Wall clock time and date at job start Tue Mar 31 2020 17:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46868 * 277.80009 * 3 2 1 5 5 C 1.34769 * 120.00112 * 269.99930 * 4 3 2 6 6 O 1.21285 * 120.00115 * 180.02562 * 5 4 3 7 7 C 1.50694 * 120.00374 * 0.02562 * 5 4 3 8 8 C 1.50701 * 109.47715 * 179.97438 * 7 5 4 9 9 C 1.33636 * 126.03446 * 89.99615 * 8 7 5 10 10 N 1.31788 * 114.49702 * 180.02562 * 9 8 7 11 11 C 1.29022 * 117.12474 * 0.02562 * 10 9 8 12 12 S 1.70979 * 110.16838 * 359.71833 * 11 10 9 13 13 C 1.46500 * 119.99418 * 90.00245 * 4 3 2 14 14 C 1.53349 * 109.42211 * 60.12667 * 13 4 3 15 15 C 1.53193 * 109.14947 * 178.67019 * 14 13 4 16 16 N 1.46932 * 108.89365 * 54.58000 * 15 14 13 17 17 C 1.36929 * 120.62923 * 126.33970 * 16 15 14 18 18 H 1.07994 * 120.00472 * 332.28422 * 17 16 15 19 19 C 1.38823 * 119.99710 * 152.28799 * 17 16 15 20 20 N 1.31617 * 119.99601 * 342.59309 * 19 17 16 21 21 Si 1.86793 * 119.99892 * 162.59877 * 19 17 16 22 22 H 1.48502 * 109.47323 * 94.34576 * 21 19 17 23 23 H 1.48497 * 109.47157 * 214.34797 * 21 19 17 24 24 H 1.48496 * 109.47300 * 334.34614 * 21 19 17 25 25 C 1.46927 * 118.73576 * 306.31982 * 16 15 14 26 26 C 1.53038 * 109.46224 * 299.99271 * 13 4 3 27 27 H 4.40643 * 5.51368 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.46975 * 157.80212 * 3 2 1 29 29 H 1.09001 * 109.46746 * 37.79878 * 3 2 1 30 30 H 1.09004 * 109.46992 * 299.99910 * 7 5 4 31 31 H 1.08998 * 109.47054 * 59.99724 * 7 5 4 32 32 H 1.08002 * 122.75354 * 0.02562 * 9 8 7 33 33 H 1.08000 * 124.91541 * 180.02562 * 11 10 9 34 34 H 1.09005 * 109.45754 * 180.02562 * 13 4 3 35 35 H 1.08996 * 109.68615 * 58.70782 * 14 13 4 36 36 H 1.08996 * 109.47201 * 298.50889 * 14 13 4 37 37 H 1.08995 * 109.58815 * 294.71872 * 15 14 13 38 38 H 1.09000 * 109.58606 * 174.43227 * 15 14 13 39 39 H 0.97000 * 119.99465 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.58712 * 173.40018 * 25 16 15 41 41 H 1.09003 * 109.58223 * 293.67509 * 25 16 15 42 42 H 1.09002 * 109.49898 * 61.44070 * 26 13 4 43 43 H 1.09001 * 109.50239 * 301.34157 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 -0.1866 1.3685 5 6 3.3586 0.8836 2.1563 6 8 3.7633 0.7286 3.2891 7 6 3.1063 2.2729 1.6299 8 6 3.4318 3.2826 2.7003 9 6 4.6204 3.8591 2.9019 10 7 4.6509 4.7116 3.9064 11 6 3.5543 4.8860 4.5635 12 16 2.3108 3.9160 3.9031 13 6 3.3792 -1.5372 1.8804 14 6 4.4389 -2.2271 1.0128 15 6 4.7141 -3.6261 1.5732 16 7 3.4436 -4.3574 1.6721 17 6 3.3004 -5.5890 1.0911 18 1 3.8874 -5.8477 0.2223 19 6 2.4008 -6.5051 1.6189 20 7 1.9435 -6.3479 2.8431 21 14 1.8393 -7.9607 0.5918 22 1 2.6920 -9.1383 0.8941 23 1 0.4249 -8.2779 0.9142 24 1 1.9545 -7.6232 -0.8498 25 6 2.3298 -3.7421 2.4068 26 6 2.0781 -2.3419 1.8387 27 1 -1.0500 0.0002 0.0000 28 1 3.0089 0.9523 -0.3882 29 1 3.0097 -0.8112 -0.6299 30 1 3.7362 2.4511 0.7583 31 1 2.0582 2.3694 1.3467 32 1 5.4852 3.6439 2.2918 33 1 3.4374 5.5523 5.4054 34 1 3.7359 -1.4767 2.9086 35 1 5.3593 -1.6433 1.0239 36 1 4.0727 -2.3106 -0.0104 37 1 5.1650 -3.5415 2.5619 38 1 5.3919 -4.1597 0.9069 39 1 1.3152 -6.9882 3.2120 40 1 1.4335 -4.3510 2.2887 41 1 2.5853 -3.6694 3.4639 42 1 1.7340 -2.4241 0.8077 43 1 1.3191 -1.8377 2.4369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716807155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:52 Heat of formation + Delta-G solvation = 96.717592 kcal Electronic energy + Delta-G solvation = -26266.496678 eV Core-core repulsion = 22634.301283 eV Total energy + Delta-G solvation = -3632.195395 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.38898 -39.55124 -37.51691 -35.70161 -33.41158 -32.79655 -32.06290 -30.28458 -29.63657 -27.95956 -27.19114 -25.33808 -24.43963 -22.24343 -22.09126 -20.42051 -19.75688 -19.29687 -18.28998 -17.93372 -17.20610 -16.80650 -16.12115 -15.82345 -15.22083 -14.79040 -14.46614 -14.18831 -13.98046 -13.89050 -13.66708 -13.57085 -13.32252 -13.11742 -12.92084 -12.85415 -12.41052 -12.33516 -11.51733 -11.41966 -11.24907 -11.00211 -10.73442 -10.57922 -10.47340 -10.21885 -10.18741 -10.10531 -9.87944 -9.83236 -9.74525 -9.62129 -9.35442 -9.06458 -8.66279 -8.42752 -6.71046 -5.80924 -3.22953 0.51483 1.18361 1.57432 2.39622 2.62034 2.69165 2.77929 3.34648 3.37365 3.43017 3.44951 4.13814 4.29889 4.42957 4.47664 4.57189 4.77653 4.96617 5.06090 5.16682 5.26031 5.32789 5.41065 5.47486 5.50657 5.58513 5.80916 5.87759 5.95543 6.04913 6.17775 6.27850 6.44194 6.54519 6.60525 6.74410 6.82760 6.92005 7.32304 7.40500 7.51622 7.56080 7.64055 7.77536 8.16203 8.42494 9.18673 9.82222 10.38872 11.27836 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021434 B = 0.002779 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.023026 B =10073.528705 C =10391.689252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.207 4.207 3 C 0.214 3.786 4 N -0.600 5.600 5 C 0.515 3.485 6 O -0.526 6.526 7 C -0.066 4.066 8 C -0.196 4.196 9 C 0.042 3.958 10 N -0.470 5.470 11 C 0.013 3.987 12 S 0.135 5.865 13 C 0.145 3.855 14 C -0.139 4.139 15 C 0.148 3.852 16 N -0.592 5.592 17 C -0.253 4.253 18 H 0.066 0.934 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.901 3.099 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.279 1.279 25 C 0.174 3.826 26 C -0.141 4.141 27 H 0.216 0.784 28 H 0.097 0.903 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.106 0.894 32 H 0.174 0.826 33 H 0.198 0.802 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.020 0.980 38 H 0.057 0.943 39 H 0.254 0.746 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.058 0.942 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 21.753 -4.623 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C 0.092 3.908 4 N -0.332 5.332 5 C 0.302 3.698 6 O -0.401 6.401 7 C -0.108 4.108 8 C -0.317 4.317 9 C -0.109 4.109 10 N -0.183 5.183 11 C -0.285 4.285 12 S 0.387 5.613 13 C 0.044 3.956 14 C -0.179 4.179 15 C 0.020 3.980 16 N -0.314 5.314 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.047 3.953 26 C -0.181 4.181 27 H 0.233 0.767 28 H 0.115 0.885 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.124 0.876 32 H 0.191 0.809 33 H 0.215 0.785 34 H 0.115 0.885 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.108 0.892 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.459 21.730 -3.460 22.052 hybrid contribution 0.059 -0.997 -0.951 1.379 sum -1.400 20.733 -4.411 21.243 Atomic orbital electron populations 1.24934 0.95928 1.00690 0.98507 1.23488 0.94873 1.00751 1.01723 1.18422 0.83919 1.03754 0.84739 1.48279 1.64685 1.07221 1.13042 1.20382 0.77746 0.85946 0.85769 1.90737 1.44994 1.86106 1.18305 1.20136 1.04658 0.89795 0.96231 1.25311 0.97355 1.05533 1.03544 1.21671 0.97337 0.95299 0.96585 1.66301 1.27144 1.17921 1.06962 1.28330 0.91522 1.04087 1.04517 1.84026 1.15909 1.36296 1.25059 1.21333 0.96715 0.78365 0.99232 1.22447 0.97233 0.98636 0.99564 1.20853 0.89577 0.89891 0.97638 1.44089 1.06857 1.17436 1.63061 1.19166 1.22289 0.90144 1.06684 0.91640 1.25046 1.01800 0.97492 0.95293 1.70038 1.34365 1.37230 1.12928 0.86304 0.77993 0.82649 0.79962 1.21441 1.21573 1.20452 1.20762 0.93351 0.88399 0.92759 1.22533 0.95079 0.98953 1.01560 0.76727 0.88464 0.87303 0.86706 0.87609 0.80923 0.78544 0.88496 0.92672 0.92052 0.96205 0.92404 0.93608 0.89178 0.96244 0.92284 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 19.25 29.55 0.57 -1.44 16 2 C -0.21 -2.43 11.92 -37.12 -0.44 -2.88 16 3 C 0.21 2.27 5.15 -6.82 -0.04 2.23 16 4 N -0.60 -8.22 2.37 -169.19 -0.40 -8.62 16 5 C 0.52 7.19 7.66 -10.99 -0.08 7.11 16 6 O -0.53 -9.58 15.36 5.55 0.09 -9.50 16 7 C -0.07 -0.64 4.79 -29.04 -0.14 -0.78 16 8 C -0.20 -2.16 5.09 -35.92 -0.18 -2.35 16 9 C 0.04 0.49 11.25 -19.18 -0.22 0.27 16 10 N -0.47 -5.74 10.54 -15.75 -0.17 -5.91 16 11 C 0.01 0.13 12.23 51.58 0.63 0.76 16 12 S 0.13 1.35 23.22 -107.50 -2.50 -1.15 16 13 C 0.14 2.49 2.48 -67.73 -0.17 2.32 16 14 C -0.14 -2.31 5.34 -26.45 -0.14 -2.45 16 15 C 0.15 3.04 6.50 -3.71 -0.02 3.01 16 16 N -0.59 -14.58 3.00 -172.31 -0.52 -15.10 16 17 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 18 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 19 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 20 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16 21 Si 0.90 21.44 29.59 -169.99 -5.03 16.41 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.17 4.14 5.31 -3.71 -0.02 4.12 16 26 C -0.14 -2.70 4.73 -26.61 -0.13 -2.83 16 27 H 0.22 1.72 7.80 -54.09 -0.42 1.30 16 28 H 0.10 0.67 6.44 -51.93 -0.33 0.34 16 29 H 0.11 1.16 6.46 -51.93 -0.34 0.82 16 30 H 0.12 0.76 7.40 -51.93 -0.38 0.37 16 31 H 0.11 0.90 7.95 -51.93 -0.41 0.49 16 32 H 0.17 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.10 1.92 6.90 -51.93 -0.36 1.57 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.98 6.73 -51.93 -0.35 0.63 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.13 7.03 -51.93 -0.36 0.77 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 368.36 15.07 5.55 5.55 Total: -1.00 -33.79 368.36 -8.73 -42.52 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -5.77 Total: 1.15 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -0.61 Total: 0.09 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.46 Total: -55.08 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -2.50 Total: -1.15 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.79 -8.73 -42.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716807155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.240 kcal (2) G-P(sol) polarization free energy of solvation -33.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds