Wall clock time and date at job start Tue Mar 31 2020 18:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46462 * 2 1 4 4 C 1.52996 * 109.47076 * 239.99845 * 2 1 3 5 5 C 1.53003 * 109.47039 * 174.99814 * 4 2 1 6 6 N 1.46495 * 109.47021 * 179.97438 * 5 4 2 7 7 C 1.36942 * 119.99778 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00081 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99735 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00478 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99738 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47214 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47030 * 120.00625 * 11 9 7 14 14 H 1.48501 * 109.46967 * 240.00598 * 11 9 7 15 15 N 1.46500 * 109.46967 * 119.99838 * 2 1 3 16 16 C 1.34784 * 119.99951 * 275.00083 * 15 2 1 17 17 O 1.21280 * 119.99844 * 359.97438 * 16 15 2 18 18 C 1.50695 * 119.99925 * 180.02562 * 16 15 2 19 19 C 1.50699 * 109.47251 * 179.97438 * 18 16 15 20 20 N 1.28736 * 121.08395 * 90.02197 * 19 18 16 21 21 S 1.69387 * 108.98436 * 179.97438 * 20 19 18 22 22 C 1.76506 * 96.12023 * 0.02562 * 21 20 19 23 23 C 1.38793 * 133.55703 * 180.02562 * 22 21 20 24 24 C 1.36714 * 119.75470 * 179.97438 * 23 22 21 25 25 C 1.38977 * 120.15465 * 359.97438 * 24 23 22 26 26 C 1.36037 * 121.15817 * 359.97438 * 25 24 23 27 27 C 1.40803 * 105.52227 * 0.22884 * 22 21 20 28 28 H 1.08996 * 109.47407 * 60.00202 * 1 2 3 29 29 H 1.09002 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47372 * 300.00083 * 1 2 3 31 31 H 1.08998 * 109.47302 * 294.99661 * 4 2 1 32 32 H 1.08999 * 109.47330 * 54.99750 * 4 2 1 33 33 H 1.08998 * 109.46949 * 300.00064 * 5 4 2 34 34 H 1.08999 * 109.47111 * 59.99802 * 5 4 2 35 35 H 0.96997 * 120.00407 * 359.97438 * 6 5 4 36 36 H 0.96998 * 120.00151 * 179.97438 * 10 9 7 37 37 H 0.97002 * 120.00127 * 95.00560 * 15 2 1 38 38 H 1.09006 * 109.47445 * 59.99758 * 18 16 15 39 39 H 1.08998 * 109.47170 * 300.00061 * 18 16 15 40 40 H 1.07996 * 120.11863 * 359.97438 * 23 22 21 41 41 H 1.07996 * 119.92210 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.41792 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.89191 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0532 -1.3044 -2.5094 7 6 5.3953 -1.3404 -2.7793 8 1 6.0937 -0.8596 -2.1104 9 6 5.8580 -1.9957 -3.9122 10 7 5.0070 -2.5821 -4.7271 11 14 7.6888 -2.0454 -4.2799 12 1 8.4272 -1.3173 -3.2170 13 1 8.1471 -3.4572 -4.3222 14 1 7.9476 -1.4014 -5.5928 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8590 1.1587 2.4115 18 6 2.6498 -0.7284 3.5875 19 6 2.7010 0.2401 4.7410 20 7 1.6883 0.4007 5.5194 21 16 2.0781 1.5503 6.7007 22 6 3.7201 1.8569 6.1303 23 6 4.7424 2.6906 6.5618 24 6 5.9347 2.7044 5.8928 25 6 6.1232 1.8865 4.7851 26 6 5.1364 1.0604 4.3441 27 6 3.8901 1.0255 5.0067 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7517 -1.7715 -1.2055 32 1 1.6053 -0.2618 -2.1369 33 1 3.8531 0.4370 -1.3573 34 1 3.9995 -1.0727 -0.4259 35 1 3.4260 -1.7366 -3.1100 36 1 5.3304 -3.0397 -5.5189 37 1 2.2491 -1.6317 1.1527 38 1 3.6492 -1.1202 3.3980 39 1 1.9776 -1.5507 3.8326 40 1 4.5966 3.3260 7.4227 41 1 6.7321 3.3517 6.2265 42 1 7.0699 1.9066 4.2658 43 1 5.3052 0.4331 3.4813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716196400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:19 Heat of formation + Delta-G solvation = 14.912020 kcal Electronic energy + Delta-G solvation = -25196.826090 eV Core-core repulsion = 21561.083339 eV Total energy + Delta-G solvation = -3635.742751 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.53731 -39.55562 -37.19386 -36.33890 -34.37494 -32.30849 -31.60034 -30.99269 -30.73551 -29.60505 -27.89052 -24.23789 -23.82966 -23.20630 -22.09643 -21.28989 -20.53903 -19.99371 -18.79333 -17.43871 -17.00747 -16.69357 -16.24752 -15.69599 -15.42070 -15.15094 -14.71728 -14.60810 -14.20128 -14.15915 -13.72432 -13.55742 -13.51230 -13.31783 -12.85809 -12.74564 -12.42851 -12.30285 -12.08472 -11.91965 -11.85805 -11.23693 -11.06800 -11.04157 -10.83504 -10.75618 -10.67031 -10.58542 -10.17262 -10.04758 -9.85845 -9.73667 -9.25220 -9.05436 -8.89593 -8.12830 -6.95855 -5.80157 -3.09040 0.22436 0.87891 1.16682 1.53842 1.80329 2.58068 3.14643 3.37339 3.40580 3.46164 3.48506 3.96177 4.18171 4.52923 4.55008 4.60705 4.77102 4.84815 4.95140 4.97948 4.98583 5.15350 5.23280 5.30127 5.34110 5.52464 5.54884 5.70089 5.71281 5.74846 5.88289 5.91823 6.01909 6.07799 6.20971 6.26428 6.30847 6.31522 6.45633 6.50793 6.77209 6.83229 7.48339 7.66883 8.18439 8.38839 9.49989 10.07804 10.42177 11.42833 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.002677 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.255512 B =10457.591830 C =12252.502030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.070 0.930 9 C -0.015 4.015 10 N -0.933 5.933 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.716 5.716 16 C 0.521 3.479 17 O -0.533 6.533 18 C -0.083 4.083 19 C 0.184 3.816 20 N -0.431 5.431 21 S 0.183 5.817 22 C -0.134 4.134 23 C -0.084 4.084 24 C -0.082 4.082 25 C -0.123 4.123 26 C -0.046 4.046 27 C -0.121 4.121 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.403 0.597 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.648 6.509 23.445 24.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.379 5.379 7 C -0.370 4.370 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.738 3.262 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.368 5.368 16 C 0.305 3.695 17 O -0.409 6.409 18 C -0.128 4.128 19 C -0.007 4.007 20 N -0.242 5.242 21 S 0.338 5.662 22 C -0.254 4.254 23 C -0.107 4.107 24 C -0.104 4.104 25 C -0.143 4.143 26 C -0.068 4.068 27 C -0.132 4.132 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.217 0.783 36 H 0.065 0.935 37 H 0.238 0.762 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.769 7.421 24.731 26.457 hybrid contribution 2.333 -0.768 -1.549 2.904 sum -3.436 6.653 23.182 24.361 Atomic orbital electron populations 1.22161 0.95432 1.02045 1.02321 1.20987 0.93582 0.97681 0.83585 0.89352 1.22069 0.98062 1.00833 0.96359 1.20626 0.90351 0.95585 0.90729 1.42381 1.05406 1.64885 1.25184 1.19266 0.83824 1.28390 1.05548 0.91186 1.24749 0.97724 1.00892 0.97678 1.69665 1.32730 1.40681 1.15151 0.86123 0.85056 0.77226 0.77832 1.20539 1.21846 1.21836 1.46063 1.67060 1.14279 1.09420 1.20075 0.78032 0.87303 0.84068 1.90740 1.49612 1.15764 1.84832 1.20529 1.05621 0.97201 0.89442 1.21788 0.88277 0.95537 0.95081 1.75684 1.25266 1.15673 1.07602 1.84765 1.05171 1.41298 1.34945 1.23472 1.00288 1.01733 0.99915 1.19978 0.91712 0.98258 1.00729 1.21075 0.96722 0.97837 0.94775 1.20819 0.99711 0.96521 0.97225 1.20750 0.90239 0.97748 0.98089 1.20087 0.95942 0.99477 0.97716 0.91519 0.92468 0.92453 0.91289 0.90225 0.96466 0.96389 0.78317 0.93536 0.76211 0.86147 0.86277 0.84951 0.84694 0.84755 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 37.16 0.35 -1.54 16 2 C 0.15 1.91 2.57 -67.93 -0.17 1.73 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 4 C -0.13 -1.99 4.87 -26.73 -0.13 -2.12 16 5 C 0.15 2.95 6.15 -4.04 -0.02 2.93 16 6 N -0.73 -18.12 5.60 -59.91 -0.34 -18.45 16 7 C -0.24 -6.59 9.99 -15.06 -0.15 -6.74 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 10 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 11 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 N -0.72 -8.25 4.53 -53.81 -0.24 -8.49 16 16 C 0.52 6.64 7.79 -10.98 -0.09 6.56 16 17 O -0.53 -9.00 15.70 5.56 0.09 -8.91 16 18 C -0.08 -0.81 5.97 -29.04 -0.17 -0.98 16 19 C 0.18 2.26 5.37 -81.23 -0.44 1.83 16 20 N -0.43 -5.86 11.84 34.00 0.40 -5.45 16 21 S 0.18 2.16 23.86 -107.50 -2.56 -0.41 16 22 C -0.13 -1.52 6.71 -38.41 -0.26 -1.77 16 23 C -0.08 -0.74 10.02 -39.93 -0.40 -1.14 16 24 C -0.08 -0.62 10.01 -39.86 -0.40 -1.02 16 25 C -0.12 -1.02 9.92 -40.10 -0.40 -1.42 16 26 C -0.05 -0.46 9.72 -39.25 -0.38 -0.84 16 27 C -0.12 -1.43 6.04 -105.14 -0.64 -2.06 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.34 7.75 -51.93 -0.40 -0.07 16 35 H 0.38 9.92 7.67 -40.82 -0.31 9.61 16 36 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.40 3.79 8.60 -40.82 -0.35 3.44 16 38 H 0.12 0.84 7.54 -51.93 -0.39 0.45 16 39 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 43 H 0.13 1.14 7.64 -52.49 -0.40 0.74 16 LS Contribution 379.66 15.07 5.72 5.72 Total: -1.00 -35.03 379.66 -10.65 -45.68 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -6.03 Total: 7.55 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -3.39 Total: -7.10 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.55 Total: -59.55 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.56 Total: -0.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.03 -10.65 -45.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716196400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.588 kcal (2) G-P(sol) polarization free energy of solvation -35.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds