Wall clock time and date at job start Tue Mar 31 2020 18:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47497 * 2 1 4 4 C 1.52999 * 109.47611 * 120.00758 * 2 1 3 5 5 C 1.52997 * 109.47438 * 184.99997 * 4 2 1 6 6 N 1.46500 * 109.47022 * 179.97438 * 5 4 2 7 7 C 1.36934 * 119.99995 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00110 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00000 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00089 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 120.00105 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47062 * 59.99335 * 11 9 7 13 13 H 1.48496 * 109.47189 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46471 * 299.99394 * 11 9 7 15 15 N 1.46507 * 109.46946 * 240.00428 * 2 1 3 16 16 C 1.34776 * 119.99631 * 85.00060 * 15 2 1 17 17 O 1.21281 * 120.00265 * 359.97438 * 16 15 2 18 18 C 1.50708 * 119.99724 * 179.97438 * 16 15 2 19 19 C 1.50696 * 109.46959 * 179.97438 * 18 16 15 20 20 N 1.28730 * 121.08637 * 269.71710 * 19 18 16 21 21 S 1.69387 * 108.98872 * 180.27659 * 20 19 18 22 22 C 1.76517 * 96.11897 * 359.97438 * 21 20 19 23 23 C 1.38778 * 133.55816 * 179.97438 * 22 21 20 24 24 C 1.36720 * 119.75832 * 180.02562 * 23 22 21 25 25 C 1.38971 * 120.15279 * 0.02562 * 24 23 22 26 26 C 1.36045 * 121.15676 * 0.02562 * 25 24 23 27 27 C 1.40805 * 105.51752 * 0.02562 * 22 21 20 28 28 H 1.09004 * 109.47244 * 59.99070 * 1 2 3 29 29 H 1.09006 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47070 * 299.99144 * 1 2 3 31 31 H 1.09004 * 109.46832 * 304.99836 * 4 2 1 32 32 H 1.09000 * 109.47164 * 64.98983 * 4 2 1 33 33 H 1.09001 * 109.47278 * 299.99318 * 5 4 2 34 34 H 1.08999 * 109.47165 * 59.99811 * 5 4 2 35 35 H 0.97005 * 119.99826 * 359.97438 * 6 5 4 36 36 H 0.97001 * 119.99708 * 180.02562 * 10 9 7 37 37 H 0.96995 * 120.00152 * 264.99596 * 15 2 1 38 38 H 1.09002 * 109.47028 * 60.00195 * 18 16 15 39 39 H 1.08994 * 109.47095 * 300.00023 * 18 16 15 40 40 H 1.08005 * 120.12012 * 359.97438 * 23 22 21 41 41 H 1.08001 * 119.92156 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.42200 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.89102 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3951 -1.3395 2.7799 8 1 6.0936 -0.8593 2.1107 9 6 5.8578 -1.9940 3.9132 10 7 5.0067 -2.5797 4.7286 11 14 7.6885 -2.0423 4.2819 12 1 8.1995 -0.6563 4.4341 13 1 7.9203 -2.7959 5.5403 14 1 8.4009 -2.7127 3.1646 15 7 2.0182 -0.6906 -1.1963 16 6 2.1469 -0.0180 -2.3572 17 8 1.8581 1.1586 -2.4116 18 6 2.6498 -0.7282 -3.5876 19 6 2.6997 0.2400 -4.7413 20 7 1.6884 0.3961 -5.5223 21 16 2.0788 1.5419 -6.7072 22 6 3.7192 1.8533 -6.1346 23 6 4.7410 2.6868 -6.5672 24 6 5.9320 2.7050 -5.8960 25 6 6.1196 1.8917 -4.7849 26 6 5.1332 1.0656 -4.3427 27 6 3.8903 1.0219 -5.0112 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.6055 -0.2619 2.1369 32 1 1.7516 -1.7716 1.2054 33 1 3.9995 -1.0729 0.4258 34 1 3.8532 0.4368 1.3573 35 1 3.4257 -1.7347 3.1112 36 1 5.3300 -3.0367 5.5207 37 1 2.2490 -1.6317 -1.1528 38 1 1.9775 -1.5505 -3.8328 39 1 3.6491 -1.1200 -3.3981 40 1 4.5962 3.3182 -7.4314 41 1 6.7291 3.3524 -6.2306 42 1 7.0652 1.9152 -4.2638 43 1 5.3013 0.4419 -3.4772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716196401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:24 Heat of formation + Delta-G solvation = 15.081615 kcal Electronic energy + Delta-G solvation = -25194.986694 eV Core-core repulsion = 21559.251297 eV Total energy + Delta-G solvation = -3635.735397 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53641 -39.55563 -37.19378 -36.33840 -34.37132 -32.30724 -31.59962 -30.99094 -30.73561 -29.60433 -27.88799 -24.23502 -23.82740 -23.20570 -22.09387 -21.28711 -20.53817 -19.99327 -18.79312 -17.43671 -17.00448 -16.69363 -16.24599 -15.69578 -15.42056 -15.15102 -14.71507 -14.60791 -14.20011 -14.15735 -13.71580 -13.56358 -13.51334 -13.32014 -12.84528 -12.74699 -12.42672 -12.30552 -12.08349 -11.92067 -11.85771 -11.23080 -11.06006 -11.03755 -10.81471 -10.75350 -10.66938 -10.59636 -10.17223 -10.09978 -9.85725 -9.72511 -9.25267 -9.05269 -8.88475 -8.12803 -6.95711 -5.79558 -3.08530 0.22419 0.87937 1.16675 1.53841 1.80385 2.58144 3.14612 3.37322 3.41571 3.46078 3.47181 3.96248 4.18173 4.53087 4.55196 4.60716 4.77122 4.84820 4.95243 4.97969 4.98679 5.15393 5.23400 5.30143 5.34208 5.52658 5.54891 5.70158 5.71344 5.74950 5.88289 5.91979 6.02020 6.07780 6.21184 6.26588 6.30974 6.31646 6.45639 6.50867 6.77394 6.83441 7.48443 7.66152 8.18510 8.39456 9.50398 10.08203 10.42659 11.43291 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.002675 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.486656 B =10463.885029 C =12257.562823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.135 4.135 5 C 0.155 3.845 6 N -0.734 5.734 7 C -0.241 4.241 8 H 0.069 0.931 9 C -0.014 4.014 10 N -0.934 5.934 11 Si 0.907 3.093 12 H -0.286 1.286 13 H -0.291 1.291 14 H -0.286 1.286 15 N -0.716 5.716 16 C 0.521 3.479 17 O -0.533 6.533 18 C -0.083 4.083 19 C 0.184 3.816 20 N -0.431 5.431 21 S 0.182 5.818 22 C -0.134 4.134 23 C -0.084 4.084 24 C -0.081 4.081 25 C -0.123 4.123 26 C -0.046 4.046 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.018 0.982 34 H 0.017 0.983 35 H 0.383 0.617 36 H 0.256 0.744 37 H 0.403 0.597 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.641 6.468 -23.386 24.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.106 0.894 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.378 5.378 7 C -0.372 4.372 8 H 0.087 0.913 9 C -0.210 4.210 10 N -0.583 5.583 11 Si 0.738 3.262 12 H -0.212 1.212 13 H -0.217 1.217 14 H -0.212 1.212 15 N -0.368 5.368 16 C 0.305 3.695 17 O -0.410 6.410 18 C -0.128 4.128 19 C -0.006 4.006 20 N -0.242 5.242 21 S 0.338 5.662 22 C -0.254 4.254 23 C -0.107 4.107 24 C -0.104 4.104 25 C -0.143 4.143 26 C -0.068 4.068 27 C -0.133 4.133 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.217 0.783 36 H 0.066 0.934 37 H 0.238 0.762 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.152 0.848 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.764 7.363 -24.661 26.374 hybrid contribution 2.342 -0.749 1.531 2.897 sum -3.422 6.614 -23.130 24.299 Atomic orbital electron populations 1.22161 0.95430 1.02045 1.02322 1.20988 0.93583 0.97681 0.83583 0.89352 1.22069 0.98063 1.00831 0.96358 1.20626 0.90350 0.95586 0.90728 1.42364 1.05372 1.65005 1.25087 1.19174 0.83831 1.28614 1.05576 0.91297 1.24747 0.97712 1.00857 0.97653 1.69648 1.32906 1.40606 1.15107 0.86267 0.85092 0.77512 0.77315 1.21243 1.21662 1.21242 1.46063 1.67052 1.14277 1.09427 1.20077 0.78036 0.87299 0.84068 1.90741 1.49604 1.15782 1.84830 1.20533 1.05625 0.97195 0.89448 1.21782 0.88261 0.95543 0.95057 1.75681 1.25330 1.15758 1.07476 1.84768 1.05307 1.41430 1.34698 1.23469 1.00293 1.01651 0.99965 1.19978 0.91723 0.98279 1.00711 1.21077 0.96723 0.97836 0.94759 1.20819 0.99690 0.96570 0.97210 1.20752 0.90295 0.97698 0.98052 1.20090 0.95958 0.99534 0.97687 0.92450 0.92466 0.91519 0.90227 0.91290 0.96390 0.96482 0.78312 0.93433 0.76211 0.86278 0.86139 0.84951 0.84692 0.84754 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.48 37.15 0.35 -1.54 16 2 C 0.15 1.91 2.57 -67.93 -0.17 1.73 16 3 H 0.09 1.32 7.58 -51.93 -0.39 0.93 16 4 C -0.13 -1.99 4.87 -26.73 -0.13 -2.12 16 5 C 0.15 2.95 6.15 -4.04 -0.02 2.93 16 6 N -0.73 -18.13 5.60 -59.91 -0.34 -18.47 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 10 N -0.93 -27.90 13.06 55.49 0.72 -27.17 16 11 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 15 N -0.72 -8.26 4.53 -53.80 -0.24 -8.50 16 16 C 0.52 6.65 7.79 -10.98 -0.09 6.56 16 17 O -0.53 -9.01 15.70 5.56 0.09 -8.92 16 18 C -0.08 -0.81 5.97 -29.03 -0.17 -0.98 16 19 C 0.18 2.27 5.37 -81.23 -0.44 1.83 16 20 N -0.43 -5.86 11.84 34.00 0.40 -5.46 16 21 S 0.18 2.16 23.86 -107.50 -2.56 -0.41 16 22 C -0.13 -1.51 6.71 -38.41 -0.26 -1.77 16 23 C -0.08 -0.74 10.02 -39.93 -0.40 -1.14 16 24 C -0.08 -0.62 10.01 -39.86 -0.40 -1.02 16 25 C -0.12 -1.02 9.92 -40.10 -0.40 -1.42 16 26 C -0.05 -0.46 9.72 -39.24 -0.38 -0.84 16 27 C -0.12 -1.43 6.04 -105.14 -0.64 -2.07 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.02 0.34 7.75 -51.93 -0.40 -0.07 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.38 9.93 7.67 -40.82 -0.31 9.62 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.40 3.80 8.60 -40.82 -0.35 3.44 16 38 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.12 0.84 7.55 -51.93 -0.39 0.45 16 40 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 41 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 1.14 7.65 -52.49 -0.40 0.74 16 LS Contribution 379.68 15.07 5.72 5.72 Total: -1.00 -34.99 379.68 -10.65 -45.64 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.03 Total: 7.65 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -3.39 Total: -7.12 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.55 Total: -59.60 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -2.56 Total: -0.41 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.99 -10.65 -45.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716196401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.725 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds