Wall clock time and date at job start Tue Mar 31 2020 17:11:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47010 * 120.00125 * 2 1 3 5 5 H 1.09008 * 109.47230 * 299.99805 * 4 2 1 6 6 C 1.53004 * 109.47083 * 59.99777 * 4 2 1 7 7 N 1.46502 * 109.46925 * 175.00128 * 6 4 2 8 8 C 1.34769 * 119.99943 * 180.02562 * 7 6 4 9 9 O 1.21549 * 120.00216 * 359.97438 * 8 7 6 10 10 C 1.47883 * 120.00235 * 179.97438 * 8 7 6 11 11 N 1.32465 * 119.74615 * 359.72899 * 10 8 7 12 12 C 1.31761 * 121.97716 * 179.70874 * 11 10 8 13 13 C 1.37681 * 121.49491 * 0.56912 * 12 11 10 14 14 C 1.41119 * 119.38863 * 359.72550 * 13 12 11 15 15 C 1.44977 * 130.46627 * 179.97438 * 14 13 12 16 16 C 1.32001 * 114.84626 * 179.97438 * 15 14 13 17 17 S 1.75343 * 111.45627 * 359.97438 * 16 15 14 18 18 C 1.40255 * 117.63473 * 359.97438 * 14 13 12 19 19 N 1.46493 * 109.47225 * 180.02562 * 4 2 1 20 20 C 1.36936 * 120.00314 * 84.99627 * 19 4 2 21 21 H 1.08001 * 120.00159 * 0.02562 * 20 19 4 22 22 C 1.38811 * 119.99842 * 180.02562 * 20 19 4 23 23 N 1.31624 * 119.99540 * 179.72505 * 22 20 19 24 24 Si 1.86800 * 120.00451 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46758 * 269.72270 * 24 22 20 26 26 H 1.48499 * 109.47026 * 29.72118 * 24 22 20 27 27 H 1.48496 * 109.47474 * 149.72153 * 24 22 20 28 28 H 1.09008 * 109.46965 * 299.99907 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99864 * 1 2 3 30 30 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46945 * 239.99919 * 2 1 3 32 32 H 1.09003 * 109.47146 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47253 * 300.00028 * 3 2 1 34 34 H 1.09008 * 109.47122 * 60.00190 * 3 2 1 35 35 H 1.08997 * 109.47038 * 294.99798 * 6 4 2 36 36 H 1.08999 * 109.47047 * 55.00424 * 6 4 2 37 37 H 0.97003 * 120.00245 * 0.02562 * 7 6 4 38 38 H 1.07998 * 119.25525 * 180.31866 * 12 11 10 39 39 H 1.08000 * 120.30314 * 179.70259 * 13 12 11 40 40 H 1.08000 * 122.57628 * 359.97438 * 15 14 13 41 41 H 1.08004 * 124.27438 * 179.97438 * 16 15 14 42 42 H 0.97000 * 120.00040 * 264.99759 * 19 4 2 43 43 H 0.96999 * 119.99889 * 180.27497 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -0.2074 2.1393 6 6 1.5299 -2.1638 1.2492 7 7 2.1140 -2.8883 2.3807 8 6 1.8059 -4.1847 2.5821 9 8 1.0430 -4.7528 1.8253 10 6 2.3959 -4.9162 3.7239 11 7 3.2310 -4.2938 4.5424 12 6 3.7774 -4.9012 5.5761 13 6 3.5163 -6.2243 5.8535 14 6 2.6395 -6.9473 5.0169 15 6 2.2012 -8.3277 5.0821 16 6 1.3637 -8.6894 4.1281 17 16 1.0206 -7.3597 3.0378 18 6 2.0705 -6.2686 3.9294 19 7 3.5049 -0.7208 1.2496 20 6 4.1892 0.3542 1.7510 21 1 3.6489 1.2015 2.1467 22 6 5.5773 0.3548 1.7508 23 7 6.2349 1.3904 2.2279 24 14 6.5120 -1.1104 1.0659 25 1 6.7659 -2.0882 2.1543 26 1 5.7067 -1.7561 -0.0017 27 1 7.8062 -0.6517 0.5007 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 0.4436 -2.1650 1.3388 36 1 1.8183 -2.6511 0.3179 37 1 2.7226 -2.4349 2.9849 38 1 4.4485 -4.3500 6.2180 39 1 3.9786 -6.7044 6.7033 40 1 2.5342 -9.0078 5.8522 41 1 0.9429 -9.6793 4.0312 42 1 3.9903 -1.4819 0.8946 43 1 7.2049 1.3925 2.2241 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715587417.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:53 Heat of formation + Delta-G solvation = 9.326704 kcal Electronic energy + Delta-G solvation = -26061.613419 eV Core-core repulsion = 22425.628471 eV Total energy + Delta-G solvation = -3635.984948 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.75872 -40.36749 -38.85607 -37.06350 -35.39821 -34.94648 -32.87647 -32.56175 -31.38592 -29.80141 -27.60149 -26.25483 -25.38113 -24.88023 -23.30036 -22.43125 -21.53102 -20.94681 -19.81774 -19.18823 -18.39477 -17.73943 -17.13061 -16.88083 -16.47082 -16.20841 -15.88528 -15.77138 -15.31161 -15.23382 -15.10521 -14.92111 -14.69612 -14.40310 -14.22451 -13.63100 -13.51565 -13.21110 -12.98289 -12.93845 -12.90096 -12.85741 -12.50449 -12.34871 -12.01960 -11.92177 -11.75265 -11.51140 -11.34439 -11.25087 -10.96016 -10.90905 -10.76974 -10.22520 -10.15547 -9.27859 -8.89749 -7.95882 -5.27280 -0.71852 -0.32835 0.39876 1.03518 1.08780 1.37422 1.39089 1.43995 1.71070 2.01482 2.50365 2.68414 3.06401 3.35145 3.44394 3.54488 3.62080 3.72548 3.82241 4.16419 4.22358 4.26450 4.30750 4.40075 4.42423 4.53263 4.60532 4.67470 4.78542 4.90071 4.94726 5.01334 5.02893 5.15650 5.23064 5.23500 5.27697 5.41994 5.44602 5.61446 5.76647 5.86430 6.26710 6.32141 6.68144 7.00367 7.12143 7.86723 8.04984 9.25342 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012724 B = 0.003746 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.049232 B = 7472.230669 C = 8997.625014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 C -0.134 4.134 4 C 0.175 3.825 5 H 0.057 0.943 6 C 0.116 3.884 7 N -0.695 5.695 8 C 0.557 3.443 9 O -0.555 6.555 10 C 0.098 3.902 11 N -0.463 5.463 12 C 0.068 3.932 13 C -0.086 4.086 14 C -0.058 4.058 15 C -0.125 4.125 16 C -0.188 4.188 17 S 0.138 5.862 18 C -0.182 4.182 19 N -0.747 5.747 20 C -0.202 4.202 21 H 0.070 0.930 22 C -0.054 4.054 23 N -0.980 5.980 24 Si 0.936 3.064 25 H -0.285 1.285 26 H -0.264 1.264 27 H -0.302 1.302 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.039 0.961 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.416 0.584 38 H 0.194 0.806 39 H 0.191 0.809 40 H 0.189 0.811 41 H 0.207 0.793 42 H 0.361 0.639 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 -21.111 6.529 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 C -0.191 4.191 4 C 0.067 3.933 5 H 0.075 0.925 6 C -0.007 4.007 7 N -0.345 5.345 8 C 0.342 3.658 9 O -0.435 6.435 10 C -0.050 4.050 11 N -0.175 5.175 12 C -0.087 4.087 13 C -0.107 4.107 14 C -0.074 4.074 15 C -0.154 4.154 16 C -0.323 4.323 17 S 0.401 5.599 18 C -0.302 4.302 19 N -0.389 5.389 20 C -0.333 4.333 21 H 0.088 0.912 22 C -0.245 4.245 23 N -0.632 5.632 24 Si 0.766 3.234 25 H -0.211 1.211 26 H -0.189 1.189 27 H -0.229 1.229 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.253 0.747 38 H 0.210 0.790 39 H 0.208 0.792 40 H 0.206 0.794 41 H 0.224 0.776 42 H 0.194 0.806 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -12.463 -20.312 4.649 24.280 hybrid contribution 2.162 -0.887 1.098 2.582 sum -10.301 -21.199 5.747 24.260 Atomic orbital electron populations 1.21860 0.93664 1.02158 1.02231 1.21589 0.96183 0.96498 0.98205 1.21722 1.01631 0.95705 1.00090 1.20683 0.82748 0.92481 0.97382 0.92495 1.21837 0.98770 0.91744 0.88389 1.45908 1.47649 1.10395 1.30554 1.18084 0.81210 0.82367 0.84099 1.90714 1.37305 1.68217 1.47238 1.20460 0.97966 0.90015 0.96587 1.67583 1.06481 1.39119 1.04364 1.23135 0.98388 0.93435 0.93757 1.22621 0.94635 0.94045 0.99361 1.20050 0.98020 0.95137 0.94242 1.21135 0.99642 0.92686 1.01952 1.26054 1.02760 1.04736 0.98732 1.85079 1.45757 0.99313 1.29738 1.23852 1.05281 0.98440 1.02610 1.42828 1.02032 1.19566 1.74508 1.18939 0.89056 0.95853 1.29421 0.91191 1.25190 0.97256 0.99334 1.02740 1.69838 1.06867 1.31908 1.54557 0.85703 0.78354 0.80678 0.78711 1.21125 1.18917 1.22880 0.92563 0.91802 0.91813 0.92022 0.93374 0.92778 0.94223 0.89039 0.91760 0.74661 0.78965 0.79218 0.79440 0.77607 0.80632 0.93678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.52 8.84 71.98 0.64 -2.88 16 2 C -0.10 -3.32 2.69 -10.79 -0.03 -3.35 16 3 C -0.13 -4.84 8.26 71.98 0.59 -4.25 16 4 C 0.18 6.27 2.18 44.99 0.10 6.37 16 5 H 0.06 2.14 8.08 -2.38 -0.02 2.12 16 6 C 0.12 3.77 4.73 86.38 0.41 4.18 16 7 N -0.69 -24.25 5.38 -465.94 -2.51 -26.75 16 8 C 0.56 19.75 7.80 86.80 0.68 20.43 16 9 O -0.56 -20.83 15.03 -3.87 -0.06 -20.88 16 10 C 0.10 3.19 6.78 42.18 0.29 3.47 16 11 N -0.46 -14.28 9.51 -184.86 -1.76 -16.03 16 12 C 0.07 1.51 11.12 84.57 0.94 2.45 16 13 C -0.09 -1.44 10.18 22.85 0.23 -1.20 16 14 C -0.06 -1.20 6.09 -20.36 -0.12 -1.32 16 15 C -0.13 -1.74 10.39 23.09 0.24 -1.50 16 16 C -0.19 -2.71 11.02 66.91 0.74 -1.97 16 17 S 0.14 3.30 21.43 -56.49 -1.21 2.08 16 18 C -0.18 -5.06 6.33 23.34 0.15 -4.91 16 19 N -0.75 -32.97 4.24 -322.94 -1.37 -34.34 16 20 C -0.20 -10.75 8.05 84.03 0.68 -10.07 16 21 H 0.07 4.05 7.63 -2.91 -0.02 4.03 16 22 C -0.05 -3.08 5.50 84.86 0.47 -2.61 16 23 N -0.98 -61.38 13.97 21.65 0.30 -61.08 16 24 Si 0.94 46.03 27.74 68.60 1.90 47.94 16 25 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 26 H -0.26 -12.15 6.51 99.48 0.65 -11.50 16 27 H -0.30 -15.20 7.11 99.48 0.71 -14.49 16 28 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.06 1.44 6.54 -2.39 -0.02 1.43 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 2.13 6.01 -2.39 -0.01 2.12 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.09 2.66 6.71 -2.39 -0.02 2.64 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.11 16 37 H 0.42 15.46 7.46 -92.71 -0.69 14.76 16 38 H 0.19 3.10 8.06 -2.91 -0.02 3.08 16 39 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.19 1.11 8.06 -2.91 -0.02 1.08 16 41 H 0.21 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.36 16.21 5.66 -92.71 -0.52 15.68 16 43 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -72.31 365.47 1.07 -71.24 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: -0.22 Total: 35.00 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 5.99 Total: 2.83 kcal Atomic # 7 Polarization: -132.88 SS G_CDS: -5.33 Total: -138.21 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.06 Total: -20.88 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.90 Total: 47.94 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -1.21 Total: 2.08 kcal Total: -72.31 1.07 -71.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715587417.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.564 kcal (2) G-P(sol) polarization free energy of solvation -72.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds