Wall clock time and date at job start Tue Mar 31 2020 18:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47280 * 2 1 4 4 C 1.53003 * 109.47228 * 239.99684 * 2 1 3 5 5 C 1.52992 * 109.47396 * 175.00036 * 4 2 1 6 6 C 1.52995 * 109.47494 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47459 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99847 * 179.97438 * 7 6 5 9 9 H 1.08005 * 120.00245 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99720 * 180.02562 * 8 7 6 11 11 N 1.31617 * 120.00063 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99849 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47391 * 60.00125 * 12 10 8 14 14 H 1.48505 * 109.47197 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47313 * 300.00291 * 12 10 8 16 16 N 1.46504 * 109.47308 * 120.00092 * 2 1 3 17 17 C 1.34776 * 119.99667 * 275.00048 * 16 2 1 18 18 O 1.21612 * 120.00380 * 359.97438 * 17 16 2 19 19 C 1.47394 * 119.99872 * 179.97438 * 17 16 2 20 20 C 1.38868 * 120.01700 * 359.97438 * 19 17 16 21 21 C 1.38235 * 120.46215 * 179.97438 * 20 19 17 22 22 C 1.37957 * 120.27486 * 359.97438 * 21 20 19 23 23 C 1.39189 * 120.44952 * 0.02562 * 22 21 20 24 24 S 1.76142 * 131.63573 * 179.97438 * 23 22 21 25 25 C 1.70680 * 90.71426 * 180.02562 * 24 23 22 26 26 N 1.28160 * 111.37592 * 359.97438 * 25 24 23 27 27 C 1.33643 * 118.01977 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47190 * 300.00081 * 1 2 3 29 29 H 1.08993 * 109.47375 * 60.00462 * 1 2 3 30 30 H 1.09002 * 109.47035 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47379 * 295.00283 * 4 2 1 32 32 H 1.09000 * 109.46930 * 54.99867 * 4 2 1 33 33 H 1.09005 * 109.47507 * 300.00332 * 5 4 2 34 34 H 1.09000 * 109.47218 * 60.00008 * 5 4 2 35 35 H 1.09000 * 109.47181 * 300.00186 * 6 5 4 36 36 H 1.09000 * 109.47030 * 59.99710 * 6 5 4 37 37 H 0.96998 * 119.99905 * 0.02562 * 7 6 5 38 38 H 0.96999 * 120.00008 * 179.97438 * 11 10 8 39 39 H 0.96996 * 120.00045 * 94.99704 * 16 2 1 40 40 H 1.08000 * 119.77287 * 359.95787 * 20 19 17 41 41 H 1.08002 * 119.86599 * 179.72338 * 21 20 19 42 42 H 1.07998 * 119.78093 * 179.97438 * 22 21 20 43 43 H 1.08001 * 124.31322 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0747 -1.3341 -2.5632 7 7 5.5348 -1.2303 -2.6252 8 6 6.2185 -1.8045 -3.6635 9 1 5.6814 -2.3336 -4.4369 10 6 7.6019 -1.7065 -3.7220 11 7 8.2565 -1.0621 -2.7793 12 14 8.5346 -2.4892 -5.1387 13 1 8.0783 -1.8942 -6.4205 14 1 9.9894 -2.2443 -4.9689 15 1 8.2776 -3.9517 -5.1526 16 7 2.0184 -0.6906 1.1962 17 6 2.1471 -0.0182 2.3571 18 8 1.8582 1.1618 2.4116 19 6 2.6379 -0.7132 3.5607 20 6 2.9673 -2.0608 3.4990 21 6 3.4290 -2.7215 4.6221 22 6 3.5679 -2.0474 5.8177 23 6 3.2450 -0.6964 5.9074 24 16 3.3063 0.4343 7.2565 25 6 2.7237 1.6902 6.2582 26 7 2.5181 1.2787 5.0620 27 6 2.7753 -0.0034 4.7861 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -1.7716 -1.2056 32 1 1.6054 -0.2619 -2.1370 33 1 3.8532 0.4369 -1.3574 34 1 3.9994 -1.0729 -0.4260 35 1 3.7863 -2.3844 -2.5200 36 1 3.6401 -0.8743 -3.4507 37 1 6.0171 -0.7554 -1.9305 38 1 9.2232 -0.9940 -2.8200 39 1 2.2490 -1.6318 1.1526 40 1 2.8618 -2.5966 2.5672 41 1 3.6781 -3.7708 4.5643 42 1 3.9289 -2.5715 6.6902 43 1 2.5511 2.7028 6.5918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717668941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:58 Heat of formation + Delta-G solvation = 28.430422 kcal Electronic energy + Delta-G solvation = -25140.125239 eV Core-core repulsion = 21504.968690 eV Total energy + Delta-G solvation = -3635.156549 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.00926 -39.42585 -37.16047 -36.63900 -34.79725 -32.81502 -31.89388 -30.52527 -30.23837 -29.30049 -25.72209 -25.35885 -24.47965 -23.01347 -21.97882 -21.30036 -20.78721 -20.53080 -18.95836 -17.41644 -16.99567 -16.72577 -16.36400 -15.72804 -15.43823 -15.33365 -14.68657 -14.57751 -14.54378 -14.06342 -13.86026 -13.67006 -13.44568 -12.98156 -12.97083 -12.68085 -12.44883 -12.20410 -12.13757 -12.07232 -11.57457 -11.28654 -11.11820 -10.83085 -10.78351 -10.45774 -10.43043 -10.37835 -10.04405 -10.00257 -9.66850 -9.63794 -9.12240 -9.06081 -8.84261 -8.45969 -6.89443 -5.73823 -3.02620 -0.10700 0.49839 0.90906 1.35951 2.07853 2.69296 3.06401 3.45085 3.49110 3.50596 3.57865 3.68222 4.21589 4.46108 4.56519 4.60659 4.75877 4.81491 4.82766 5.05579 5.11386 5.19016 5.29585 5.45569 5.59314 5.60061 5.62692 5.66787 5.70542 5.81900 5.85492 5.99950 6.10695 6.15066 6.17979 6.23899 6.38716 6.43513 6.52730 6.89300 6.92473 7.34564 7.49067 7.71039 8.23101 8.45202 9.55767 10.15217 10.49506 11.49095 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.002463 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.097346 B =11364.016233 C =12604.577358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.122 4.122 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.908 3.092 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.719 5.719 17 C 0.553 3.447 18 O -0.507 6.507 19 C -0.079 4.079 20 C -0.069 4.069 21 C -0.107 4.107 22 C -0.047 4.047 23 C -0.191 4.191 24 S 0.091 5.909 25 C 0.071 3.929 26 N -0.437 5.437 27 C 0.129 3.871 28 H 0.058 0.942 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.398 0.602 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 -1.494 21.855 27.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.739 3.261 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.372 5.372 17 C 0.339 3.661 18 O -0.382 6.382 19 C -0.085 4.085 20 C -0.090 4.090 21 C -0.129 4.129 22 C -0.070 4.070 23 C -0.310 4.310 24 S 0.345 5.655 25 C -0.233 4.233 26 N -0.148 5.148 27 C 0.006 3.994 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.233 0.767 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.154 0.846 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -16.018 -0.257 22.388 27.529 hybrid contribution 0.843 -1.054 -1.330 1.895 sum -15.175 -1.311 21.058 25.989 Atomic orbital electron populations 1.22170 0.95429 1.01959 1.02451 1.21048 0.93588 0.97872 0.83602 0.89209 1.21852 0.96879 1.00737 0.96617 1.21736 0.93648 1.01537 0.99476 1.20646 0.86179 0.96400 0.94224 1.42382 1.00220 1.66252 1.29014 1.19199 0.89440 1.27167 1.01314 0.91275 1.24755 0.96462 1.01252 0.98647 1.69655 1.07247 1.46970 1.34409 0.86261 0.78982 0.78940 0.81961 1.21267 1.21680 1.21291 1.46023 1.67646 1.14002 1.09533 1.17934 0.78584 0.86819 0.82788 1.90852 1.48218 1.14711 1.84445 1.19629 1.03433 0.93488 0.91934 1.21301 0.95652 0.92514 0.99519 1.21106 0.99351 1.00756 0.91681 1.20512 0.97113 0.90513 0.98815 1.23897 1.09795 1.00198 0.97150 1.84000 1.66144 1.02329 1.13044 1.28439 0.99439 1.04571 0.90862 1.65964 1.16964 1.13599 1.18232 1.18762 0.99419 0.87940 0.93248 0.92306 0.91508 0.92560 0.91428 0.90193 0.91920 0.92092 0.96591 0.96509 0.78328 0.93475 0.76678 0.84071 0.83769 0.84629 0.77776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.14 1.72 2.57 -67.93 -0.17 1.55 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 4 C -0.12 -1.47 4.75 -26.73 -0.13 -1.59 16 5 C -0.13 -2.03 5.21 -26.74 -0.14 -2.16 16 6 C 0.15 3.09 6.26 -4.04 -0.03 3.06 16 7 N -0.73 -19.16 5.60 -59.91 -0.34 -19.50 16 8 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 9 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 11 N -0.93 -28.85 13.06 55.49 0.72 -28.13 16 12 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 16 N -0.72 -8.46 4.48 -54.89 -0.25 -8.71 16 17 C 0.55 8.00 7.72 -12.53 -0.10 7.90 16 18 O -0.51 -9.22 15.44 5.27 0.08 -9.14 16 19 C -0.08 -1.00 5.92 -104.39 -0.62 -1.62 16 20 C -0.07 -0.63 9.49 -39.35 -0.37 -1.00 16 21 C -0.11 -0.81 10.02 -39.69 -0.40 -1.20 16 22 C -0.05 -0.38 10.05 -39.33 -0.40 -0.78 16 23 C -0.19 -2.01 6.55 -38.59 -0.25 -2.27 16 24 S 0.09 0.74 23.18 -107.50 -2.49 -1.75 16 25 C 0.07 0.69 12.12 51.23 0.62 1.31 16 26 N -0.44 -6.11 9.43 -12.74 -0.12 -6.23 16 27 C 0.13 1.73 6.73 -84.89 -0.57 1.16 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.99 7.75 -51.93 -0.40 0.58 16 35 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.57 7.67 -40.82 -0.31 10.25 16 38 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 39 H 0.40 3.71 6.60 -40.82 -0.27 3.44 16 40 H 0.14 0.94 6.34 -52.49 -0.33 0.61 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 43 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -36.99 375.83 -10.10 -47.09 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.91 Total: 7.59 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -2.45 Total: -4.54 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: 0.02 Total: -62.57 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.49 Total: -1.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.99 -10.10 -47.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717668941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.524 kcal (2) G-P(sol) polarization free energy of solvation -36.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds