Wall clock time and date at job start Tue Mar 31 2020 18:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46635 * 2 1 4 4 C 1.52998 * 109.46837 * 119.99602 * 2 1 3 5 5 C 1.53004 * 109.47253 * 185.00472 * 4 2 1 6 6 C 1.52998 * 109.47253 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46815 * 179.97438 * 6 5 4 8 8 C 1.36935 * 119.99915 * 179.97438 * 7 6 5 9 9 H 1.08005 * 120.00076 * 0.02562 * 8 7 6 10 10 C 1.38815 * 120.00206 * 180.02562 * 8 7 6 11 11 N 1.31614 * 119.99717 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00034 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47228 * 90.00231 * 12 10 8 14 14 H 1.48499 * 109.46858 * 210.00227 * 12 10 8 15 15 H 1.48503 * 109.47110 * 329.99933 * 12 10 8 16 16 N 1.46496 * 109.47301 * 239.99659 * 2 1 3 17 17 C 1.34776 * 119.99806 * 84.99919 * 16 2 1 18 18 O 1.21608 * 120.00169 * 0.02562 * 17 16 2 19 19 C 1.47395 * 119.99704 * 179.97438 * 17 16 2 20 20 C 1.38870 * 120.02102 * 0.02562 * 19 17 16 21 21 C 1.38236 * 120.46237 * 179.97438 * 20 19 17 22 22 C 1.37955 * 120.27290 * 359.97438 * 21 20 19 23 23 C 1.39178 * 120.45392 * 0.04763 * 22 21 20 24 24 S 1.76148 * 131.63703 * 179.97438 * 23 22 21 25 25 C 1.70688 * 90.71141 * 179.97438 * 24 23 22 26 26 N 1.28149 * 111.37820 * 0.02562 * 25 24 23 27 27 C 1.33649 * 118.02208 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47174 * 300.00316 * 1 2 3 29 29 H 1.08997 * 109.46597 * 60.00418 * 1 2 3 30 30 H 1.09000 * 109.46635 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47430 * 305.00353 * 4 2 1 32 32 H 1.08995 * 109.47425 * 65.00153 * 4 2 1 33 33 H 1.09001 * 109.46282 * 300.00228 * 5 4 2 34 34 H 1.08995 * 109.47166 * 59.99522 * 5 4 2 35 35 H 1.08998 * 109.46989 * 299.99669 * 6 5 4 36 36 H 1.08996 * 109.46893 * 60.00230 * 6 5 4 37 37 H 0.96998 * 120.00396 * 0.02562 * 7 6 5 38 38 H 0.97004 * 119.99949 * 179.97438 * 11 10 8 39 39 H 0.97000 * 120.00136 * 265.00215 * 16 2 1 40 40 H 1.08001 * 119.76909 * 0.02562 * 20 19 17 41 41 H 1.08003 * 119.86154 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.76719 * 180.02562 * 22 21 20 43 43 H 1.07998 * 124.30628 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3139 6 6 4.0749 -1.3349 2.5629 7 7 5.5350 -1.2319 2.6243 8 6 6.2187 -1.8061 3.6625 9 1 5.6817 -2.3353 4.4358 10 6 7.6022 -1.7082 3.7210 11 7 8.2566 -1.0629 2.7789 12 14 8.5349 -2.4921 5.1369 13 1 8.8973 -3.8870 4.7789 14 1 9.7703 -1.7136 5.4071 15 1 7.6788 -2.4988 6.3503 16 7 2.0185 -0.6907 -1.1961 17 6 2.1472 -0.0183 -2.3571 18 8 1.8584 1.1617 -2.4116 19 6 2.6391 -0.7131 -3.5603 20 6 2.9695 -2.0605 -3.4983 21 6 3.4312 -2.7212 -4.6214 22 6 3.5681 -2.0476 -5.8175 23 6 3.2446 -0.6970 -5.9074 24 16 3.3046 0.4335 -7.2570 25 6 2.7221 1.6894 -6.2586 26 7 2.5175 1.2782 -5.0622 27 6 2.7753 -0.0037 -4.7861 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2057 33 1 3.9995 -1.0727 0.4262 34 1 3.8532 0.4371 1.3574 35 1 3.6402 -0.8757 3.4507 36 1 3.7866 -2.3851 2.5187 37 1 6.0173 -0.7564 1.9300 38 1 9.2233 -0.9941 2.8200 39 1 2.2491 -1.6318 -1.1525 40 1 2.8642 -2.5961 -2.5664 41 1 3.6850 -3.7694 -4.5623 42 1 3.9292 -2.5720 -6.6899 43 1 2.5489 2.7017 -6.5925 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717668942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:02 Heat of formation + Delta-G solvation = 28.346427 kcal Electronic energy + Delta-G solvation = -25140.481547 eV Core-core repulsion = 21505.321356 eV Total energy + Delta-G solvation = -3635.160191 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.00976 -39.42687 -37.16129 -36.63988 -34.79937 -32.81597 -31.89483 -30.52594 -30.23896 -29.30094 -25.72333 -25.35887 -24.48004 -23.01577 -21.97933 -21.30112 -20.78884 -20.53114 -18.95874 -17.41675 -16.99751 -16.72602 -16.36437 -15.72845 -15.43746 -15.33500 -14.68742 -14.57785 -14.54509 -14.06406 -13.85927 -13.66961 -13.45028 -12.97985 -12.97103 -12.68232 -12.44984 -12.20508 -12.13867 -12.07394 -11.57456 -11.28823 -11.11975 -10.84828 -10.78176 -10.45302 -10.43013 -10.37530 -10.04018 -9.98713 -9.67273 -9.63889 -9.12257 -9.06118 -8.84863 -8.45998 -6.89523 -5.74127 -3.02851 -0.10702 0.49836 0.90900 1.35927 2.07852 2.69265 3.06381 3.44382 3.49206 3.51412 3.57834 3.68196 4.21548 4.46108 4.56435 4.60560 4.75865 4.81466 4.82754 5.05505 5.11342 5.18974 5.29575 5.45549 5.59230 5.59977 5.62685 5.66722 5.70516 5.81838 5.85474 5.99912 6.10651 6.14945 6.17964 6.23815 6.38553 6.43398 6.52719 6.89183 6.92369 7.34536 7.49013 7.71408 8.23063 8.44884 9.55566 10.15010 10.49262 11.48853 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.002464 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.914465 B =11362.777063 C =12604.076984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.122 4.122 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.070 0.930 10 C -0.016 4.016 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.719 5.719 17 C 0.553 3.447 18 O -0.507 6.507 19 C -0.079 4.079 20 C -0.069 4.069 21 C -0.107 4.107 22 C -0.047 4.047 23 C -0.191 4.191 24 S 0.091 5.909 25 C 0.072 3.928 26 N -0.437 5.437 27 C 0.129 3.871 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.016 0.984 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.398 0.602 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.136 0.864 43 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.942 -1.478 -21.832 27.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.370 4.370 9 H 0.088 0.912 10 C -0.212 4.212 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.218 1.218 15 H -0.208 1.208 16 N -0.372 5.372 17 C 0.339 3.661 18 O -0.382 6.382 19 C -0.085 4.085 20 C -0.090 4.090 21 C -0.129 4.129 22 C -0.070 4.070 23 C -0.310 4.310 24 S 0.345 5.655 25 C -0.233 4.233 26 N -0.148 5.148 27 C 0.006 3.994 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.035 0.965 36 H 0.034 0.966 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.233 0.767 40 H 0.159 0.841 41 H 0.162 0.838 42 H 0.154 0.846 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -16.063 -0.237 -22.357 27.530 hybrid contribution 0.854 -1.057 1.317 1.892 sum -15.209 -1.294 -21.040 25.993 Atomic orbital electron populations 1.22172 0.95430 1.01957 1.02449 1.21048 0.93589 0.97872 0.83605 0.89211 1.21853 0.96881 1.00739 0.96614 1.21738 0.93647 1.01529 0.99483 1.20647 0.86172 0.96401 0.94229 1.42390 1.00218 1.66204 1.29068 1.19243 0.89443 1.27042 1.01311 0.91224 1.24756 0.96470 1.01253 0.98678 1.69666 1.07180 1.46940 1.34462 0.86184 0.79524 0.78626 0.81839 1.21741 1.21764 1.20769 1.46021 1.67648 1.14006 1.09528 1.17933 0.78587 0.86816 0.82786 1.90851 1.48228 1.14710 1.84434 1.19629 1.03426 0.93497 0.91933 1.21302 0.95659 0.92508 0.99518 1.21107 0.99351 1.00762 0.91674 1.20510 0.97110 0.90515 0.98821 1.23894 1.09795 1.00196 0.97141 1.84003 1.66158 1.02355 1.13026 1.28436 0.99437 1.04566 0.90857 1.65960 1.16959 1.13607 1.18232 1.18763 0.99423 0.87941 0.93243 0.91508 0.92309 0.92559 0.90194 0.91426 0.92095 0.91916 0.96502 0.96584 0.78329 0.93532 0.76677 0.84072 0.83767 0.84627 0.77777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 9.48 37.16 0.35 -1.34 16 2 C 0.14 1.72 2.57 -67.93 -0.17 1.54 16 3 H 0.09 1.29 7.58 -51.93 -0.39 0.89 16 4 C -0.12 -1.47 4.75 -26.73 -0.13 -1.59 16 5 C -0.13 -2.02 5.22 -26.73 -0.14 -2.16 16 6 C 0.15 3.09 6.26 -4.04 -0.03 3.06 16 7 N -0.73 -19.15 5.60 -59.91 -0.34 -19.49 16 8 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 9 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 10 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 11 N -0.93 -28.83 13.06 55.49 0.72 -28.11 16 12 Si 0.91 22.68 29.55 -169.99 -5.02 17.65 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 N -0.72 -8.46 4.48 -54.89 -0.25 -8.71 16 17 C 0.55 8.00 7.72 -12.53 -0.10 7.90 16 18 O -0.51 -9.22 15.44 5.27 0.08 -9.14 16 19 C -0.08 -1.00 5.92 -104.39 -0.62 -1.62 16 20 C -0.07 -0.63 9.50 -39.35 -0.37 -1.00 16 21 C -0.11 -0.81 10.02 -39.69 -0.40 -1.20 16 22 C -0.05 -0.38 10.05 -39.34 -0.40 -0.78 16 23 C -0.19 -2.01 6.55 -38.60 -0.25 -2.26 16 24 S 0.09 0.74 23.18 -107.50 -2.49 -1.75 16 25 C 0.07 0.69 12.12 51.23 0.62 1.31 16 26 N -0.44 -6.11 9.43 -12.74 -0.12 -6.23 16 27 C 0.13 1.73 6.73 -84.89 -0.57 1.16 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.99 7.75 -51.93 -0.40 0.58 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 38 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.40 3.71 6.60 -40.82 -0.27 3.44 16 40 H 0.14 0.94 6.34 -52.49 -0.33 0.61 16 41 H 0.14 0.65 8.06 -52.48 -0.42 0.23 16 42 H 0.14 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.21 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -37.00 375.83 -10.10 -47.10 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.91 Total: 7.54 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.45 Total: -4.53 kcal Atomic # 7 Polarization: -62.56 SS G_CDS: 0.02 Total: -62.53 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.02 Total: 17.65 kcal Atomic # 16 Polarization: 0.74 SS G_CDS: -2.49 Total: -1.75 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.00 -10.10 -47.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717668942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.447 kcal (2) G-P(sol) polarization free energy of solvation -37.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds