5 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 6 C 0.11 1.67 4.73 -4.04 -0.02 1.65 16 7 N -0.71 -10.70 5.34 -61.32 -0.33 -11.03 16 8 C 0.56 8.65 7.76 -12.44 -0.10 8.56 16 9 O -0.55 -9.81 16.34 5.30 0.09 -9.73 16 10 C -0.11 -1.52 5.87 -105.00 -0.62 -2.13 16 11 C -0.07 -0.93 9.44 -39.74 -0.38 -1.30 16 12 C -0.07 -0.80 10.03 -39.33 -0.39 -1.20 16 13 C 0.10 1.24 7.00 -84.88 -0.59 0.65 16 14 N -0.47 -5.56 10.56 -12.83 -0.14 -5.69 16 15 C 0.07 0.58 12.11 51.19 0.62 1.20 16 16 S 0.11 0.93 23.17 -107.50 -2.49 -1.56 16 17 C -0.19 -2.32 6.54 -38.61 -0.25 -2.58 16 18 C -0.01 -0.12 9.62 -38.98 -0.37 -0.49 16 19 N -0.75 -15.28 4.24 -53.42 -0.23 -15.50 16 20 C -0.24 -6.01 8.05 -15.06 -0.12 -6.13 16 21 H 0.10 2.53 7.63 -52.49 -0.40 2.13 16 22 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 23 N -0.93 -27.21 13.97 55.49 0.78 -26.43 16 24 Si 0.88 20.76 27.74 -169.99 -4.72 16.05 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.28 -6.15 6.51 56.52 0.37 -5.79 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.62 6.55 -51.93 -0.34 0.28 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.09 1.88 6.01 -51.93 -0.31 1.56 16 33 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.05 6.71 -51.92 -0.35 0.70 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.41 6.08 6.16 -40.82 -0.25 5.83 16 38 H 0.15 1.69 6.38 -52.48 -0.33 1.35 16 39 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 40 H 0.21 0.88 8.06 -52.48 -0.42 0.45 16 41 H 0.15 1.76 7.64 -52.49 -0.40 1.36 16 42 H 0.36 7.59 5.66 -40.82 -0.23 7.36 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 364.78 15.07 5.50 5.50 Total: -1.00 -30.86 364.78 -9.20 -40.06 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -5.59 Total: 12.87 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -2.08 Total: -4.54 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.09 Total: -58.65 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.72 Total: 16.05 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.49 Total: -1.56 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.86 -9.20 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715504177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.961 kcal (2) G-P(sol) polarization free energy of solvation -30.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds