Wall clock time and date at job start Tue Mar 31 2020 17:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47210 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46868 * 277.80009 * 3 2 1 5 5 C 1.34769 * 120.00112 * 269.99930 * 4 3 2 6 6 O 1.21285 * 120.00115 * 180.02562 * 5 4 3 7 7 C 1.50694 * 120.00374 * 0.02562 * 5 4 3 8 8 C 1.50701 * 109.47715 * 179.97438 * 7 5 4 9 9 C 1.33636 * 126.03446 * 89.99615 * 8 7 5 10 10 N 1.31788 * 114.49702 * 180.02562 * 9 8 7 11 11 C 1.29022 * 117.12474 * 0.02562 * 10 9 8 12 12 S 1.70979 * 110.16838 * 359.71833 * 11 10 9 13 13 C 1.46500 * 119.99418 * 90.00245 * 4 3 2 14 14 C 1.53349 * 109.42211 * 60.12667 * 13 4 3 15 15 C 1.53193 * 109.14947 * 178.67019 * 14 13 4 16 16 N 1.46932 * 108.89365 * 54.58000 * 15 14 13 17 17 C 1.36929 * 120.62923 * 126.33970 * 16 15 14 18 18 H 1.07994 * 120.00472 * 332.28422 * 17 16 15 19 19 C 1.38823 * 119.99710 * 152.28799 * 17 16 15 20 20 N 1.31617 * 119.99601 * 342.59309 * 19 17 16 21 21 Si 1.86793 * 119.99892 * 162.59877 * 19 17 16 22 22 H 1.48502 * 109.47323 * 94.34576 * 21 19 17 23 23 H 1.48497 * 109.47157 * 214.34797 * 21 19 17 24 24 H 1.48496 * 109.47300 * 334.34614 * 21 19 17 25 25 C 1.46927 * 118.73576 * 306.31982 * 16 15 14 26 26 C 1.53038 * 109.46224 * 299.99271 * 13 4 3 27 27 H 4.40643 * 5.51368 * 179.97438 * 4 1 2 28 28 H 1.08995 * 109.46975 * 157.80212 * 3 2 1 29 29 H 1.09001 * 109.46746 * 37.79878 * 3 2 1 30 30 H 1.09004 * 109.46992 * 299.99910 * 7 5 4 31 31 H 1.08998 * 109.47054 * 59.99724 * 7 5 4 32 32 H 1.08002 * 122.75354 * 0.02562 * 9 8 7 33 33 H 1.08000 * 124.91541 * 180.02562 * 11 10 9 34 34 H 1.09005 * 109.45754 * 180.02562 * 13 4 3 35 35 H 1.08996 * 109.68615 * 58.70782 * 14 13 4 36 36 H 1.08996 * 109.47201 * 298.50889 * 14 13 4 37 37 H 1.08995 * 109.58815 * 294.71872 * 15 14 13 38 38 H 1.09000 * 109.58606 * 174.43227 * 15 14 13 39 39 H 0.97000 * 119.99465 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.58712 * 173.40018 * 25 16 15 41 41 H 1.09003 * 109.58223 * 293.67509 * 25 16 15 42 42 H 1.09002 * 109.49898 * 61.44070 * 26 13 4 43 43 H 1.09001 * 109.50239 * 301.34157 * 26 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1344 -0.1866 1.3685 5 6 3.3586 0.8836 2.1563 6 8 3.7633 0.7286 3.2891 7 6 3.1063 2.2729 1.6299 8 6 3.4318 3.2826 2.7003 9 6 4.6204 3.8591 2.9019 10 7 4.6509 4.7116 3.9064 11 6 3.5543 4.8860 4.5635 12 16 2.3108 3.9160 3.9031 13 6 3.3792 -1.5372 1.8804 14 6 4.4389 -2.2271 1.0128 15 6 4.7141 -3.6261 1.5732 16 7 3.4436 -4.3574 1.6721 17 6 3.3004 -5.5890 1.0911 18 1 3.8874 -5.8477 0.2223 19 6 2.4008 -6.5051 1.6189 20 7 1.9435 -6.3479 2.8431 21 14 1.8393 -7.9607 0.5918 22 1 2.6920 -9.1383 0.8941 23 1 0.4249 -8.2779 0.9142 24 1 1.9545 -7.6232 -0.8498 25 6 2.3298 -3.7421 2.4068 26 6 2.0781 -2.3419 1.8387 27 1 -1.0500 0.0002 0.0000 28 1 3.0089 0.9523 -0.3882 29 1 3.0097 -0.8112 -0.6299 30 1 3.7362 2.4511 0.7583 31 1 2.0582 2.3694 1.3467 32 1 5.4852 3.6439 2.2918 33 1 3.4374 5.5523 5.4054 34 1 3.7359 -1.4767 2.9086 35 1 5.3593 -1.6433 1.0239 36 1 4.0727 -2.3106 -0.0104 37 1 5.1650 -3.5415 2.5619 38 1 5.3919 -4.1597 0.9069 39 1 1.3152 -6.9882 3.2120 40 1 1.4335 -4.3510 2.2887 41 1 2.5853 -3.6694 3.4639 42 1 1.7340 -2.4241 0.8077 43 1 1.3191 -1.8377 2.4369 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716807155.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:23:51 Heat of formation + Delta-G solvation = 76.048680 kcal Electronic energy + Delta-G solvation = -26267.392949 eV Core-core repulsion = 22634.301283 eV Total energy + Delta-G solvation = -3633.091666 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.47160 -40.43630 -39.01913 -37.01847 -34.81179 -33.72117 -33.42128 -31.93486 -31.31618 -28.85657 -28.18520 -26.89636 -25.54708 -23.90764 -23.67004 -21.38933 -20.82601 -20.71444 -19.20702 -18.88192 -18.63735 -18.17153 -17.27847 -16.79530 -16.75736 -16.08298 -15.68723 -15.41545 -15.26224 -14.96614 -14.87585 -14.76704 -14.63359 -14.37798 -14.17356 -14.14901 -13.70941 -13.35784 -13.19887 -13.04244 -12.68497 -12.54146 -12.25544 -12.16568 -12.03172 -11.94008 -11.55665 -11.39312 -11.30257 -11.14941 -10.86403 -10.63535 -10.57788 -10.20224 -9.86770 -9.82136 -8.73022 -7.88631 -5.34060 -0.26474 0.44160 0.80609 1.41248 1.47080 1.48284 1.58436 1.60775 1.87719 1.95087 2.39827 2.51029 3.27567 3.41491 3.51688 3.57626 3.64732 3.74903 3.94999 4.04037 4.10896 4.22487 4.32265 4.38240 4.43493 4.45744 4.60081 4.64414 4.74475 4.78282 4.84947 5.02377 5.06212 5.09543 5.15294 5.19398 5.28915 5.43887 5.52761 5.62795 5.67391 6.34052 6.37333 6.73527 6.73810 7.09542 7.12357 7.82991 8.35903 9.18656 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.021434 B = 0.002779 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.023026 B =10073.528705 C =10391.689252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.232 4.232 3 C 0.209 3.791 4 N -0.597 5.597 5 C 0.513 3.487 6 O -0.576 6.576 7 C -0.055 4.055 8 C -0.211 4.211 9 C 0.031 3.969 10 N -0.502 5.502 11 C 0.016 3.984 12 S 0.136 5.864 13 C 0.155 3.845 14 C -0.121 4.121 15 C 0.142 3.858 16 N -0.608 5.608 17 C -0.261 4.261 18 H 0.073 0.927 19 C -0.053 4.053 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.287 1.287 23 H -0.294 1.294 24 H -0.265 1.265 25 C 0.182 3.818 26 C -0.119 4.119 27 H 0.236 0.764 28 H 0.143 0.857 29 H 0.112 0.888 30 H 0.155 0.845 31 H 0.123 0.877 32 H 0.186 0.814 33 H 0.227 0.773 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.005 0.995 38 H 0.065 0.935 39 H 0.249 0.751 40 H 0.057 0.943 41 H -0.014 1.014 42 H 0.064 0.936 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.995 23.552 -7.126 24.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.233 4.233 3 C 0.088 3.912 4 N -0.327 5.327 5 C 0.302 3.698 6 O -0.455 6.455 7 C -0.097 4.097 8 C -0.332 4.332 9 C -0.120 4.120 10 N -0.216 5.216 11 C -0.281 4.281 12 S 0.389 5.611 13 C 0.052 3.948 14 C -0.161 4.161 15 C 0.016 3.984 16 N -0.331 5.331 17 C -0.391 4.391 18 H 0.091 0.909 19 C -0.248 4.248 20 N -0.584 5.584 21 Si 0.796 3.204 22 H -0.214 1.214 23 H -0.221 1.221 24 H -0.190 1.190 25 C 0.056 3.944 26 C -0.159 4.159 27 H 0.253 0.747 28 H 0.160 0.840 29 H 0.130 0.870 30 H 0.172 0.828 31 H 0.141 0.859 32 H 0.203 0.797 33 H 0.243 0.757 34 H 0.083 0.917 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.023 0.977 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.004 0.996 42 H 0.083 0.917 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.407 23.564 -6.013 24.360 hybrid contribution 0.053 -1.524 -0.096 1.528 sum -1.354 22.041 -6.108 22.912 Atomic orbital electron populations 1.25650 0.96899 1.00210 0.97569 1.23862 0.95595 1.01337 1.02503 1.18809 0.83451 1.06329 0.82606 1.48156 1.64609 1.05528 1.14445 1.21135 0.76342 0.87347 0.84979 1.90724 1.47225 1.86918 1.20592 1.20195 1.06531 0.86120 0.96826 1.25512 0.97488 1.06035 1.04196 1.21968 0.98033 0.95295 0.96725 1.66337 1.28236 1.19051 1.07925 1.28878 0.90851 1.03750 1.04607 1.84002 1.15938 1.36162 1.24992 1.20866 0.95371 0.80436 0.98135 1.22238 0.98233 0.96011 0.99626 1.21024 0.88031 0.92008 0.97374 1.44334 1.08437 1.17433 1.62914 1.19553 1.21899 0.90895 1.06714 0.90940 1.25845 1.02355 1.00389 0.96240 1.70210 1.35217 1.38316 1.14678 0.85256 0.76895 0.79273 0.78992 1.21410 1.22075 1.18983 1.20491 0.91967 0.90618 0.91350 1.22198 0.96344 0.96205 1.01123 0.74714 0.83966 0.86980 0.82753 0.85872 0.79687 0.75675 0.91655 0.90089 0.90478 0.97676 0.91616 0.94177 0.92432 0.99596 0.91691 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.62 19.25 74.32 1.43 -2.19 16 2 C -0.23 -4.77 11.92 31.13 0.37 -4.40 16 3 C 0.21 3.65 5.15 84.58 0.44 4.08 16 4 N -0.60 -14.99 2.37 -807.57 -1.91 -16.90 16 5 C 0.51 13.34 7.66 87.66 0.67 14.01 16 6 O -0.58 -20.83 15.36 -3.05 -0.05 -20.88 16 7 C -0.06 -0.89 4.79 29.10 0.14 -0.75 16 8 C -0.21 -4.23 5.09 24.64 0.13 -4.11 16 9 C 0.03 0.66 11.25 83.65 0.94 1.60 16 10 N -0.50 -11.64 10.54 -203.74 -2.15 -13.79 16 11 C 0.02 0.29 12.23 130.66 1.60 1.89 16 12 S 0.14 2.54 23.22 -56.49 -1.31 1.23 16 13 C 0.16 5.23 2.48 45.12 0.11 5.34 16 14 C -0.12 -3.82 5.34 30.78 0.16 -3.65 16 15 C 0.14 5.80 6.50 86.36 0.56 6.36 16 16 N -0.61 -30.46 3.00 -699.08 -2.09 -32.55 16 17 C -0.26 -14.15 9.58 84.04 0.81 -13.35 16 18 H 0.07 3.77 7.89 -2.91 -0.02 3.74 16 19 C -0.05 -2.97 4.91 84.87 0.42 -2.55 16 20 N -0.94 -56.23 11.19 21.65 0.24 -55.99 16 21 Si 0.97 44.50 29.59 68.60 2.03 46.53 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 C 0.18 9.06 5.31 86.36 0.46 9.52 16 26 C -0.12 -4.58 4.73 30.67 0.15 -4.43 16 27 H 0.24 3.18 7.80 -4.42 -0.03 3.14 16 28 H 0.14 1.19 6.44 -2.39 -0.02 1.18 16 29 H 0.11 1.94 6.46 -2.39 -0.02 1.92 16 30 H 0.15 1.25 7.40 -2.39 -0.02 1.23 16 31 H 0.12 1.61 7.95 -2.39 -0.02 1.60 16 32 H 0.19 3.22 8.06 -2.91 -0.02 3.19 16 33 H 0.23 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.07 2.66 6.90 -2.38 -0.02 2.64 16 35 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.08 2.23 6.73 -2.39 -0.02 2.21 16 37 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 38 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 39 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 40 H 0.06 3.22 6.04 -2.39 -0.01 3.20 16 41 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 42 H 0.06 2.43 7.03 -2.39 -0.02 2.42 16 43 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -76.78 368.36 4.15 -72.63 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.02 Total: 12.35 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 8.38 Total: 7.37 kcal Atomic # 7 Polarization: -113.32 SS G_CDS: -5.91 Total: -119.23 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.31 Total: 1.23 kcal Total: -76.78 4.15 -72.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716807155.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.680 kcal (2) G-P(sol) polarization free energy of solvation -76.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds