Wall clock time and date at job start Tue Mar 31 2020 18:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47497 * 2 1 4 4 C 1.52999 * 109.47611 * 120.00758 * 2 1 3 5 5 C 1.52997 * 109.47438 * 184.99997 * 4 2 1 6 6 N 1.46500 * 109.47022 * 179.97438 * 5 4 2 7 7 C 1.36934 * 119.99995 * 180.02562 * 6 5 4 8 8 H 1.07997 * 120.00110 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00000 * 180.02562 * 7 6 5 10 10 N 1.31620 * 120.00089 * 359.97438 * 9 7 6 11 11 Si 1.86808 * 120.00105 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47062 * 59.99335 * 11 9 7 13 13 H 1.48496 * 109.47189 * 179.97438 * 11 9 7 14 14 H 1.48506 * 109.46471 * 299.99394 * 11 9 7 15 15 N 1.46507 * 109.46946 * 240.00428 * 2 1 3 16 16 C 1.34776 * 119.99631 * 85.00060 * 15 2 1 17 17 O 1.21281 * 120.00265 * 359.97438 * 16 15 2 18 18 C 1.50708 * 119.99724 * 179.97438 * 16 15 2 19 19 C 1.50696 * 109.46959 * 179.97438 * 18 16 15 20 20 N 1.28730 * 121.08637 * 269.71710 * 19 18 16 21 21 S 1.69387 * 108.98872 * 180.27659 * 20 19 18 22 22 C 1.76517 * 96.11897 * 359.97438 * 21 20 19 23 23 C 1.38778 * 133.55816 * 179.97438 * 22 21 20 24 24 C 1.36720 * 119.75832 * 180.02562 * 23 22 21 25 25 C 1.38971 * 120.15279 * 0.02562 * 24 23 22 26 26 C 1.36045 * 121.15676 * 0.02562 * 25 24 23 27 27 C 1.40805 * 105.51752 * 0.02562 * 22 21 20 28 28 H 1.09004 * 109.47244 * 59.99070 * 1 2 3 29 29 H 1.09006 * 109.47200 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47070 * 299.99144 * 1 2 3 31 31 H 1.09004 * 109.46832 * 304.99836 * 4 2 1 32 32 H 1.09000 * 109.47164 * 64.98983 * 4 2 1 33 33 H 1.09001 * 109.47278 * 299.99318 * 5 4 2 34 34 H 1.08999 * 109.47165 * 59.99811 * 5 4 2 35 35 H 0.97005 * 119.99826 * 359.97438 * 6 5 4 36 36 H 0.97001 * 119.99708 * 180.02562 * 10 9 7 37 37 H 0.96995 * 120.00152 * 264.99596 * 15 2 1 38 38 H 1.09002 * 109.47028 * 60.00195 * 18 16 15 39 39 H 1.08994 * 109.47095 * 300.00023 * 18 16 15 40 40 H 1.08005 * 120.12012 * 359.97438 * 23 22 21 41 41 H 1.08001 * 119.92156 * 179.97438 * 24 23 22 42 42 H 1.07997 * 119.42200 * 179.97438 * 25 24 23 43 43 H 1.07996 * 119.89102 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7214 1.2491 5 6 3.5648 -0.6134 1.3135 6 7 4.0531 -1.3037 2.5099 7 6 5.3951 -1.3395 2.7799 8 1 6.0936 -0.8593 2.1107 9 6 5.8578 -1.9940 3.9132 10 7 5.0067 -2.5797 4.7286 11 14 7.6885 -2.0423 4.2819 12 1 8.1995 -0.6563 4.4341 13 1 7.9203 -2.7959 5.5403 14 1 8.4009 -2.7127 3.1646 15 7 2.0182 -0.6906 -1.1963 16 6 2.1469 -0.0180 -2.3572 17 8 1.8581 1.1586 -2.4116 18 6 2.6498 -0.7282 -3.5876 19 6 2.6997 0.2400 -4.7413 20 7 1.6884 0.3961 -5.5223 21 16 2.0788 1.5419 -6.7072 22 6 3.7192 1.8533 -6.1346 23 6 4.7410 2.6868 -6.5672 24 6 5.9320 2.7050 -5.8960 25 6 6.1196 1.8917 -4.7849 26 6 5.1332 1.0656 -4.3427 27 6 3.8903 1.0219 -5.0112 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.6055 -0.2619 2.1369 32 1 1.7516 -1.7716 1.2054 33 1 3.9995 -1.0729 0.4258 34 1 3.8532 0.4368 1.3573 35 1 3.4257 -1.7347 3.1112 36 1 5.3300 -3.0367 5.5207 37 1 2.2490 -1.6317 -1.1528 38 1 1.9775 -1.5505 -3.8328 39 1 3.6491 -1.1200 -3.3981 40 1 4.5962 3.3182 -7.4314 41 1 6.7291 3.3524 -6.2306 42 1 7.0652 1.9152 -4.2638 43 1 5.3013 0.4419 -3.4772 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716196401.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:23 Heat of formation + Delta-G solvation = -7.681396 kcal Electronic energy + Delta-G solvation = -25195.973772 eV Core-core repulsion = 21559.251297 eV Total energy + Delta-G solvation = -3636.722475 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.41270 -40.46507 -38.14374 -37.48833 -36.05894 -33.68905 -32.73318 -32.11438 -31.48738 -30.56740 -29.37305 -25.88680 -24.76976 -23.94998 -23.36586 -22.57742 -21.62827 -20.89612 -19.55957 -19.18444 -18.23772 -17.42331 -17.32647 -16.68913 -16.46524 -16.10469 -16.06564 -15.59105 -15.45598 -15.22039 -15.09402 -14.88250 -14.64722 -14.39560 -14.21139 -13.75266 -13.28157 -13.11482 -13.07448 -12.87815 -12.86112 -12.83501 -12.62136 -12.35111 -12.28974 -11.97040 -11.91510 -11.80243 -11.63724 -11.61606 -11.08385 -10.90813 -10.78247 -10.09546 -9.98515 -8.98095 -8.95119 -7.93510 -5.22317 -0.55003 0.17571 0.35533 0.69278 0.99967 1.49661 1.52421 1.58523 1.59582 2.23399 2.57867 2.64502 3.17858 3.40487 3.43670 3.62462 3.77677 3.97549 4.04739 4.06976 4.18473 4.21170 4.29251 4.34894 4.41316 4.46442 4.57466 4.63044 4.68363 4.80062 4.85640 4.90415 4.99533 5.01954 5.23835 5.24302 5.28304 5.35323 5.41168 5.51243 5.52298 5.56872 5.81381 6.28885 6.54291 7.22835 7.35551 8.11563 8.34586 9.29774 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.002675 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.486656 B =10463.885029 C =12257.562823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.067 0.933 4 C -0.118 4.118 5 C 0.154 3.846 6 N -0.747 5.747 7 C -0.246 4.246 8 H 0.075 0.925 9 C -0.075 4.075 10 N -0.969 5.969 11 Si 0.972 3.028 12 H -0.280 1.280 13 H -0.296 1.296 14 H -0.274 1.274 15 N -0.707 5.707 16 C 0.523 3.477 17 O -0.579 6.579 18 C -0.079 4.079 19 C 0.179 3.821 20 N -0.465 5.465 21 S 0.163 5.837 22 C -0.149 4.149 23 C -0.092 4.092 24 C -0.072 4.072 25 C -0.124 4.124 26 C -0.059 4.059 27 C -0.147 4.147 28 H 0.044 0.956 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.031 0.969 34 H 0.006 0.994 35 H 0.375 0.625 36 H 0.251 0.749 37 H 0.416 0.584 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.171 0.829 42 H 0.160 0.840 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.910 6.465 -24.188 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.049 3.951 3 H 0.086 0.914 4 C -0.157 4.157 5 C 0.028 3.972 6 N -0.389 5.389 7 C -0.378 4.378 8 H 0.093 0.907 9 C -0.267 4.267 10 N -0.620 5.620 11 Si 0.801 3.199 12 H -0.206 1.206 13 H -0.223 1.223 14 H -0.200 1.200 15 N -0.360 5.360 16 C 0.308 3.692 17 O -0.458 6.458 18 C -0.123 4.123 19 C -0.012 4.012 20 N -0.276 5.276 21 S 0.318 5.682 22 C -0.269 4.269 23 C -0.115 4.115 24 C -0.094 4.094 25 C -0.144 4.144 26 C -0.082 4.082 27 C -0.158 4.158 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.049 0.951 34 H 0.024 0.976 35 H 0.206 0.794 36 H 0.060 0.940 37 H 0.253 0.747 38 H 0.158 0.842 39 H 0.169 0.831 40 H 0.172 0.828 41 H 0.188 0.812 42 H 0.177 0.823 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -4.033 7.347 -25.499 26.841 hybrid contribution 1.859 -0.663 1.742 2.633 sum -2.174 6.684 -23.757 24.775 Atomic orbital electron populations 1.22083 0.94072 1.02957 1.02096 1.20778 0.94499 0.96421 0.83384 0.91449 1.21890 0.94884 1.01777 0.97112 1.20768 0.93219 0.94183 0.89023 1.42578 1.04491 1.65326 1.26535 1.19585 0.85301 1.27556 1.05382 0.90737 1.25558 1.01942 1.01303 0.97884 1.69801 1.34699 1.41940 1.15569 0.85238 0.80203 0.77544 0.76952 1.20616 1.22269 1.19998 1.45973 1.66485 1.14802 1.08726 1.20516 0.77084 0.86753 0.84827 1.90725 1.51659 1.17904 1.85555 1.20649 1.07725 0.96815 0.87118 1.22201 0.88217 0.95589 0.95147 1.75642 1.26407 1.17031 1.08543 1.84607 1.06717 1.41853 1.34975 1.23723 1.00198 1.02650 1.00302 1.20387 0.91536 0.98017 1.01571 1.21534 0.96912 0.97242 0.93729 1.21229 1.00168 0.95666 0.97304 1.21011 0.90065 0.98581 0.98496 1.20326 0.96652 1.00302 0.98567 0.93696 0.90946 0.90745 0.90470 0.90085 0.95107 0.97622 0.79351 0.93987 0.74669 0.84156 0.83116 0.82789 0.81163 0.82281 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.48 71.98 0.68 -2.73 16 2 C 0.15 3.87 2.57 44.99 0.12 3.99 16 3 H 0.07 2.02 7.58 -2.39 -0.02 2.00 16 4 C -0.12 -3.33 4.87 30.59 0.15 -3.18 16 5 C 0.15 5.73 6.15 86.38 0.53 6.26 16 6 N -0.75 -36.45 5.60 -343.46 -1.92 -38.38 16 7 C -0.25 -13.40 9.99 84.03 0.84 -12.56 16 8 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 9 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 10 N -0.97 -58.11 13.06 21.65 0.28 -57.82 16 11 Si 0.97 44.86 29.55 68.60 2.03 46.89 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 13 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 14 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 15 N -0.71 -15.26 4.53 -442.52 -2.00 -17.27 16 16 C 0.52 12.91 7.79 87.66 0.68 13.59 16 17 O -0.58 -19.76 15.70 -3.03 -0.05 -19.81 16 18 C -0.08 -1.44 5.97 29.10 0.17 -1.26 16 19 C 0.18 4.39 5.37 44.74 0.24 4.63 16 20 N -0.46 -12.94 11.84 -46.34 -0.55 -13.49 16 21 S 0.16 3.99 23.86 -56.49 -1.35 2.65 16 22 C -0.15 -3.33 6.71 23.03 0.15 -3.18 16 23 C -0.09 -1.47 10.02 22.04 0.22 -1.25 16 24 C -0.07 -0.88 10.01 22.09 0.22 -0.66 16 25 C -0.12 -1.74 9.92 21.94 0.22 -1.53 16 26 C -0.06 -1.10 9.72 22.49 0.22 -0.88 16 27 C -0.15 -3.42 6.04 -20.20 -0.12 -3.54 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 30 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.03 1.08 7.75 -2.39 -0.02 1.06 16 34 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 35 H 0.37 19.38 7.67 -92.70 -0.71 18.67 16 36 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.42 6.86 8.60 -92.71 -0.80 6.06 16 38 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.15 1.76 7.55 -2.39 -0.02 1.74 16 40 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 42 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 43 H 0.14 2.21 7.65 -2.91 -0.02 2.19 16 Total: -1.00 -76.58 379.68 0.76 -75.81 By element: Atomic # 1 Polarization: 27.91 SS G_CDS: -0.46 Total: 27.44 kcal Atomic # 6 Polarization: -10.82 SS G_CDS: 4.79 Total: -6.03 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -4.19 Total: -126.96 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: -0.05 Total: -19.81 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -1.35 Total: 2.65 kcal Total: -76.58 0.76 -75.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716196401.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.129 kcal (2) G-P(sol) polarization free energy of solvation -76.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds