Wall clock time and date at job start Tue Mar 31 2020 17:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 C 1.52996 * 109.47178 * 120.00289 * 2 1 3 5 5 H 1.09000 * 109.47521 * 299.99961 * 4 2 1 6 6 C 1.53003 * 109.47332 * 60.00127 * 4 2 1 7 7 N 1.46501 * 109.47349 * 175.00381 * 6 4 2 8 8 C 1.34775 * 119.99874 * 180.02562 * 7 6 4 9 9 O 1.21580 * 120.00384 * 359.97438 * 8 7 6 10 10 C 1.47596 * 119.99717 * 179.97438 * 8 7 6 11 11 C 1.40190 * 120.12506 * 0.02562 * 10 8 7 12 12 C 1.35750 * 120.61559 * 180.02562 * 11 10 8 13 13 C 1.41248 * 120.63444 * 359.97421 * 12 11 10 14 14 N 1.34414 * 129.48264 * 180.02562 * 13 12 11 15 15 C 1.28058 * 117.91450 * 179.97438 * 14 13 12 16 16 S 1.70640 * 111.51991 * 0.02562 * 15 14 13 17 17 C 1.40147 * 118.74042 * 0.02562 * 13 12 11 18 18 C 1.38915 * 120.41278 * 359.72677 * 17 13 12 19 19 N 1.46505 * 109.47130 * 179.97438 * 4 2 1 20 20 C 1.36931 * 119.99788 * 84.99932 * 19 4 2 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 4 22 22 C 1.38817 * 119.99680 * 179.72358 * 20 19 4 23 23 N 1.31617 * 119.99873 * 180.27450 * 22 20 19 24 24 Si 1.86800 * 120.00209 * 0.27770 * 22 20 19 25 25 H 1.48498 * 109.47118 * 89.99559 * 24 22 20 26 26 H 1.48499 * 109.47134 * 210.00079 * 24 22 20 27 27 H 1.48507 * 109.46904 * 329.99901 * 24 22 20 28 28 H 1.09000 * 109.46863 * 299.99348 * 1 2 3 29 29 H 1.08994 * 109.47323 * 60.00002 * 1 2 3 30 30 H 1.08998 * 109.47238 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47096 * 239.99921 * 2 1 3 32 32 H 1.09003 * 109.47086 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46999 * 300.00196 * 3 2 1 34 34 H 1.09000 * 109.46698 * 60.00552 * 3 2 1 35 35 H 1.09009 * 109.46837 * 294.99855 * 6 4 2 36 36 H 1.09000 * 109.47433 * 54.99587 * 6 4 2 37 37 H 0.97000 * 120.00018 * 359.97438 * 7 6 4 38 38 H 1.08004 * 119.69675 * 0.02562 * 11 10 8 39 39 H 1.07997 * 119.69006 * 179.97438 * 12 11 10 40 40 H 1.08004 * 124.24214 * 179.97438 * 15 14 13 41 41 H 1.08000 * 120.07705 * 180.28000 * 18 17 13 42 42 H 0.97000 * 119.99792 * 264.99726 * 19 4 2 43 43 H 0.97000 * 120.00553 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2076 2.1392 6 6 1.5300 -2.1638 1.2491 7 7 2.1141 -2.8884 2.3806 8 6 1.8060 -4.1849 2.5819 9 8 1.0430 -4.7531 1.8249 10 6 2.3949 -4.9149 3.7215 11 6 3.2746 -4.2622 4.5964 12 6 3.8224 -4.9242 5.6473 13 6 3.5165 -6.2833 5.8804 14 7 3.9506 -7.1023 6.8537 15 6 3.5252 -8.3102 6.8550 16 16 2.4582 -8.5993 5.5551 17 6 2.6370 -6.9356 5.0057 18 6 2.0750 -6.2526 3.9345 19 7 3.5050 -0.7218 1.2488 20 6 4.1901 0.3528 1.7498 21 1 3.6506 1.2005 2.1454 22 6 5.5783 0.3498 1.7547 23 7 6.2368 1.3803 2.2411 24 14 6.5117 -1.1167 1.0710 25 1 6.7647 -0.9108 -0.3777 26 1 7.8064 -1.2561 1.7848 27 1 5.7058 -2.3494 1.2623 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9562 0.8900 35 1 0.4436 -2.1651 1.3387 36 1 1.8183 -2.6512 0.3177 37 1 2.7232 -2.4351 2.9844 38 1 3.5189 -3.2229 4.4327 39 1 4.4986 -4.4068 6.3117 40 1 3.8070 -9.0530 7.5865 41 1 1.3944 -6.7594 3.2665 42 1 3.9897 -1.4834 0.8938 43 1 7.2068 1.3785 2.2443 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715504177.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:50 Heat of formation + Delta-G solvation = 9.733554 kcal Electronic energy + Delta-G solvation = -25796.892663 eV Core-core repulsion = 22160.925357 eV Total energy + Delta-G solvation = -3635.967306 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 3.88 seconds Orbital eigenvalues (eV) -41.76263 -40.67078 -38.93009 -37.64630 -35.44269 -34.93530 -32.74178 -32.33100 -31.55547 -29.52409 -27.57894 -26.61940 -25.43079 -24.24194 -23.46130 -22.94895 -21.57804 -20.96791 -20.05009 -19.40540 -18.39857 -17.68294 -17.11984 -17.05310 -16.51648 -16.28420 -15.93068 -15.75932 -15.56450 -15.09173 -14.99280 -14.72517 -14.69462 -14.41800 -14.29659 -14.04246 -13.59156 -13.45742 -13.03846 -12.97613 -12.87690 -12.79165 -12.51164 -12.23646 -12.01725 -11.95379 -11.76510 -11.47733 -11.32860 -11.31754 -11.19448 -10.85462 -10.77099 -10.20191 -9.85671 -9.26608 -9.24098 -7.94093 -5.26132 -0.99936 -0.03130 0.13698 0.61042 0.86329 1.39748 1.42312 1.48415 1.85281 2.10279 2.52368 2.61603 2.92033 3.37458 3.44036 3.53150 3.62040 3.82678 3.92106 4.03780 4.07525 4.24737 4.29418 4.36447 4.44276 4.62791 4.65099 4.72422 4.87572 4.92621 4.96420 4.97400 5.06111 5.06370 5.17650 5.25392 5.29891 5.40153 5.48040 5.63634 5.77850 5.89186 6.28313 6.44460 6.45251 7.07041 7.14489 7.88716 8.07286 9.26858 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.003269 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.326206 B = 8563.603492 C =10123.758957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C -0.134 4.134 4 C 0.175 3.825 5 H 0.060 0.940 6 C 0.117 3.883 7 N -0.708 5.708 8 C 0.559 3.441 9 O -0.573 6.573 10 C -0.131 4.131 11 C -0.074 4.074 12 C -0.077 4.077 13 C 0.090 3.910 14 N -0.502 5.502 15 C 0.082 3.918 16 S 0.157 5.843 17 C -0.219 4.219 18 C -0.006 4.006 19 N -0.747 5.747 20 C -0.202 4.202 21 H 0.070 0.930 22 C -0.054 4.054 23 N -0.981 5.981 24 Si 0.935 3.065 25 H -0.291 1.291 26 H -0.304 1.304 27 H -0.253 1.253 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.039 0.961 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.411 0.589 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.248 0.752 41 H 0.147 0.853 42 H 0.363 0.637 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.792 -19.134 6.283 22.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 C -0.192 4.192 4 C 0.067 3.933 5 H 0.078 0.922 6 C -0.007 4.007 7 N -0.359 5.359 8 C 0.347 3.653 9 O -0.455 6.455 10 C -0.137 4.137 11 C -0.095 4.095 12 C -0.097 4.097 13 C -0.032 4.032 14 N -0.215 5.215 15 C -0.221 4.221 16 S 0.412 5.588 17 C -0.338 4.338 18 C -0.029 4.029 19 N -0.390 5.390 20 C -0.333 4.333 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.632 5.632 24 Si 0.764 3.236 25 H -0.218 1.218 26 H -0.231 1.231 27 H -0.178 1.178 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.108 0.892 36 H 0.081 0.919 37 H 0.249 0.751 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.264 0.736 41 H 0.165 0.835 42 H 0.196 0.804 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.457 -20.087 6.010 23.894 hybrid contribution 1.795 0.801 -0.283 1.986 sum -9.662 -19.286 5.727 22.319 Atomic orbital electron populations 1.21859 0.93791 1.02156 1.02158 1.21601 0.96101 0.96444 0.98462 1.21723 1.01613 0.95822 1.00020 1.20689 0.82711 0.92577 0.97357 0.92150 1.21780 0.98742 0.91583 0.88564 1.45951 1.48317 1.10653 1.30942 1.18215 0.80763 0.81917 0.84419 1.90735 1.37871 1.68551 1.48319 1.19831 1.01665 0.94795 0.97452 1.21011 0.94514 1.00969 0.93023 1.20496 1.00281 0.90699 0.98258 1.19664 0.96131 0.96030 0.91350 1.66279 1.26643 1.04464 1.24114 1.29037 0.95738 0.96002 1.01277 1.83902 1.46372 1.04603 1.23959 1.23997 1.06328 1.00288 1.03164 1.20435 0.96199 0.92349 0.93954 1.42835 1.01997 1.19382 1.74739 1.18931 0.88944 0.95804 1.29634 0.91211 1.25216 0.97312 0.99386 1.02690 1.69837 1.06843 1.32328 1.54229 0.85722 0.78481 0.81692 0.77662 1.21799 1.23127 1.17768 0.92508 0.92067 0.91765 0.92022 0.93357 0.93045 0.94179 0.89198 0.91900 0.75101 0.83264 0.82876 0.73600 0.83546 0.80428 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.84 71.98 0.64 -2.64 16 2 C -0.10 -3.13 2.69 -10.80 -0.03 -3.15 16 3 C -0.13 -4.61 8.26 71.98 0.59 -4.02 16 4 C 0.17 5.65 2.18 44.99 0.10 5.75 16 5 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 6 C 0.12 3.37 4.73 86.38 0.41 3.78 16 7 N -0.71 -20.67 5.34 -466.20 -2.49 -23.16 16 8 C 0.56 16.99 7.76 86.71 0.67 17.66 16 9 O -0.57 -20.14 16.34 -3.97 -0.06 -20.21 16 10 C -0.13 -3.51 5.87 -20.11 -0.12 -3.63 16 11 C -0.07 -1.81 9.44 22.17 0.21 -1.60 16 12 C -0.08 -1.83 10.03 22.43 0.23 -1.61 16 13 C 0.09 2.19 7.00 39.95 0.28 2.47 16 14 N -0.50 -10.96 10.56 -194.44 -2.05 -13.01 16 15 C 0.08 1.13 12.11 130.79 1.58 2.72 16 16 S 0.16 2.29 23.17 -56.49 -1.31 0.98 16 17 C -0.22 -4.96 6.54 22.90 0.15 -4.81 16 18 C -0.01 -0.16 9.62 22.66 0.22 0.06 16 19 N -0.75 -30.10 4.24 -322.93 -1.37 -31.47 16 20 C -0.20 -10.11 8.05 84.04 0.68 -9.43 16 21 H 0.07 3.83 7.63 -2.91 -0.02 3.81 16 22 C -0.05 -2.97 5.50 84.86 0.47 -2.51 16 23 N -0.98 -59.49 13.97 21.65 0.30 -59.19 16 24 Si 0.93 43.47 27.74 68.60 1.90 45.37 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 27 H -0.25 -10.58 6.51 99.48 0.65 -9.93 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.06 1.34 6.55 -2.39 -0.02 1.33 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.05 2.05 6.01 -2.39 -0.01 2.03 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 2.34 6.71 -2.38 -0.02 2.32 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.41 11.89 6.16 -92.71 -0.57 11.32 16 38 H 0.15 3.43 6.38 -2.91 -0.02 3.41 16 39 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 40 H 0.25 0.97 8.06 -2.91 -0.02 0.95 16 41 H 0.15 3.47 7.64 -2.91 -0.02 3.45 16 42 H 0.36 14.74 5.66 -92.71 -0.52 14.21 16 43 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -68.14 364.78 0.90 -67.24 By element: Atomic # 1 Polarization: 34.50 SS G_CDS: -0.10 Total: 34.41 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 6.07 Total: -0.96 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -5.61 Total: -126.83 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.06 Total: -20.21 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.90 Total: 45.37 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -1.31 Total: 0.98 kcal Total: -68.14 0.90 -67.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715504177.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.976 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds