Wall clock time and date at job start Tue Mar 31 2020 16:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46968 * 268.18514 * 3 2 1 5 5 C 1.34772 * 119.99878 * 277.52437 * 4 3 2 6 6 O 1.21689 * 120.00184 * 177.71556 * 5 4 3 7 7 C 1.46685 * 120.00162 * 357.71978 * 5 4 3 8 8 C 1.35665 * 126.13097 * 187.73353 * 7 5 4 9 9 N 1.30943 * 114.19033 * 179.97438 * 8 7 5 10 10 C 1.29429 * 117.36160 * 359.97438 * 9 8 7 11 11 C 1.50705 * 124.80083 * 180.02562 * 10 9 8 12 12 S 1.70953 * 110.39215 * 359.72597 * 10 9 8 13 13 C 1.46502 * 120.00399 * 97.52567 * 4 3 2 14 14 C 1.53040 * 109.46249 * 240.00234 * 13 4 3 15 15 C 1.53186 * 109.31126 * 178.61225 * 14 13 4 16 16 N 1.46927 * 108.89604 * 54.56130 * 15 14 13 17 17 C 1.36939 * 120.62996 * 126.46423 * 16 15 14 18 18 H 1.08004 * 119.99785 * 324.69197 * 17 16 15 19 19 C 1.38811 * 120.00206 * 144.69203 * 17 16 15 20 20 N 1.31622 * 119.99406 * 4.23048 * 19 17 16 21 21 Si 1.86795 * 120.00030 * 184.23391 * 19 17 16 22 22 H 1.48501 * 109.47076 * 60.00447 * 21 19 17 23 23 H 1.48505 * 109.46838 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47217 * 299.99698 * 21 19 17 25 25 C 1.46954 * 118.71646 * 306.64128 * 16 15 14 26 26 C 1.53035 * 109.46144 * 119.92926 * 13 4 3 27 27 H 4.40635 * 5.51362 * 179.97438 * 4 1 2 28 28 H 1.08994 * 109.47566 * 148.18624 * 3 2 1 29 29 H 1.09007 * 109.46904 * 28.18124 * 3 2 1 30 30 H 1.07995 * 122.90377 * 0.02562 * 8 7 5 31 31 H 1.08995 * 109.47113 * 89.97467 * 11 10 9 32 32 H 1.09001 * 109.46872 * 209.97916 * 11 10 9 33 33 H 1.08996 * 109.47237 * 329.97157 * 11 10 9 34 34 H 1.09007 * 109.44665 * 359.96280 * 13 4 3 35 35 H 1.08998 * 109.49681 * 58.66145 * 14 13 4 36 36 H 1.08996 * 109.49577 * 298.56440 * 14 13 4 37 37 H 1.09005 * 109.58480 * 174.42344 * 15 14 13 38 38 H 1.09008 * 109.58783 * 294.69917 * 15 14 13 39 39 H 0.97003 * 119.99559 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.46600 * 293.57165 * 25 16 15 41 41 H 1.08996 * 109.71412 * 173.28219 * 25 16 15 42 42 H 1.09004 * 109.49835 * 301.34006 * 26 13 4 43 43 H 1.09001 * 109.49708 * 61.40408 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.0446 1.3806 5 6 3.2142 1.2229 2.0298 6 8 3.5803 1.2548 3.1899 7 6 2.8600 2.4670 1.3381 8 6 3.0323 3.7250 1.8160 9 7 2.6331 4.6682 1.0003 10 6 2.1346 4.3003 -0.1361 11 6 1.6256 5.2416 -1.1972 12 16 2.1429 2.5957 -0.2663 13 6 3.5357 -1.1922 2.0554 14 6 2.6709 -1.3970 3.3013 15 6 3.0700 -2.7085 3.9850 16 7 4.5149 -2.6862 4.2504 17 6 4.9964 -2.9206 5.5108 18 1 4.4446 -2.5750 6.3725 19 6 6.1936 -3.6022 5.6808 20 7 6.9075 -3.9501 4.6312 21 14 6.7913 -4.0257 7.3991 22 1 5.7884 -4.8887 8.0734 23 1 8.0851 -4.7491 7.3088 24 1 6.9755 -2.7768 8.1810 25 6 5.4329 -2.4038 3.1382 26 6 5.0073 -1.0956 2.4640 27 1 -1.0500 0.0002 -0.0001 28 1 3.0090 0.8740 -0.5417 29 1 3.0097 -0.9051 -0.4854 30 1 3.4625 3.9306 2.7850 31 1 2.4398 5.5006 -1.8740 32 1 0.8262 4.7580 -1.7587 33 1 1.2425 6.1469 -0.7264 34 1 3.4015 -2.0354 1.3777 35 1 1.6210 -1.4424 3.0120 36 1 2.8233 -0.5665 3.9905 37 1 2.5273 -2.8106 4.9248 38 1 2.8313 -3.5483 3.3322 39 1 7.7443 -4.4261 4.7500 40 1 5.3892 -3.2185 2.4153 41 1 6.4502 -2.3055 3.5170 42 1 5.6203 -0.9264 1.5787 43 1 5.1379 -0.2675 3.1606 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716804043.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:35 Heat of formation + Delta-G solvation = 83.292301 kcal Electronic energy + Delta-G solvation = -26602.252287 eV Core-core repulsion = 22969.474727 eV Total energy + Delta-G solvation = -3632.777559 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.65878 -40.59063 -38.64772 -37.20235 -34.97546 -33.52284 -33.21792 -31.88449 -31.39735 -29.68100 -28.25916 -26.94129 -25.35832 -24.23465 -23.82809 -22.32359 -21.14137 -20.13691 -19.57685 -19.02081 -18.56305 -17.80523 -17.16723 -16.92577 -16.50100 -16.16318 -15.73252 -15.49233 -15.35386 -15.27193 -14.81675 -14.74034 -14.52756 -14.38080 -14.32897 -13.95632 -13.43719 -13.28413 -13.21355 -12.91158 -12.77280 -12.64605 -12.56727 -12.24870 -12.00099 -11.87789 -11.66627 -11.55371 -11.50200 -11.31043 -10.89545 -10.57503 -10.49148 -10.34671 -10.02313 -9.66542 -8.55661 -7.87171 -5.42519 -0.80931 0.14692 0.54035 1.31376 1.39251 1.45064 1.47554 1.53948 1.87579 2.05542 2.27652 2.49243 3.09772 3.27251 3.35025 3.46661 3.70095 3.94616 3.97715 4.01853 4.06427 4.21748 4.28322 4.38176 4.50641 4.61245 4.67275 4.67644 4.73778 4.85479 4.92897 4.95944 5.01861 5.05855 5.14624 5.17134 5.39338 5.52085 5.57803 5.64482 5.81341 6.18925 6.46151 6.60191 6.64279 6.96798 7.17893 7.85340 8.38529 9.16527 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.022631 B = 0.003083 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.952947 B = 9080.631096 C = 9683.115496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.252 4.252 3 C 0.203 3.797 4 N -0.598 5.598 5 C 0.590 3.410 6 O -0.552 6.552 7 C -0.329 4.329 8 C 0.114 3.886 9 N -0.512 5.512 10 C 0.021 3.979 11 C -0.083 4.083 12 S 0.267 5.733 13 C 0.172 3.828 14 C -0.133 4.133 15 C 0.151 3.849 16 N -0.612 5.612 17 C -0.269 4.269 18 H 0.055 0.945 19 C -0.042 4.042 20 N -0.930 5.930 21 Si 0.968 3.032 22 H -0.275 1.275 23 H -0.288 1.288 24 H -0.282 1.282 25 C 0.180 3.820 26 C -0.141 4.141 27 H 0.249 0.751 28 H 0.108 0.892 29 H 0.144 0.856 30 H 0.174 0.826 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.029 0.971 39 H 0.252 0.748 40 H 0.008 0.992 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 13.603 -19.911 28.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.255 4.255 3 C 0.080 3.920 4 N -0.329 5.329 5 C 0.378 3.622 6 O -0.431 6.431 7 C -0.453 4.453 8 C -0.044 4.044 9 N -0.228 5.228 10 C -0.251 4.251 11 C -0.143 4.143 12 S 0.527 5.473 13 C 0.070 3.930 14 C -0.173 4.173 15 C 0.024 3.976 16 N -0.336 5.336 17 C -0.399 4.399 18 H 0.073 0.927 19 C -0.237 4.237 20 N -0.575 5.575 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.214 1.214 24 H -0.208 1.208 25 C 0.054 3.946 26 C -0.181 4.181 27 H 0.265 0.735 28 H 0.125 0.875 29 H 0.161 0.839 30 H 0.191 0.809 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.026 0.974 41 H 0.083 0.917 42 H 0.085 0.915 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.382 13.423 -20.032 28.077 hybrid contribution 0.985 -0.069 2.292 2.495 sum -13.397 13.354 -17.741 25.933 Atomic orbital electron populations 1.25715 0.96579 0.98369 0.95576 1.23333 0.95033 1.02798 1.04293 1.18926 0.85113 1.05729 0.82234 1.48110 1.63940 1.06427 1.14375 1.17165 0.77031 0.82607 0.85389 1.90851 1.48080 1.86630 1.17578 1.25710 1.18224 0.98359 1.03011 1.22128 0.96127 0.86078 1.00076 1.66372 1.15531 1.36865 1.04041 1.28824 0.97816 1.01626 0.96869 1.20745 1.02776 0.97161 0.93613 1.84061 1.53508 1.00255 1.09483 1.20991 0.93729 0.84499 0.93817 1.22247 0.98363 0.99299 0.97426 1.20954 0.84709 0.94184 0.97713 1.44221 1.01098 1.82271 1.05976 1.19362 1.06371 1.29143 0.85015 0.92748 1.26004 0.99123 0.97844 1.00761 1.70052 1.14827 1.43144 1.29521 0.85344 0.77153 0.77985 0.79938 1.20026 1.21358 1.20779 1.20675 0.95207 0.90819 0.87871 1.22431 0.95487 1.00259 0.99960 0.73476 0.87497 0.83885 0.80902 0.87511 0.87301 0.89047 0.87623 0.91217 0.93026 0.93230 0.95282 0.93870 0.97369 0.91750 0.91524 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 19.25 74.32 1.43 -0.66 16 2 C -0.25 -4.54 11.12 31.12 0.35 -4.19 16 3 C 0.20 3.84 5.52 84.57 0.47 4.31 16 4 N -0.60 -17.19 2.41 -812.84 -1.96 -19.14 16 5 C 0.59 19.84 6.98 86.45 0.60 20.44 16 6 O -0.55 -23.83 13.12 -4.31 -0.06 -23.88 16 7 C -0.33 -8.97 6.24 23.88 0.15 -8.82 16 8 C 0.11 3.21 11.10 84.23 0.93 4.15 16 9 N -0.51 -12.76 10.51 -190.30 -2.00 -14.76 16 10 C 0.02 0.37 7.39 88.46 0.65 1.03 16 11 C -0.08 -0.70 10.46 71.24 0.75 0.04 16 12 S 0.27 4.51 16.47 -56.49 -0.93 3.58 16 13 C 0.17 5.86 2.51 45.02 0.11 5.98 16 14 C -0.13 -5.13 5.27 30.67 0.16 -4.97 16 15 C 0.15 6.63 6.51 86.36 0.56 7.19 16 16 N -0.61 -32.66 3.01 -699.00 -2.10 -34.77 16 17 C -0.27 -15.74 9.55 84.03 0.80 -14.93 16 18 H 0.05 3.19 7.83 -2.91 -0.02 3.16 16 19 C -0.04 -2.42 5.32 84.86 0.45 -1.96 16 20 N -0.93 -55.72 10.62 21.65 0.23 -55.49 16 21 Si 0.97 46.60 29.56 68.60 2.03 48.63 16 22 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 25 C 0.18 9.10 5.26 86.36 0.45 9.55 16 26 C -0.14 -5.88 5.27 30.67 0.16 -5.72 16 27 H 0.25 1.73 7.80 -4.42 -0.03 1.69 16 28 H 0.11 1.72 4.45 -21.09 -0.09 1.63 16 29 H 0.14 2.02 7.77 -2.38 -0.02 2.00 16 30 H 0.17 5.04 8.06 -2.91 -0.02 5.01 16 31 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.11 3.14 7.70 -2.38 -0.02 3.12 16 35 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.05 2.35 6.13 -2.39 -0.01 2.34 16 37 H 0.05 2.19 7.93 -2.38 -0.02 2.17 16 38 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 41 H 0.06 3.74 5.93 -2.39 -0.01 3.73 16 42 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 43 H 0.04 2.20 6.29 -2.39 -0.02 2.18 16 Total: -1.00 -77.43 359.94 4.18 -73.24 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 0.94 Total: 11.16 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 8.04 Total: 11.42 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -5.83 Total: -124.15 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Atomic # 16 Polarization: 4.51 SS G_CDS: -0.93 Total: 3.58 kcal Total: -77.43 4.18 -73.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716804043.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.534 kcal (2) G-P(sol) polarization free energy of solvation -77.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds