Wall clock time and date at job start Tue Mar 31 2020 18:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46462 * 2 1 4 4 C 1.52996 * 109.47076 * 239.99845 * 2 1 3 5 5 C 1.53003 * 109.47039 * 174.99814 * 4 2 1 6 6 N 1.46495 * 109.47021 * 179.97438 * 5 4 2 7 7 C 1.36942 * 119.99778 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00081 * 0.02562 * 7 6 5 9 9 C 1.38813 * 119.99735 * 179.97438 * 7 6 5 10 10 N 1.31617 * 120.00478 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99738 * 180.02562 * 9 7 6 12 12 H 1.48496 * 109.47214 * 0.02562 * 11 9 7 13 13 H 1.48494 * 109.47030 * 120.00625 * 11 9 7 14 14 H 1.48501 * 109.46967 * 240.00598 * 11 9 7 15 15 N 1.46500 * 109.46967 * 119.99838 * 2 1 3 16 16 C 1.34784 * 119.99951 * 275.00083 * 15 2 1 17 17 O 1.21280 * 119.99844 * 359.97438 * 16 15 2 18 18 C 1.50695 * 119.99925 * 180.02562 * 16 15 2 19 19 C 1.50699 * 109.47251 * 179.97438 * 18 16 15 20 20 N 1.28736 * 121.08395 * 90.02197 * 19 18 16 21 21 S 1.69387 * 108.98436 * 179.97438 * 20 19 18 22 22 C 1.76506 * 96.12023 * 0.02562 * 21 20 19 23 23 C 1.38793 * 133.55703 * 180.02562 * 22 21 20 24 24 C 1.36714 * 119.75470 * 179.97438 * 23 22 21 25 25 C 1.38977 * 120.15465 * 359.97438 * 24 23 22 26 26 C 1.36037 * 121.15817 * 359.97438 * 25 24 23 27 27 C 1.40803 * 105.52227 * 0.22884 * 22 21 20 28 28 H 1.08996 * 109.47407 * 60.00202 * 1 2 3 29 29 H 1.09002 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47372 * 300.00083 * 1 2 3 31 31 H 1.08998 * 109.47302 * 294.99661 * 4 2 1 32 32 H 1.08999 * 109.47330 * 54.99750 * 4 2 1 33 33 H 1.08998 * 109.46949 * 300.00064 * 5 4 2 34 34 H 1.08999 * 109.47111 * 59.99802 * 5 4 2 35 35 H 0.96997 * 120.00407 * 359.97438 * 6 5 4 36 36 H 0.96998 * 120.00151 * 179.97438 * 10 9 7 37 37 H 0.97002 * 120.00127 * 95.00560 * 15 2 1 38 38 H 1.09006 * 109.47445 * 59.99758 * 18 16 15 39 39 H 1.08998 * 109.47170 * 300.00061 * 18 16 15 40 40 H 1.07996 * 120.11863 * 359.97438 * 23 22 21 41 41 H 1.07996 * 119.92210 * 180.02562 * 24 23 22 42 42 H 1.08004 * 119.41792 * 180.02562 * 25 24 23 43 43 H 1.08002 * 119.89191 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0532 -1.3044 -2.5094 7 6 5.3953 -1.3404 -2.7793 8 1 6.0937 -0.8596 -2.1104 9 6 5.8580 -1.9957 -3.9122 10 7 5.0070 -2.5821 -4.7271 11 14 7.6888 -2.0454 -4.2799 12 1 8.4272 -1.3173 -3.2170 13 1 8.1471 -3.4572 -4.3222 14 1 7.9476 -1.4014 -5.5928 15 7 2.0183 -0.6906 1.1962 16 6 2.1470 -0.0182 2.3572 17 8 1.8590 1.1587 2.4115 18 6 2.6498 -0.7284 3.5875 19 6 2.7010 0.2401 4.7410 20 7 1.6883 0.4007 5.5194 21 16 2.0781 1.5503 6.7007 22 6 3.7201 1.8569 6.1303 23 6 4.7424 2.6906 6.5618 24 6 5.9347 2.7044 5.8928 25 6 6.1232 1.8865 4.7851 26 6 5.1364 1.0604 4.3441 27 6 3.8901 1.0255 5.0067 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.7517 -1.7715 -1.2055 32 1 1.6053 -0.2618 -2.1369 33 1 3.8531 0.4370 -1.3573 34 1 3.9995 -1.0727 -0.4259 35 1 3.4260 -1.7366 -3.1100 36 1 5.3304 -3.0397 -5.5189 37 1 2.2491 -1.6317 1.1527 38 1 3.6492 -1.1202 3.3980 39 1 1.9776 -1.5507 3.8326 40 1 4.5966 3.3260 7.4227 41 1 6.7321 3.3517 6.2265 42 1 7.0699 1.9066 4.2658 43 1 5.3052 0.4331 3.4813 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716196400.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:18 Heat of formation + Delta-G solvation = -7.881357 kcal Electronic energy + Delta-G solvation = -25197.814485 eV Core-core repulsion = 21561.083339 eV Total energy + Delta-G solvation = -3636.731146 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.41277 -40.46398 -38.14394 -37.48740 -36.06156 -33.68952 -32.73354 -32.11421 -31.48686 -30.56701 -29.37446 -25.89213 -24.76962 -23.95003 -23.36783 -22.57774 -21.62760 -20.89544 -19.55933 -19.18850 -18.23782 -17.42307 -17.32684 -16.69122 -16.46443 -16.10426 -16.06416 -15.59537 -15.45946 -15.21431 -15.09854 -14.88215 -14.64819 -14.39388 -14.21346 -13.75169 -13.28165 -13.11630 -13.07431 -12.89795 -12.87938 -12.85901 -12.62047 -12.37075 -12.20445 -11.95995 -11.91232 -11.80227 -11.63443 -11.61382 -11.08460 -10.93159 -10.78250 -10.09448 -9.98434 -8.98217 -8.95112 -7.94026 -5.22706 -0.54943 0.17568 0.35569 0.69346 0.99986 1.49608 1.50283 1.59644 1.60198 2.23551 2.57435 2.64575 3.17867 3.40381 3.43750 3.62456 3.77749 3.97592 4.04822 4.06949 4.18482 4.21245 4.29242 4.34922 4.41243 4.46435 4.57463 4.63149 4.68353 4.80096 4.85654 4.90472 4.99570 5.01993 5.23861 5.24339 5.28321 5.35359 5.41224 5.51708 5.52328 5.56964 5.81420 6.28755 6.54336 7.22909 7.35345 8.11249 8.34163 9.29691 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012729 B = 0.002677 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.255512 B =10457.591830 C =12252.502030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.067 0.933 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.747 5.747 7 C -0.243 4.243 8 H 0.075 0.925 9 C -0.075 4.075 10 N -0.969 5.969 11 Si 0.971 3.029 12 H -0.265 1.265 13 H -0.292 1.292 14 H -0.296 1.296 15 N -0.707 5.707 16 C 0.523 3.477 17 O -0.579 6.579 18 C -0.079 4.079 19 C 0.178 3.822 20 N -0.465 5.465 21 S 0.163 5.837 22 C -0.149 4.149 23 C -0.092 4.092 24 C -0.072 4.072 25 C -0.124 4.124 26 C -0.060 4.060 27 C -0.147 4.147 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.006 0.994 34 H 0.031 0.969 35 H 0.375 0.625 36 H 0.251 0.749 37 H 0.416 0.584 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.154 0.846 41 H 0.171 0.829 42 H 0.160 0.840 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 6.520 24.259 25.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.157 4.157 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.375 4.375 8 H 0.093 0.907 9 C -0.268 4.268 10 N -0.620 5.620 11 Si 0.800 3.200 12 H -0.189 1.189 13 H -0.219 1.219 14 H -0.223 1.223 15 N -0.360 5.360 16 C 0.308 3.692 17 O -0.458 6.458 18 C -0.123 4.123 19 C -0.012 4.012 20 N -0.276 5.276 21 S 0.319 5.681 22 C -0.269 4.269 23 C -0.115 4.115 24 C -0.094 4.094 25 C -0.144 4.144 26 C -0.082 4.082 27 C -0.158 4.158 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.063 0.937 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.024 0.976 34 H 0.049 0.951 35 H 0.207 0.793 36 H 0.060 0.940 37 H 0.253 0.747 38 H 0.169 0.831 39 H 0.159 0.841 40 H 0.172 0.828 41 H 0.188 0.812 42 H 0.177 0.823 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.051 7.421 25.582 26.943 hybrid contribution 1.853 -0.689 -1.765 2.650 sum -2.198 6.732 23.816 24.847 Atomic orbital electron populations 1.22083 0.94079 1.02954 1.02093 1.20776 0.94494 0.96423 0.83388 0.91448 1.21891 0.94887 1.01778 0.97111 1.20770 0.93217 0.94191 0.89023 1.42595 1.04522 1.65199 1.26630 1.19655 0.85274 1.27275 1.05301 0.90702 1.25553 1.01910 1.01372 0.97934 1.69810 1.34547 1.42025 1.15655 0.85103 0.80287 0.77027 0.77543 1.18897 1.21892 1.22309 1.45973 1.66492 1.14805 1.08719 1.20515 0.77081 0.86758 0.84830 1.90725 1.51667 1.17887 1.85557 1.20646 1.07727 0.96821 0.87111 1.22207 0.88225 0.95584 0.95162 1.75646 1.26345 1.16941 1.08673 1.84605 1.06585 1.41721 1.35230 1.23726 1.00187 1.02731 1.00253 1.20387 0.91527 0.98006 1.01583 1.21532 0.96913 0.97247 0.93740 1.21229 1.00196 0.95627 0.97307 1.21010 0.89996 0.98627 0.98535 1.20326 0.96645 1.00245 0.98600 0.90748 0.90950 0.93702 0.90087 0.90466 0.97589 0.95101 0.79349 0.94004 0.74667 0.83117 0.84149 0.82796 0.81171 0.82284 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.48 71.98 0.68 -2.73 16 2 C 0.15 3.86 2.57 44.99 0.12 3.98 16 3 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 4 C -0.12 -3.33 4.87 30.59 0.15 -3.18 16 5 C 0.15 5.71 6.15 86.38 0.53 6.25 16 6 N -0.75 -36.39 5.60 -343.46 -1.92 -38.31 16 7 C -0.24 -13.20 9.99 84.03 0.84 -12.36 16 8 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 9 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 10 N -0.97 -58.10 13.06 21.65 0.28 -57.81 16 11 Si 0.97 44.90 29.55 68.60 2.03 46.93 16 12 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 13 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 14 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 15 N -0.71 -15.23 4.53 -442.53 -2.00 -17.23 16 16 C 0.52 12.89 7.79 87.65 0.68 13.57 16 17 O -0.58 -19.74 15.70 -3.03 -0.05 -19.79 16 18 C -0.08 -1.43 5.97 29.10 0.17 -1.26 16 19 C 0.18 4.37 5.37 44.74 0.24 4.61 16 20 N -0.46 -12.93 11.84 -46.33 -0.55 -13.48 16 21 S 0.16 4.00 23.86 -56.49 -1.35 2.65 16 22 C -0.15 -3.33 6.71 23.03 0.15 -3.18 16 23 C -0.09 -1.47 10.02 22.05 0.22 -1.25 16 24 C -0.07 -0.88 10.01 22.09 0.22 -0.66 16 25 C -0.12 -1.74 9.92 21.93 0.22 -1.52 16 26 C -0.06 -1.10 9.72 22.49 0.22 -0.88 16 27 C -0.15 -3.41 6.04 -20.20 -0.12 -3.53 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.03 1.08 7.75 -2.39 -0.02 1.06 16 35 H 0.37 19.35 7.67 -92.71 -0.71 18.64 16 36 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.42 6.83 8.60 -92.71 -0.80 6.04 16 38 H 0.15 1.75 7.54 -2.38 -0.02 1.73 16 39 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.15 1.66 8.06 -2.91 -0.02 1.63 16 41 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 43 H 0.14 2.20 7.64 -2.91 -0.02 2.18 16 Total: -1.00 -76.63 379.66 0.76 -75.87 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: -0.46 Total: 27.09 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: 4.79 Total: -5.91 kcal Atomic # 7 Polarization: -122.64 SS G_CDS: -4.19 Total: -126.84 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -0.05 Total: -19.79 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.35 Total: 2.65 kcal Total: -76.63 0.76 -75.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716196400.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.986 kcal (2) G-P(sol) polarization free energy of solvation -76.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds