Wall clock time and date at job start Tue Mar 31 2020 16:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46968 * 268.18514 * 3 2 1 5 5 C 1.34772 * 119.99878 * 277.52437 * 4 3 2 6 6 O 1.21689 * 120.00184 * 177.71556 * 5 4 3 7 7 C 1.46685 * 120.00162 * 357.71978 * 5 4 3 8 8 C 1.35665 * 126.13097 * 187.73353 * 7 5 4 9 9 N 1.30943 * 114.19033 * 179.97438 * 8 7 5 10 10 C 1.29429 * 117.36160 * 359.97438 * 9 8 7 11 11 C 1.50705 * 124.80083 * 180.02562 * 10 9 8 12 12 S 1.70953 * 110.39215 * 359.72597 * 10 9 8 13 13 C 1.46502 * 120.00399 * 97.52567 * 4 3 2 14 14 C 1.53040 * 109.46249 * 240.00234 * 13 4 3 15 15 C 1.53186 * 109.31126 * 178.61225 * 14 13 4 16 16 N 1.46927 * 108.89604 * 54.56130 * 15 14 13 17 17 C 1.36939 * 120.62996 * 126.46423 * 16 15 14 18 18 H 1.08004 * 119.99785 * 324.69197 * 17 16 15 19 19 C 1.38811 * 120.00206 * 144.69203 * 17 16 15 20 20 N 1.31622 * 119.99406 * 4.23048 * 19 17 16 21 21 Si 1.86795 * 120.00030 * 184.23391 * 19 17 16 22 22 H 1.48501 * 109.47076 * 60.00447 * 21 19 17 23 23 H 1.48505 * 109.46838 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47217 * 299.99698 * 21 19 17 25 25 C 1.46954 * 118.71646 * 306.64128 * 16 15 14 26 26 C 1.53035 * 109.46144 * 119.92926 * 13 4 3 27 27 H 4.40635 * 5.51362 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47566 * 148.18624 * 3 2 1 29 29 H 1.09007 * 109.46904 * 28.18124 * 3 2 1 30 30 H 1.07995 * 122.90377 * 0.02562 * 8 7 5 31 31 H 1.08995 * 109.47113 * 89.97467 * 11 10 9 32 32 H 1.09001 * 109.46872 * 209.97916 * 11 10 9 33 33 H 1.08996 * 109.47237 * 329.97157 * 11 10 9 34 34 H 1.09007 * 109.44665 * 359.96280 * 13 4 3 35 35 H 1.08998 * 109.49681 * 58.66145 * 14 13 4 36 36 H 1.08996 * 109.49577 * 298.56440 * 14 13 4 37 37 H 1.09005 * 109.58480 * 174.42344 * 15 14 13 38 38 H 1.09008 * 109.58783 * 294.69917 * 15 14 13 39 39 H 0.97003 * 119.99559 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.46600 * 293.57165 * 25 16 15 41 41 H 1.08996 * 109.71412 * 173.28219 * 25 16 15 42 42 H 1.09004 * 109.49835 * 301.34006 * 26 13 4 43 43 H 1.09001 * 109.49708 * 61.40408 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0446 1.3806 5 6 3.2142 1.2229 2.0298 6 8 3.5803 1.2548 3.1899 7 6 2.8600 2.4670 1.3381 8 6 3.0323 3.7250 1.8160 9 7 2.6331 4.6682 1.0003 10 6 2.1346 4.3003 -0.1361 11 6 1.6256 5.2416 -1.1972 12 16 2.1429 2.5957 -0.2663 13 6 3.5357 -1.1922 2.0554 14 6 2.6709 -1.3970 3.3013 15 6 3.0700 -2.7085 3.9850 16 7 4.5149 -2.6862 4.2504 17 6 4.9964 -2.9206 5.5108 18 1 4.4446 -2.5750 6.3725 19 6 6.1936 -3.6022 5.6808 20 7 6.9075 -3.9501 4.6312 21 14 6.7913 -4.0257 7.3991 22 1 5.7884 -4.8887 8.0734 23 1 8.0851 -4.7491 7.3088 24 1 6.9755 -2.7768 8.1810 25 6 5.4329 -2.4038 3.1382 26 6 5.0073 -1.0956 2.4640 27 1 -1.0500 0.0002 -0.0001 28 1 3.0090 0.8740 -0.5417 29 1 3.0097 -0.9051 -0.4854 30 1 3.4625 3.9306 2.7850 31 1 2.4398 5.5006 -1.8740 32 1 0.8262 4.7580 -1.7587 33 1 1.2425 6.1469 -0.7264 34 1 3.4015 -2.0354 1.3777 35 1 1.6210 -1.4424 3.0120 36 1 2.8233 -0.5665 3.9905 37 1 2.5273 -2.8106 4.9248 38 1 2.8313 -3.5483 3.3322 39 1 7.7443 -4.4261 4.7500 40 1 5.3892 -3.2185 2.4153 41 1 6.4502 -2.3055 3.5170 42 1 5.6203 -0.9264 1.5787 43 1 5.1379 -0.2675 3.1606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716804043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:36 Heat of formation + Delta-G solvation = 104.443428 kcal Electronic energy + Delta-G solvation = -26601.335105 eV Core-core repulsion = 22969.474727 eV Total energy + Delta-G solvation = -3631.860378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.45354 -39.57589 -36.98534 -35.96334 -33.43428 -32.49851 -32.06087 -30.25512 -29.63968 -28.69274 -27.17006 -25.31318 -24.23591 -22.81426 -22.06880 -20.93460 -19.70237 -19.10815 -18.52345 -17.94786 -16.86155 -16.66109 -15.95099 -15.59697 -15.12965 -14.86992 -14.67099 -14.23134 -13.88629 -13.74752 -13.68514 -13.52281 -13.32892 -12.98891 -12.86783 -12.62185 -12.54676 -12.29738 -11.70226 -11.47285 -11.17667 -10.86502 -10.76510 -10.74077 -10.72076 -10.35076 -10.11945 -10.03234 -9.84301 -9.74745 -9.63967 -9.39139 -9.34698 -8.99456 -8.56941 -8.34800 -6.49313 -5.73090 -3.24948 0.11916 1.01993 1.41299 2.26736 2.38070 2.61749 3.17087 3.26849 3.43344 3.47173 3.49140 3.88796 4.09585 4.46369 4.53673 4.73751 4.81817 5.05426 5.09667 5.11023 5.17608 5.39141 5.46003 5.50305 5.60418 5.64173 5.69883 5.83217 5.96418 6.08558 6.29046 6.38115 6.57822 6.61236 6.78598 6.86191 6.99113 7.09676 7.31445 7.36798 7.48886 7.56711 7.84698 7.85846 8.19269 8.59476 9.30716 9.89507 10.49043 11.33421 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.003083 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.952947 B = 9080.631096 C = 9683.115496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.214 4.214 3 C 0.207 3.793 4 N -0.602 5.602 5 C 0.594 3.406 6 O -0.499 6.499 7 C -0.293 4.293 8 C 0.118 3.882 9 N -0.484 5.484 10 C 0.018 3.982 11 C -0.080 4.080 12 S 0.195 5.805 13 C 0.162 3.838 14 C -0.148 4.148 15 C 0.152 3.848 16 N -0.591 5.591 17 C -0.249 4.249 18 H 0.062 0.938 19 C 0.008 3.992 20 N -0.907 5.907 21 Si 0.904 3.096 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.172 3.828 26 C -0.156 4.156 27 H 0.219 0.781 28 H 0.096 0.904 29 H 0.120 0.880 30 H 0.187 0.813 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.254 0.746 40 H 0.013 0.987 41 H 0.103 0.897 42 H 0.045 0.955 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.247 13.145 -17.098 24.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.217 4.217 3 C 0.082 3.918 4 N -0.334 5.334 5 C 0.380 3.620 6 O -0.374 6.374 7 C -0.416 4.416 8 C -0.039 4.039 9 N -0.199 5.199 10 C -0.255 4.255 11 C -0.140 4.140 12 S 0.453 5.547 13 C 0.061 3.939 14 C -0.188 4.188 15 C 0.025 3.975 16 N -0.314 5.314 17 C -0.379 4.379 18 H 0.080 0.920 19 C -0.190 4.190 20 N -0.552 5.552 21 Si 0.734 3.266 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.046 3.954 26 C -0.196 4.196 27 H 0.236 0.764 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.204 0.796 31 H 0.106 0.894 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.032 0.968 41 H 0.121 0.879 42 H 0.064 0.936 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.136 12.961 -17.154 24.688 hybrid contribution 0.405 -0.009 1.528 1.581 sum -11.731 12.952 -15.626 23.442 Atomic orbital electron populations 1.24911 0.95787 1.00120 0.97714 1.23305 0.94789 1.01107 1.02453 1.18667 0.84440 1.03899 0.84749 1.48249 1.64307 1.07934 1.12874 1.16772 0.77974 0.81446 0.85839 1.90878 1.45677 1.85709 1.15162 1.25951 1.15796 0.99808 1.00092 1.22162 0.96192 0.85495 1.00018 1.66298 1.13797 1.36899 1.02867 1.28008 1.00136 1.00210 0.97170 1.20472 1.01400 0.97676 0.94436 1.84482 1.55406 1.01398 1.13370 1.21294 0.96371 0.82474 0.93741 1.22475 0.96715 1.02189 0.97391 1.20851 0.86972 0.92383 0.97329 1.43977 0.99294 1.81703 1.06419 1.19120 1.05900 1.28934 0.83945 0.91991 1.25295 0.98933 0.97706 0.97103 1.69872 1.14745 1.42704 1.27857 0.86344 0.77657 0.78361 0.84264 1.20904 1.21618 1.20911 1.20941 0.97067 0.89136 0.88257 1.22722 0.92601 1.03970 1.00327 0.76393 0.88688 0.86249 0.79622 0.89414 0.90055 0.89326 0.90121 0.93621 0.89869 0.92624 0.96655 0.93543 0.96841 0.87897 0.93583 0.90439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.55 19.25 29.55 0.57 -0.98 16 2 C -0.21 -2.30 11.12 -37.12 -0.41 -2.71 16 3 C 0.21 2.26 5.52 -6.83 -0.04 2.22 16 4 N -0.60 -8.98 2.41 -170.90 -0.41 -9.39 16 5 C 0.59 9.84 6.98 -12.85 -0.09 9.75 16 6 O -0.50 -10.15 13.12 5.20 0.07 -10.09 16 7 C -0.29 -4.03 6.24 -37.09 -0.23 -4.26 16 8 C 0.12 1.62 11.10 -18.85 -0.21 1.41 16 9 N -0.48 -6.21 10.51 -11.50 -0.12 -6.33 16 10 C 0.02 0.18 7.39 -13.29 -0.10 0.09 16 11 C -0.08 -0.49 10.46 36.01 0.38 -0.11 16 12 S 0.20 1.92 16.47 -107.50 -1.77 0.15 16 13 C 0.16 2.83 2.51 -67.89 -0.17 2.66 16 14 C -0.15 -2.84 5.27 -26.61 -0.14 -2.98 16 15 C 0.15 3.32 6.51 -3.71 -0.02 3.29 16 16 N -0.59 -15.31 3.01 -172.29 -0.52 -15.83 16 17 C -0.25 -7.06 9.55 -15.06 -0.14 -7.20 16 18 H 0.06 1.74 7.83 -52.48 -0.41 1.33 16 19 C 0.01 0.22 5.32 -17.43 -0.09 0.13 16 20 N -0.91 -26.41 10.62 55.49 0.59 -25.83 16 21 Si 0.90 22.17 29.56 -169.99 -5.02 17.15 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.17 4.20 5.26 -3.69 -0.02 4.18 16 26 C -0.16 -3.17 5.27 -26.61 -0.14 -3.31 16 27 H 0.22 1.29 7.80 -54.09 -0.42 0.87 16 28 H 0.10 0.91 4.45 -22.52 -0.10 0.81 16 29 H 0.12 1.07 7.77 -51.93 -0.40 0.66 16 30 H 0.19 2.47 8.06 -52.49 -0.42 2.04 16 31 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.30 7.70 -51.92 -0.40 0.90 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.83 6.13 -51.93 -0.32 1.51 16 37 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 38 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.10 2.85 5.93 -51.93 -0.31 2.54 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.08 1.79 6.29 -51.93 -0.33 1.46 16 LS Contribution 359.94 15.07 5.42 5.42 Total: -1.00 -33.61 359.94 -8.25 -41.86 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -5.62 Total: 0.73 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: -0.86 Total: 2.16 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.46 Total: -57.37 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -1.77 Total: 0.15 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.61 -8.25 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716804043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.301 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds