Wall clock time and date at job start Tue Mar 31 2020 18:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47405 * 2 1 4 4 C 1.53000 * 109.47455 * 120.00174 * 2 1 3 5 5 N 1.46899 * 109.47118 * 174.99983 * 4 2 1 6 6 C 1.46898 * 110.99840 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.47217 * 179.97438 * 6 5 4 8 8 C 1.38379 * 119.92668 * 270.02296 * 7 6 5 9 9 C 1.38342 * 120.30330 * 179.97438 * 8 7 6 10 10 C 1.37971 * 120.15414 * 359.76671 * 9 8 7 11 11 C 1.39616 * 119.84000 * 0.50917 * 10 9 8 12 12 C 1.43205 * 120.14614 * 179.74514 * 11 10 9 13 13 N 8.56898 * 153.17428 * 72.08271 * 2 1 3 14 14 C 1.37927 * 119.91800 * 89.99937 * 7 6 5 15 15 N 1.46503 * 109.46942 * 240.00260 * 2 1 3 16 16 C 1.34781 * 120.00134 * 85.00155 * 15 2 1 17 17 O 1.21285 * 119.99540 * 359.97438 * 16 15 2 18 18 C 1.50696 * 119.99850 * 180.02562 * 16 15 2 19 19 S 1.81010 * 109.46617 * 179.97438 * 18 16 15 20 20 C 1.76204 * 99.99618 * 179.97438 * 19 18 16 21 21 H 1.07998 * 120.00020 * 0.02562 * 20 19 18 22 22 C 1.38800 * 119.99548 * 179.97438 * 20 19 18 23 23 N 1.31630 * 120.00353 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47116 * 89.99851 * 24 22 20 26 26 H 1.48500 * 109.46741 * 210.00189 * 24 22 20 27 27 H 1.48503 * 109.47066 * 330.00174 * 24 22 20 28 28 H 1.09004 * 109.46916 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46837 * 299.99204 * 1 2 3 30 30 H 1.08993 * 109.47170 * 60.00090 * 1 2 3 31 31 H 1.09005 * 109.46716 * 55.00237 * 4 2 1 32 32 H 1.08993 * 109.47462 * 295.00067 * 4 2 1 33 33 H 1.00895 * 111.00041 * 56.04677 * 5 4 2 34 34 H 1.09002 * 109.47233 * 59.99920 * 6 5 4 35 35 H 1.09001 * 109.47479 * 299.99876 * 6 5 4 36 36 H 1.08001 * 119.84560 * 359.97438 * 8 7 6 37 37 H 1.08002 * 119.92142 * 180.02562 * 9 8 7 38 38 H 1.07990 * 120.07818 * 180.25521 * 10 9 8 39 39 H 1.08003 * 120.08118 * 0.04592 * 14 7 6 40 40 H 0.97000 * 120.00057 * 264.99258 * 15 2 1 41 41 H 1.08997 * 109.47177 * 299.99306 * 18 16 15 42 42 H 1.08997 * 109.47436 * 60.00092 * 18 16 15 43 43 H 0.97002 * 120.00041 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8266 1.1903 6 6 4.0304 -1.5159 2.3760 7 6 5.5317 -1.6055 2.2799 8 6 6.1204 -2.6981 1.6680 9 6 7.4977 -2.7880 1.5751 10 6 8.2940 -1.7850 2.0885 11 6 7.7068 -0.6826 2.7123 12 6 8.5272 0.3596 3.2522 13 7 9.1768 1.1897 3.6795 14 6 6.3157 -0.5978 2.8018 15 7 2.0183 -0.6906 -1.1962 16 6 2.1470 -0.0182 -2.3572 17 8 1.8582 1.1585 -2.4117 18 6 2.6488 -0.7287 -3.5878 19 16 2.7091 0.4344 -4.9735 20 6 3.3123 -0.6308 -6.2408 21 1 3.5216 -1.6673 -6.0209 22 6 3.5175 -0.1380 -7.5221 23 7 3.2620 1.1250 -7.7903 24 14 4.1564 -1.2675 -8.8659 25 1 3.0106 -1.9052 -9.5627 26 1 4.9509 -0.4772 -9.8404 27 1 5.0157 -2.3178 -8.2628 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 1.6055 -1.7199 1.2950 32 1 1.7518 -0.1585 2.1369 33 1 3.9280 0.0825 1.0823 34 1 3.6096 -2.5200 2.4293 35 1 3.7559 -0.9589 3.2718 36 1 5.5017 -3.4843 1.2611 37 1 7.9507 -3.6434 1.0958 38 1 9.3689 -1.8545 2.0116 39 1 5.8550 0.2543 3.2794 40 1 2.2491 -1.6317 -1.1527 41 1 3.6479 -1.1212 -3.3987 42 1 1.9758 -1.5504 -3.8327 43 1 3.4058 1.4695 -8.6856 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715969579.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:46 Heat of formation + Delta-G solvation = -13.912523 kcal Electronic energy + Delta-G solvation = -24288.100885 eV Core-core repulsion = 20651.108209 eV Total energy + Delta-G solvation = -3636.992677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.70195 -40.43925 -38.02227 -37.42808 -35.53694 -34.55251 -32.98955 -32.21773 -31.74880 -29.84586 -27.62512 -27.42225 -24.87550 -24.70707 -22.57158 -22.40505 -21.43071 -19.80672 -19.35876 -17.81392 -17.46860 -17.16811 -16.85045 -16.65509 -16.35646 -16.04643 -15.83138 -15.62209 -15.24787 -15.04811 -14.79534 -14.58923 -14.41919 -14.16603 -13.99921 -13.93330 -13.78516 -13.25806 -13.13182 -13.09372 -13.01278 -12.86808 -12.85567 -12.68532 -12.53525 -12.21127 -11.94787 -11.74928 -11.64979 -11.11344 -10.80379 -10.21964 -9.95158 -9.88938 -9.79047 -9.27575 -8.62082 -8.31582 -6.08804 -0.15064 0.38731 1.31467 1.44468 1.51033 1.55630 1.61828 1.76848 1.92473 2.30162 2.44424 2.80648 2.89229 3.02476 3.35366 3.41388 3.83927 3.89891 3.97472 4.12985 4.18599 4.24491 4.35713 4.38693 4.43645 4.49786 4.58886 4.63359 4.72267 4.81028 4.82377 4.85232 4.91024 5.09351 5.14228 5.33483 5.33910 5.44873 5.45124 5.62390 5.68149 5.92320 6.10369 6.22986 6.38352 6.40453 6.71359 7.09787 7.43364 8.77602 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.009262 B = 0.002539 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3022.241964 B =11023.450212 C =12846.905573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.143 3.857 3 H 0.058 0.942 4 C 0.064 3.936 5 N -0.693 5.693 6 C 0.103 3.897 7 C -0.090 4.090 8 C -0.063 4.063 9 C -0.122 4.122 10 C -0.071 4.071 11 C -0.051 4.051 12 C 0.277 3.723 13 N -0.473 5.473 14 C -0.067 4.067 15 N -0.691 5.691 16 C 0.534 3.466 17 O -0.573 6.573 18 C -0.126 4.126 19 S -0.156 6.156 20 C -0.543 4.543 21 H 0.083 0.917 22 C 0.011 3.989 23 N -0.913 5.913 24 Si 0.998 3.002 25 H -0.268 1.268 26 H -0.279 1.279 27 H -0.256 1.256 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.030 0.970 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.339 0.661 34 H 0.101 0.899 35 H 0.051 0.949 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.142 0.858 39 H 0.135 0.865 40 H 0.416 0.584 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.513 -14.830 25.671 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.038 3.962 3 H 0.077 0.923 4 C -0.066 4.066 5 N -0.324 5.324 6 C -0.025 4.025 7 C -0.090 4.090 8 C -0.082 4.082 9 C -0.140 4.140 10 C -0.092 4.092 11 C -0.054 4.054 12 C -0.037 4.037 13 N -0.149 5.149 14 C -0.088 4.088 15 N -0.344 5.344 16 C 0.320 3.680 17 O -0.452 6.452 18 C -0.278 4.278 19 S 0.072 5.928 20 C -0.691 4.691 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.550 5.550 24 Si 0.820 3.180 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.180 1.180 28 H 0.094 0.906 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.118 0.882 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.119 0.881 35 H 0.069 0.931 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.253 0.747 41 H 0.124 0.876 42 H 0.124 0.876 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.015 -12.039 25.794 28.537 hybrid contribution 0.576 -1.102 -0.503 1.341 sum 2.591 -13.141 25.291 28.619 Atomic orbital electron populations 1.22106 0.94476 1.03094 1.02047 1.21028 0.94266 0.96532 0.84396 0.92343 1.22219 0.87781 1.01876 0.94691 1.60464 1.05165 1.26277 1.40472 1.20922 0.89142 1.01161 0.91312 1.19806 0.95918 0.94497 0.98788 1.21627 0.95146 0.97431 0.94045 1.21426 0.93735 0.99339 0.99516 1.21426 1.01369 0.91716 0.94645 1.16068 0.91600 0.92527 1.05212 1.26183 0.92585 0.92659 0.92281 1.81338 1.10504 1.11617 1.11427 1.21192 0.91045 0.98808 0.97773 1.45611 1.66621 1.14491 1.07720 1.19973 0.76742 0.86500 0.84794 1.90681 1.51275 1.17897 1.85336 1.23345 1.05313 1.02963 0.96141 1.85578 1.86665 1.17629 1.02967 1.23204 1.50663 0.98449 0.96788 0.89920 1.26138 0.95174 0.97183 1.00804 1.70192 1.47071 1.15526 1.22163 0.84960 0.78436 0.77789 0.76838 1.19309 1.20473 1.18025 0.90585 0.89788 0.95112 0.88166 0.91957 0.84300 0.88051 0.93067 0.83245 0.82685 0.84004 0.84729 0.74709 0.87557 0.87590 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.48 71.98 0.68 -2.14 16 2 C 0.14 2.68 2.81 44.99 0.13 2.81 16 3 H 0.06 1.45 7.58 -2.39 -0.02 1.43 16 4 C 0.06 0.63 5.24 86.30 0.45 1.08 16 5 N -0.69 -7.69 6.21 -517.93 -3.22 -10.91 16 6 C 0.10 0.71 5.81 85.56 0.50 1.21 16 7 C -0.09 -0.85 5.39 -19.90 -0.11 -0.95 16 8 C -0.06 -0.53 9.69 22.33 0.22 -0.32 16 9 C -0.12 -1.03 10.03 22.23 0.22 -0.81 16 10 C -0.07 -0.78 9.76 22.54 0.22 -0.56 16 11 C -0.05 -0.71 5.73 -21.36 -0.12 -0.83 16 12 C 0.28 5.42 15.34 88.32 1.35 6.77 16 13 N -0.47 -11.94 18.55 19.02 0.35 -11.58 16 14 C -0.07 -0.78 9.41 22.54 0.21 -0.57 16 15 N -0.69 -15.94 4.80 -442.52 -2.12 -18.07 16 16 C 0.53 19.17 7.81 87.65 0.68 19.86 16 17 O -0.57 -26.19 15.53 -3.04 -0.05 -26.24 16 18 C -0.13 -4.96 6.16 71.23 0.44 -4.52 16 19 S -0.16 -8.67 20.57 -56.49 -1.16 -9.83 16 20 C -0.54 -31.03 9.50 67.95 0.65 -30.38 16 21 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 22 C 0.01 0.65 5.49 84.86 0.47 1.12 16 23 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 24 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 27 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 28 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.34 4.83 8.72 -89.70 -0.78 4.05 16 34 H 0.10 0.43 8.08 -2.39 -0.02 0.41 16 35 H 0.05 0.28 8.08 -2.39 -0.02 0.26 16 36 H 0.15 0.75 8.06 -2.91 -0.02 0.72 16 37 H 0.16 0.64 8.06 -2.91 -0.02 0.62 16 38 H 0.14 1.18 8.06 -2.92 -0.02 1.15 16 39 H 0.13 1.33 8.06 -2.91 -0.02 1.30 16 40 H 0.42 7.17 8.60 -92.71 -0.80 6.38 16 41 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 42 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 43 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -81.55 393.81 1.56 -79.99 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.54 Total: 15.46 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: 5.99 Total: -8.23 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -4.70 Total: -96.72 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.05 Total: -26.24 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -81.55 1.56 -79.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715969579.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.074 kcal (2) G-P(sol) polarization free energy of solvation -81.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds