Wall clock time and date at job start Tue Mar 31 2020 17:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21549 * 120.00216 * 359.97438 * 8 7 6 10 10 C 1.47883 * 120.00235 * 179.97438 * 8 7 6 11 11 N 1.32465 * 119.74615 * 359.72899 * 10 8 7 12 12 C 1.31761 * 121.97716 * 179.70874 * 11 10 8 13 13 C 1.37681 * 121.49491 * 0.56912 * 12 11 10 14 14 C 1.41119 * 119.38863 * 359.72550 * 13 12 11 15 15 C 1.44977 * 130.46627 * 179.97438 * 14 13 12 16 16 C 1.32001 * 114.84626 * 179.97438 * 15 14 13 17 17 S 1.75343 * 111.45627 * 359.97438 * 16 15 14 18 18 C 1.40255 * 117.63473 * 359.97438 * 14 13 12 19 19 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 20 20 C 1.36936 * 120.00314 * 84.99627 * 19 4 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 4 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 32 32 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 34 34 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 35 35 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 36 36 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 37 37 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 38 38 H 1.07998 * 119.25525 * 180.31866 * 12 11 10 39 39 H 1.08000 * 120.30314 * 179.70259 * 13 12 11 40 40 H 1.08000 * 122.57628 * 359.97438 * 15 14 13 41 41 H 1.08004 * 124.27438 * 179.97438 * 16 15 14 42 42 H 0.97000 * 120.00040 * 264.99759 * 19 4 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0430 -4.7528 1.8253 10 6 2.3959 -4.9162 3.7239 11 7 3.2310 -4.2938 4.5424 12 6 3.7774 -4.9012 5.5761 13 6 3.5163 -6.2243 5.8535 14 6 2.6395 -6.9473 5.0169 15 6 2.2012 -8.3277 5.0821 16 6 1.3637 -8.6894 4.1281 17 16 1.0206 -7.3597 3.0378 18 6 2.0705 -6.2686 3.9294 19 7 3.5049 -0.7208 1.2496 20 6 4.1892 0.3542 1.7510 21 1 3.6489 1.2015 2.1467 22 6 5.5773 0.3548 1.7508 23 7 6.2349 1.3904 2.2279 24 14 6.5120 -1.1104 1.0659 25 1 6.7659 -2.0882 2.1543 26 1 5.7067 -1.7561 -0.0017 27 1 7.8062 -0.6517 0.5007 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.4436 -2.1650 1.3388 36 1 1.8183 -2.6511 0.3179 37 1 2.7226 -2.4349 2.9849 38 1 4.4485 -4.3500 6.2180 39 1 3.9786 -6.7044 6.7033 40 1 2.5342 -9.0078 5.8522 41 1 0.9429 -9.6793 4.0312 42 1 3.9903 -1.4819 0.8946 43 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715587417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:55 Heat of formation + Delta-G solvation = 30.409195 kcal Electronic energy + Delta-G solvation = -26060.699214 eV Core-core repulsion = 22425.628471 eV Total energy + Delta-G solvation = -3635.070743 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.73626 -39.14575 -37.35819 -36.22398 -34.01312 -33.11155 -31.79989 -30.77742 -30.52452 -28.31340 -26.26339 -24.97551 -24.52149 -23.27335 -21.87685 -21.41838 -20.32129 -19.50403 -18.53203 -17.74614 -17.13444 -16.74967 -15.69265 -15.56268 -15.19327 -15.03219 -14.93403 -14.37123 -14.12796 -14.09152 -13.96726 -13.52626 -13.03032 -12.89655 -12.84667 -12.46780 -12.31834 -12.17125 -12.05981 -11.63334 -11.23637 -11.08713 -11.03332 -10.85944 -10.64515 -10.23236 -10.16845 -10.13685 -10.04294 -10.00130 -9.69559 -9.46756 -9.37564 -8.92427 -8.80245 -7.99541 -7.30911 -5.78823 -3.14516 0.19055 0.59253 1.27695 1.82547 1.89756 2.80488 3.21994 3.37701 3.41565 3.46023 3.70554 4.09926 4.21517 4.48130 4.58078 4.65136 4.94012 5.12611 5.15500 5.20403 5.22814 5.28628 5.44900 5.49955 5.59560 5.69900 5.75341 5.77545 5.90293 5.94653 6.06282 6.19113 6.25900 6.30398 6.39675 6.49357 6.58735 6.61652 6.80410 7.01906 7.35405 7.49305 7.83313 7.96760 8.31639 8.39407 9.17243 9.89900 10.08767 11.38854 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.003746 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.049232 B = 7472.230669 C = 8997.625014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.108 4.108 3 C -0.140 4.140 4 C 0.175 3.825 5 H 0.064 0.936 6 C 0.107 3.893 7 N -0.689 5.689 8 C 0.560 3.440 9 O -0.538 6.538 10 C 0.134 3.866 11 N -0.434 5.434 12 C 0.086 3.914 13 C -0.111 4.111 14 C -0.048 4.048 15 C -0.130 4.130 16 C -0.204 4.204 17 S 0.189 5.811 18 C -0.165 4.165 19 N -0.746 5.746 20 C -0.239 4.239 21 H 0.095 0.905 22 C 0.010 3.990 23 N -0.931 5.931 24 Si 0.877 3.123 25 H -0.284 1.284 26 H -0.278 1.278 27 H -0.293 1.293 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.031 0.969 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.422 0.578 38 H 0.170 0.830 39 H 0.144 0.856 40 H 0.148 0.852 41 H 0.171 0.829 42 H 0.362 0.638 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.259 -17.938 5.625 21.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.130 4.130 3 C -0.197 4.197 4 C 0.065 3.935 5 H 0.082 0.918 6 C -0.017 4.017 7 N -0.340 5.340 8 C 0.344 3.656 9 O -0.416 6.416 10 C -0.016 4.016 11 N -0.146 5.146 12 C -0.069 4.069 13 C -0.132 4.132 14 C -0.064 4.064 15 C -0.160 4.160 16 C -0.340 4.340 17 S 0.453 5.547 18 C -0.284 4.284 19 N -0.389 5.389 20 C -0.369 4.369 21 H 0.113 0.887 22 C -0.186 4.186 23 N -0.578 5.578 24 Si 0.708 3.292 25 H -0.211 1.211 26 H -0.204 1.204 27 H -0.219 1.219 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.260 0.740 38 H 0.187 0.813 39 H 0.162 0.838 40 H 0.165 0.835 41 H 0.188 0.812 42 H 0.195 0.805 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.420 -17.099 3.770 20.905 hybrid contribution 1.949 -1.828 1.275 2.961 sum -9.471 -18.927 5.046 21.758 Atomic orbital electron populations 1.21943 0.96627 1.00957 1.01197 1.21696 0.93772 0.98076 0.99440 1.21825 1.04451 0.94179 0.99218 1.20532 0.85140 0.91025 0.96817 0.91824 1.21918 0.97948 0.93294 0.88510 1.45884 1.47497 1.10110 1.30517 1.17761 0.81548 0.82557 0.83716 1.90743 1.36519 1.67917 1.46395 1.20701 0.95925 0.89020 0.95965 1.67677 1.05894 1.37804 1.03211 1.22589 0.98042 0.92069 0.94184 1.22143 0.96711 0.95065 0.99321 1.19504 0.98111 0.93830 0.94938 1.20764 1.00351 0.93668 1.01243 1.25751 1.03075 1.04821 1.00331 1.84987 1.44979 0.97185 1.27592 1.23659 1.04625 0.98736 1.01384 1.42838 1.00314 1.20862 1.74870 1.19034 0.89264 0.96193 1.32393 0.88717 1.24616 0.96169 0.96955 1.00878 1.69691 1.07031 1.29587 1.51519 0.86670 0.79917 0.83529 0.79121 1.21055 1.20449 1.21912 0.92976 0.93398 0.93080 0.91995 0.89257 0.94971 0.93747 0.90759 0.91541 0.73966 0.81305 0.83776 0.83453 0.81172 0.80521 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.84 37.16 0.33 -1.71 16 2 C -0.11 -1.79 2.69 -90.62 -0.24 -2.04 16 3 C -0.14 -2.53 8.26 37.16 0.31 -2.23 16 4 C 0.17 3.14 2.18 -67.93 -0.15 2.99 16 5 H 0.06 1.19 8.08 -51.92 -0.42 0.77 16 6 C 0.11 1.76 4.73 -4.04 -0.02 1.74 16 7 N -0.69 -11.85 5.38 -61.24 -0.33 -12.18 16 8 C 0.56 9.72 7.80 -12.32 -0.10 9.63 16 9 O -0.54 -9.89 15.03 5.32 0.08 -9.81 16 10 C 0.13 2.14 6.78 -82.75 -0.56 1.58 16 11 N -0.43 -6.68 9.51 -9.78 -0.09 -6.78 16 12 C 0.09 1.02 11.12 -17.79 -0.20 0.82 16 13 C -0.11 -1.11 10.18 -38.69 -0.39 -1.51 16 14 C -0.05 -0.56 6.09 -105.38 -0.64 -1.20 16 15 C -0.13 -1.17 10.39 -38.83 -0.40 -1.58 16 16 C -0.20 -1.81 11.02 28.82 0.32 -1.49 16 17 S 0.19 2.31 21.43 -107.50 -2.30 0.01 16 18 C -0.16 -2.33 6.33 -37.93 -0.24 -2.57 16 19 N -0.75 -16.33 4.24 -53.43 -0.23 -16.55 16 20 C -0.24 -6.21 8.05 -15.06 -0.12 -6.33 16 21 H 0.10 2.64 7.63 -52.49 -0.40 2.24 16 22 C 0.01 0.28 5.50 -17.43 -0.10 0.18 16 23 N -0.93 -28.13 13.97 55.49 0.78 -27.35 16 24 Si 0.88 21.78 27.74 -169.99 -4.72 17.07 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.64 6.51 56.52 0.37 -6.28 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.09 1.95 6.01 -51.93 -0.31 1.63 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.80 8.14 -51.92 -0.42 0.38 16 35 H 0.07 1.12 6.71 -51.93 -0.35 0.77 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.42 7.63 7.46 -40.82 -0.30 7.33 16 38 H 0.17 1.54 8.06 -52.49 -0.42 1.11 16 39 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.15 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.17 0.96 8.06 -52.48 -0.42 0.53 16 42 H 0.36 8.15 5.66 -40.82 -0.23 7.92 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 365.47 15.07 5.51 5.51 Total: -1.00 -31.50 365.47 -9.27 -40.77 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.75 Total: 13.02 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.13 Total: -62.87 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.07 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.30 Total: 0.01 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.50 -9.27 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715587417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.176 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds