Wall clock time and date at job start Tue Mar 31 2020 18:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47280 * 2 1 4 4 C 1.53003 * 109.47228 * 239.99684 * 2 1 3 5 5 C 1.52992 * 109.47396 * 175.00036 * 4 2 1 6 6 C 1.52995 * 109.47494 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47459 * 179.97438 * 6 5 4 8 8 C 1.36936 * 119.99847 * 179.97438 * 7 6 5 9 9 H 1.08005 * 120.00245 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99720 * 180.02562 * 8 7 6 11 11 N 1.31617 * 120.00063 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99849 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47391 * 60.00125 * 12 10 8 14 14 H 1.48505 * 109.47197 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47313 * 300.00291 * 12 10 8 16 16 N 1.46504 * 109.47308 * 120.00092 * 2 1 3 17 17 C 1.34776 * 119.99667 * 275.00048 * 16 2 1 18 18 O 1.21612 * 120.00380 * 359.97438 * 17 16 2 19 19 C 1.47394 * 119.99872 * 179.97438 * 17 16 2 20 20 C 1.38868 * 120.01700 * 359.97438 * 19 17 16 21 21 C 1.38235 * 120.46215 * 179.97438 * 20 19 17 22 22 C 1.37957 * 120.27486 * 359.97438 * 21 20 19 23 23 C 1.39189 * 120.44952 * 0.02562 * 22 21 20 24 24 S 1.76142 * 131.63573 * 179.97438 * 23 22 21 25 25 C 1.70680 * 90.71426 * 180.02562 * 24 23 22 26 26 N 1.28160 * 111.37592 * 359.97438 * 25 24 23 27 27 C 1.33643 * 118.01977 * 0.02562 * 26 25 24 28 28 H 1.09004 * 109.47190 * 300.00081 * 1 2 3 29 29 H 1.08993 * 109.47375 * 60.00462 * 1 2 3 30 30 H 1.09002 * 109.47035 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47379 * 295.00283 * 4 2 1 32 32 H 1.09000 * 109.46930 * 54.99867 * 4 2 1 33 33 H 1.09005 * 109.47507 * 300.00332 * 5 4 2 34 34 H 1.09000 * 109.47218 * 60.00008 * 5 4 2 35 35 H 1.09000 * 109.47181 * 300.00186 * 6 5 4 36 36 H 1.09000 * 109.47030 * 59.99710 * 6 5 4 37 37 H 0.96998 * 119.99905 * 0.02562 * 7 6 5 38 38 H 0.96999 * 120.00008 * 179.97438 * 11 10 8 39 39 H 0.96996 * 120.00045 * 94.99704 * 16 2 1 40 40 H 1.08000 * 119.77287 * 359.95787 * 20 19 17 41 41 H 1.08002 * 119.86599 * 179.72338 * 21 20 19 42 42 H 1.07998 * 119.78093 * 179.97438 * 22 21 20 43 43 H 1.08001 * 124.31322 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5647 -0.6134 -1.3137 6 6 4.0747 -1.3341 -2.5632 7 7 5.5348 -1.2303 -2.6252 8 6 6.2185 -1.8045 -3.6635 9 1 5.6814 -2.3336 -4.4369 10 6 7.6019 -1.7065 -3.7220 11 7 8.2565 -1.0621 -2.7793 12 14 8.5346 -2.4892 -5.1387 13 1 8.0783 -1.8942 -6.4205 14 1 9.9894 -2.2443 -4.9689 15 1 8.2776 -3.9517 -5.1526 16 7 2.0184 -0.6906 1.1962 17 6 2.1471 -0.0182 2.3571 18 8 1.8582 1.1618 2.4116 19 6 2.6379 -0.7132 3.5607 20 6 2.9673 -2.0608 3.4990 21 6 3.4290 -2.7215 4.6221 22 6 3.5679 -2.0474 5.8177 23 6 3.2450 -0.6964 5.9074 24 16 3.3063 0.4343 7.2565 25 6 2.7237 1.6902 6.2582 26 7 2.5181 1.2787 5.0620 27 6 2.7753 -0.0034 4.7861 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.7516 -1.7716 -1.2056 32 1 1.6054 -0.2619 -2.1370 33 1 3.8532 0.4369 -1.3574 34 1 3.9994 -1.0729 -0.4260 35 1 3.7863 -2.3844 -2.5200 36 1 3.6401 -0.8743 -3.4507 37 1 6.0171 -0.7554 -1.9305 38 1 9.2232 -0.9940 -2.8200 39 1 2.2490 -1.6318 1.1526 40 1 2.8618 -2.5966 2.5672 41 1 3.6781 -3.7708 4.5643 42 1 3.9289 -2.5715 6.6902 43 1 2.5511 2.7028 6.5918 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717668941.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:57 Heat of formation + Delta-G solvation = 2.837053 kcal Electronic energy + Delta-G solvation = -25141.235051 eV Core-core repulsion = 21504.968690 eV Total energy + Delta-G solvation = -3636.266361 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.82010 -40.40189 -37.96416 -37.81644 -36.48485 -34.24856 -33.18771 -31.77824 -30.94749 -30.63907 -27.24363 -26.15252 -25.36851 -24.67926 -22.90714 -22.36545 -22.05165 -21.54909 -19.77570 -19.11309 -18.22859 -17.54392 -17.25384 -16.67339 -16.52145 -16.30744 -16.04655 -15.79598 -15.57906 -15.30689 -15.25806 -15.00623 -14.58435 -14.42725 -13.86614 -13.61400 -13.41418 -13.18842 -13.11327 -13.01409 -12.92167 -12.73331 -12.40052 -12.29323 -12.26008 -12.07824 -11.85614 -11.71491 -11.50248 -11.17865 -11.01853 -10.91945 -10.48645 -10.10704 -9.82154 -9.16037 -9.00652 -7.95264 -5.24932 -0.85426 -0.21180 0.25247 0.63474 1.36462 1.46931 1.50705 1.56905 1.77459 2.12970 2.56209 2.73642 3.01592 3.38198 3.47737 3.64191 3.80468 3.90553 3.99600 4.10021 4.17240 4.17992 4.28844 4.38180 4.47448 4.57319 4.59713 4.68395 4.82231 4.86203 4.92245 4.97628 5.01839 5.02234 5.12811 5.18921 5.30187 5.37125 5.43031 5.50411 5.55489 5.60010 6.26822 6.51579 6.65860 7.23889 7.32191 8.09614 8.31633 9.28428 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012626 B = 0.002463 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.097346 B =11364.016233 C =12604.577358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.059 0.941 4 C -0.107 4.107 5 C -0.114 4.114 6 C 0.151 3.849 7 N -0.751 5.751 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.079 4.079 11 N -0.973 5.973 12 Si 0.977 3.023 13 H -0.278 1.278 14 H -0.296 1.296 15 H -0.274 1.274 16 N -0.708 5.708 17 C 0.548 3.452 18 O -0.559 6.559 19 C -0.119 4.119 20 C -0.059 4.059 21 C -0.104 4.104 22 C -0.041 4.041 23 C -0.216 4.216 24 S 0.149 5.851 25 C 0.064 3.936 26 N -0.496 5.496 27 C 0.097 3.903 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.041 0.959 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.019 0.981 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.411 0.589 40 H 0.164 0.836 41 H 0.183 0.817 42 H 0.169 0.831 43 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.428 -4.235 22.225 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.077 0.923 4 C -0.146 4.146 5 C -0.152 4.152 6 C 0.025 3.975 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.096 0.904 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.805 3.195 13 H -0.204 1.204 14 H -0.222 1.222 15 H -0.200 1.200 16 N -0.361 5.361 17 C 0.336 3.664 18 O -0.438 6.438 19 C -0.126 4.126 20 C -0.080 4.080 21 C -0.126 4.126 22 C -0.063 4.063 23 C -0.335 4.335 24 S 0.404 5.596 25 C -0.239 4.239 26 N -0.208 5.208 27 C -0.026 4.026 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.048 0.952 36 H 0.037 0.963 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.249 0.751 40 H 0.182 0.818 41 H 0.200 0.800 42 H 0.186 0.814 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -16.585 -3.044 22.747 28.315 hybrid contribution 0.979 -0.219 -1.349 1.682 sum -15.605 -3.264 21.398 26.684 Atomic orbital electron populations 1.22084 0.93751 1.03152 1.02119 1.20976 0.94806 0.96423 0.83752 0.92262 1.21749 0.93478 1.02438 0.96886 1.21597 0.96560 0.99554 0.97461 1.20854 0.83103 0.97540 0.96025 1.42666 1.02595 1.65948 1.28173 1.19654 0.90017 1.26435 1.01805 0.90393 1.25644 0.97561 1.02458 1.01474 1.69830 1.07087 1.48882 1.36554 0.85164 0.76984 0.78482 0.78851 1.20392 1.22220 1.19964 1.45944 1.66873 1.14491 1.08816 1.18363 0.77799 0.86410 0.83842 1.90806 1.50760 1.16901 1.85335 1.19708 1.06486 0.95078 0.91296 1.21651 0.94007 0.91127 1.01226 1.21581 0.97990 1.02329 0.90674 1.21027 0.95387 0.89589 1.00270 1.24291 1.10228 1.01584 0.97408 1.83657 1.64684 1.00337 1.10942 1.28966 0.98200 1.06312 0.90429 1.65974 1.19478 1.14880 1.20464 1.19082 1.00662 0.88347 0.94504 0.94352 0.90152 0.90505 0.88823 0.88972 0.94025 0.92371 0.95224 0.96285 0.79808 0.94020 0.75120 0.81831 0.79977 0.81392 0.75143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.48 71.98 0.68 -2.38 16 2 C 0.14 3.47 2.57 44.99 0.12 3.59 16 3 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 4 C -0.11 -2.38 4.75 30.59 0.15 -2.24 16 5 C -0.11 -3.61 5.21 30.59 0.16 -3.45 16 6 C 0.15 5.93 6.26 86.38 0.54 6.47 16 7 N -0.75 -39.29 5.60 -343.44 -1.92 -41.21 16 8 C -0.25 -14.06 9.99 84.03 0.84 -13.22 16 9 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 10 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 11 N -0.97 -60.95 13.06 21.65 0.28 -60.67 16 12 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 15 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 16 N -0.71 -16.74 4.48 -445.82 -2.00 -18.73 16 17 C 0.55 16.80 7.72 86.65 0.67 17.47 16 18 O -0.56 -22.11 15.44 -4.07 -0.06 -22.18 16 19 C -0.12 -3.14 5.92 -19.71 -0.12 -3.25 16 20 C -0.06 -1.01 9.49 22.42 0.21 -0.79 16 21 C -0.10 -1.27 10.02 22.20 0.22 -1.05 16 22 C -0.04 -0.56 10.05 22.43 0.23 -0.34 16 23 C -0.22 -4.39 6.55 22.91 0.15 -4.24 16 24 S 0.15 2.27 23.18 -56.49 -1.31 0.96 16 25 C 0.06 1.26 12.12 130.78 1.58 2.85 16 26 N -0.50 -14.79 9.43 -194.19 -1.83 -16.62 16 27 C 0.10 2.71 6.73 40.28 0.27 2.98 16 28 H 0.04 0.93 8.14 -2.38 -0.02 0.92 16 29 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.06 1.87 7.75 -2.39 -0.02 1.85 16 35 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.37 20.89 7.67 -92.71 -0.71 20.18 16 38 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.41 7.17 6.60 -92.71 -0.61 6.56 16 40 H 0.16 1.81 6.34 -2.91 -0.02 1.80 16 41 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 43 H 0.23 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -84.31 375.83 1.08 -83.23 By element: Atomic # 1 Polarization: 28.81 SS G_CDS: -0.28 Total: 28.53 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 6.17 Total: -1.79 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -5.47 Total: -137.23 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.06 Total: -22.18 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.96 kcal Total: -84.31 1.08 -83.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717668941.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.067 kcal (2) G-P(sol) polarization free energy of solvation -84.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds