Wall clock time and date at job start Tue Mar 31 2020 18:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47405 * 2 1 4 4 C 1.53000 * 109.47455 * 120.00174 * 2 1 3 5 5 N 1.46899 * 109.47118 * 174.99983 * 4 2 1 6 6 C 1.46898 * 110.99840 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.47217 * 179.97438 * 6 5 4 8 8 C 1.38379 * 119.92668 * 270.02296 * 7 6 5 9 9 C 1.38342 * 120.30330 * 179.97438 * 8 7 6 10 10 C 1.37971 * 120.15414 * 359.76671 * 9 8 7 11 11 C 1.39616 * 119.84000 * 0.50917 * 10 9 8 12 12 C 1.43205 * 120.14614 * 179.74514 * 11 10 9 13 13 N 8.56898 * 153.17428 * 72.08271 * 2 1 3 14 14 C 1.37927 * 119.91800 * 89.99937 * 7 6 5 15 15 N 1.46503 * 109.46942 * 240.00260 * 2 1 3 16 16 C 1.34781 * 120.00134 * 85.00155 * 15 2 1 17 17 O 1.21285 * 119.99540 * 359.97438 * 16 15 2 18 18 C 1.50696 * 119.99850 * 180.02562 * 16 15 2 19 19 S 1.81010 * 109.46617 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99618 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00020 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99548 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00353 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47116 * 89.99851 * 24 22 20 26 26 H 1.48500 * 109.46741 * 210.00189 * 24 22 20 27 27 H 1.48503 * 109.47066 * 330.00174 * 24 22 20 28 28 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46837 * 299.99204 * 1 2 3 30 30 H 1.08993 * 109.47170 * 60.00090 * 1 2 3 31 31 H 1.09005 * 109.46716 * 55.00237 * 4 2 1 32 32 H 1.08993 * 109.47462 * 295.00067 * 4 2 1 33 33 H 1.00895 * 111.00041 * 56.04677 * 5 4 2 34 34 H 1.09002 * 109.47233 * 59.99920 * 6 5 4 35 35 H 1.09001 * 109.47479 * 299.99876 * 6 5 4 36 36 H 1.08001 * 119.84560 * 359.97438 * 8 7 6 37 37 H 1.08002 * 119.92142 * 180.02562 * 9 8 7 38 38 H 1.07990 * 120.07818 * 180.25521 * 10 9 8 39 39 H 1.08003 * 120.08118 * 0.04592 * 14 7 6 40 40 H 0.97000 * 120.00057 * 264.99258 * 15 2 1 41 41 H 1.08997 * 109.47177 * 299.99306 * 18 16 15 42 42 H 1.08997 * 109.47436 * 60.00092 * 18 16 15 43 43 H 0.97002 * 120.00041 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5317 -1.6055 2.2799 8 6 6.1204 -2.6981 1.6680 9 6 7.4977 -2.7880 1.5751 10 6 8.2940 -1.7850 2.0885 11 6 7.7068 -0.6826 2.7123 12 6 8.5272 0.3596 3.2522 13 7 9.1768 1.1897 3.6795 14 6 6.3157 -0.5978 2.8018 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1585 -2.4117 18 6 2.6488 -0.7287 -3.5878 19 16 2.7091 0.4344 -4.9735 20 6 3.3123 -0.6308 -6.2408 21 1 3.5216 -1.6673 -6.0209 22 6 3.5175 -0.1380 -7.5221 23 7 3.2620 1.1250 -7.7903 24 14 4.1564 -1.2675 -8.8659 25 1 3.0106 -1.9052 -9.5627 26 1 4.9509 -0.4772 -9.8404 27 1 5.0157 -2.3178 -8.2628 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6055 -1.7199 1.2950 32 1 1.7518 -0.1585 2.1369 33 1 3.9280 0.0825 1.0823 34 1 3.6096 -2.5200 2.4293 35 1 3.7559 -0.9589 3.2718 36 1 5.5017 -3.4843 1.2611 37 1 7.9507 -3.6434 1.0958 38 1 9.3689 -1.8545 2.0116 39 1 5.8550 0.2543 3.2794 40 1 2.2491 -1.6317 -1.1527 41 1 3.6479 -1.1212 -3.3987 42 1 1.9758 -1.5504 -3.8327 43 1 3.4058 1.4695 -8.6856 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715969579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:47 Heat of formation + Delta-G solvation = 10.611837 kcal Electronic energy + Delta-G solvation = -24287.037429 eV Core-core repulsion = 20651.108209 eV Total energy + Delta-G solvation = -3635.929221 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.06210 -39.31666 -37.23516 -36.60344 -34.69135 -32.39642 -32.09592 -31.70567 -30.89835 -28.44756 -26.88564 -25.44758 -24.33657 -24.15251 -22.04640 -21.53585 -20.19082 -18.81787 -17.78842 -16.73753 -16.69672 -16.30026 -16.04898 -15.44103 -15.01438 -14.87840 -14.77683 -14.64964 -14.32207 -14.23267 -13.87698 -13.53211 -13.37969 -13.15996 -13.14811 -12.79670 -12.65601 -12.49253 -12.40744 -12.34663 -11.97174 -11.78760 -11.71899 -11.39209 -11.03985 -10.99652 -10.96136 -10.72739 -9.77375 -9.44075 -9.31231 -9.28554 -9.03721 -8.79691 -8.75223 -8.18281 -6.45243 -6.18419 -3.88144 0.37440 0.82747 2.30142 2.55620 3.10418 3.20993 3.24398 3.30322 3.34808 3.38667 3.49225 3.77538 3.94762 4.23947 4.27756 4.37562 4.54300 4.63401 4.76903 4.85230 4.94979 5.06784 5.15465 5.16685 5.21344 5.23604 5.33118 5.34383 5.43520 5.49451 5.58757 5.73571 5.79983 5.88279 5.97209 6.01728 6.05812 6.14975 6.22465 6.34808 6.56009 6.78641 6.97962 7.12087 7.62847 7.88275 8.38613 8.74789 9.26964 10.89007 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.002539 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.241964 B =11023.450212 C =12846.905573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.084 0.916 4 C 0.051 3.949 5 N -0.681 5.681 6 C 0.098 3.902 7 C -0.084 4.084 8 C -0.064 4.064 9 C -0.120 4.120 10 C -0.069 4.069 11 C -0.030 4.030 12 C 0.254 3.746 13 N -0.418 5.418 14 C -0.065 4.065 15 N -0.720 5.720 16 C 0.533 3.467 17 O -0.524 6.524 18 C -0.151 4.151 19 S -0.063 6.063 20 C -0.533 4.533 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.044 0.956 33 H 0.348 0.652 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.400 0.600 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.798 -11.289 24.717 27.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.102 0.898 4 C -0.078 4.078 5 N -0.313 5.313 6 C -0.030 4.030 7 C -0.085 4.085 8 C -0.083 4.083 9 C -0.138 4.138 10 C -0.089 4.089 11 C -0.034 4.034 12 C -0.061 4.061 13 N -0.093 5.093 14 C -0.086 4.086 15 N -0.374 5.374 16 C 0.320 3.680 17 O -0.399 6.399 18 C -0.302 4.302 19 S 0.164 5.836 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.504 5.504 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.166 0.834 34 H 0.104 0.896 35 H 0.059 0.941 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.235 0.765 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.305 -8.443 24.782 26.282 hybrid contribution 0.550 -2.128 -0.327 2.222 sum 2.855 -10.571 24.455 26.794 Atomic orbital electron populations 1.22157 0.95147 1.02132 1.02760 1.20829 0.93757 0.97414 0.84020 0.89750 1.22313 0.87859 1.01104 0.96536 1.60435 1.05078 1.26609 1.39176 1.20892 0.89899 1.00470 0.91762 1.19671 0.95376 0.94607 0.98845 1.21328 0.94800 0.97297 0.94876 1.21153 0.93664 0.99064 0.99873 1.21221 1.00539 0.92025 0.95163 1.15936 0.91334 0.92405 1.03702 1.25799 0.93524 0.93214 0.93601 1.81331 1.08814 1.09878 1.09291 1.21062 0.91376 0.98316 0.97827 1.45845 1.68709 1.14023 1.08782 1.20257 0.76759 0.87159 0.83865 1.90690 1.48771 1.15869 1.84569 1.23505 1.03650 1.04667 0.98368 1.85381 1.86268 1.13099 0.98840 1.22870 1.50802 0.98148 0.96361 0.90974 1.24990 0.95173 0.95511 0.97960 1.70021 1.45713 1.13208 1.21427 0.86182 0.78820 0.79988 0.80593 1.20316 1.20801 1.19683 0.92464 0.92064 0.91352 0.90238 0.93772 0.83365 0.89630 0.94062 0.84904 0.84705 0.85002 0.85282 0.76541 0.89260 0.89485 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 2 C 0.15 1.50 2.81 -67.93 -0.19 1.31 16 3 H 0.08 1.06 7.58 -51.93 -0.39 0.66 16 4 C 0.05 0.35 5.24 -3.82 -0.02 0.33 16 5 N -0.68 -4.81 6.21 -115.06 -0.71 -5.52 16 6 C 0.10 0.51 5.81 -4.97 -0.03 0.48 16 7 C -0.08 -0.51 5.39 -104.68 -0.56 -1.07 16 8 C -0.06 -0.36 9.69 -39.49 -0.38 -0.75 16 9 C -0.12 -0.65 10.03 -39.64 -0.40 -1.05 16 10 C -0.07 -0.43 9.76 -39.17 -0.38 -0.81 16 11 C -0.03 -0.23 5.73 -106.93 -0.61 -0.84 16 12 C 0.25 2.44 15.34 -22.43 -0.34 2.10 16 13 N -0.42 -5.08 18.55 41.89 0.78 -4.31 16 14 C -0.06 -0.42 9.41 -39.17 -0.37 -0.79 16 15 N -0.72 -8.99 4.80 -53.80 -0.26 -9.25 16 16 C 0.53 9.66 7.81 -10.99 -0.09 9.58 16 17 O -0.52 -11.62 15.53 5.55 0.09 -11.53 16 18 C -0.15 -3.03 6.16 36.00 0.22 -2.80 16 19 S -0.06 -1.70 20.57 -107.50 -2.21 -3.91 16 20 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 21 H 0.07 1.94 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 24 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.35 2.80 8.72 -39.29 -0.34 2.46 16 34 H 0.09 0.38 8.08 -51.93 -0.42 -0.04 16 35 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 37 H 0.14 0.49 8.06 -52.49 -0.42 0.06 16 38 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.40 4.13 8.60 -40.82 -0.35 3.78 16 41 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 43 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 393.81 15.07 5.93 5.93 Total: -1.00 -35.62 393.81 -9.40 -45.03 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -6.12 Total: 1.20 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: -2.61 Total: -8.48 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.54 Total: -44.62 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.70 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.62 -9.40 -45.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715969579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.640 kcal (2) G-P(sol) polarization free energy of solvation -35.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds