Wall clock time and date at job start Tue Mar 31 2020 18:34:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09000 * 109.46635 * 2 1 4 4 C 1.52998 * 109.46837 * 119.99602 * 2 1 3 5 5 C 1.53004 * 109.47253 * 185.00472 * 4 2 1 6 6 C 1.52998 * 109.47253 * 180.02562 * 5 4 2 7 7 N 1.46502 * 109.46815 * 179.97438 * 6 5 4 8 8 C 1.36935 * 119.99915 * 179.97438 * 7 6 5 9 9 H 1.08005 * 120.00076 * 0.02562 * 8 7 6 10 10 C 1.38815 * 120.00206 * 180.02562 * 8 7 6 11 11 N 1.31614 * 119.99717 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00034 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47228 * 90.00231 * 12 10 8 14 14 H 1.48499 * 109.46858 * 210.00227 * 12 10 8 15 15 H 1.48503 * 109.47110 * 329.99933 * 12 10 8 16 16 N 1.46496 * 109.47301 * 239.99659 * 2 1 3 17 17 C 1.34776 * 119.99806 * 84.99919 * 16 2 1 18 18 O 1.21608 * 120.00169 * 0.02562 * 17 16 2 19 19 C 1.47395 * 119.99704 * 179.97438 * 17 16 2 20 20 C 1.38870 * 120.02102 * 0.02562 * 19 17 16 21 21 C 1.38236 * 120.46237 * 179.97438 * 20 19 17 22 22 C 1.37955 * 120.27290 * 359.97438 * 21 20 19 23 23 C 1.39178 * 120.45392 * 0.04763 * 22 21 20 24 24 S 1.76148 * 131.63703 * 179.97438 * 23 22 21 25 25 C 1.70688 * 90.71141 * 179.97438 * 24 23 22 26 26 N 1.28149 * 111.37820 * 0.02562 * 25 24 23 27 27 C 1.33649 * 118.02208 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.47174 * 300.00316 * 1 2 3 29 29 H 1.08997 * 109.46597 * 60.00418 * 1 2 3 30 30 H 1.09000 * 109.46635 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47430 * 305.00353 * 4 2 1 32 32 H 1.08995 * 109.47425 * 65.00153 * 4 2 1 33 33 H 1.09001 * 109.46282 * 300.00228 * 5 4 2 34 34 H 1.08995 * 109.47166 * 59.99522 * 5 4 2 35 35 H 1.08998 * 109.46989 * 299.99669 * 6 5 4 36 36 H 1.08996 * 109.46893 * 60.00230 * 6 5 4 37 37 H 0.96998 * 120.00396 * 0.02562 * 7 6 5 38 38 H 0.97004 * 119.99949 * 179.97438 * 11 10 8 39 39 H 0.97000 * 120.00136 * 265.00215 * 16 2 1 40 40 H 1.08001 * 119.76909 * 0.02562 * 20 19 17 41 41 H 1.08003 * 119.86154 * 180.02562 * 21 20 19 42 42 H 1.08005 * 119.76719 * 180.02562 * 22 21 20 43 43 H 1.07998 * 124.30628 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6132 1.3139 6 6 4.0749 -1.3349 2.5629 7 7 5.5350 -1.2319 2.6243 8 6 6.2187 -1.8061 3.6625 9 1 5.6817 -2.3353 4.4358 10 6 7.6022 -1.7082 3.7210 11 7 8.2566 -1.0629 2.7789 12 14 8.5349 -2.4921 5.1369 13 1 8.8973 -3.8870 4.7789 14 1 9.7703 -1.7136 5.4071 15 1 7.6788 -2.4988 6.3503 16 7 2.0185 -0.6907 -1.1961 17 6 2.1472 -0.0183 -2.3571 18 8 1.8584 1.1617 -2.4116 19 6 2.6391 -0.7131 -3.5603 20 6 2.9695 -2.0605 -3.4983 21 6 3.4312 -2.7212 -4.6214 22 6 3.5681 -2.0476 -5.8175 23 6 3.2446 -0.6970 -5.9074 24 16 3.3046 0.4335 -7.2570 25 6 2.7221 1.6894 -6.2586 26 7 2.5175 1.2782 -5.0622 27 6 2.7753 -0.0037 -4.7861 28 1 -0.3633 0.5139 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.6053 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2057 33 1 3.9995 -1.0727 0.4262 34 1 3.8532 0.4371 1.3574 35 1 3.6402 -0.8757 3.4507 36 1 3.7866 -2.3851 2.5187 37 1 6.0173 -0.7564 1.9300 38 1 9.2233 -0.9941 2.8200 39 1 2.2491 -1.6318 -1.1525 40 1 2.8642 -2.5961 -2.5664 41 1 3.6850 -3.7694 -4.5623 42 1 3.9292 -2.5720 -6.6899 43 1 2.5489 2.7017 -6.5925 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717668942.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:01 Heat of formation + Delta-G solvation = 2.751094 kcal Electronic energy + Delta-G solvation = -25141.591444 eV Core-core repulsion = 21505.321356 eV Total energy + Delta-G solvation = -3636.270088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82053 -40.40256 -37.96459 -37.81721 -36.48640 -34.24901 -33.18800 -31.77862 -30.94809 -30.63871 -27.24478 -26.15229 -25.36895 -24.68094 -22.90744 -22.36593 -22.05188 -21.54891 -19.77596 -19.11484 -18.22876 -17.54408 -17.25393 -16.67426 -16.52147 -16.30764 -16.04668 -15.79640 -15.58068 -15.31035 -15.25584 -15.00619 -14.58437 -14.42748 -13.86632 -13.61422 -13.41568 -13.19044 -13.11439 -13.01518 -12.92216 -12.76808 -12.39423 -12.28591 -12.23321 -12.07147 -11.85897 -11.71220 -11.50259 -11.17881 -11.01871 -10.92980 -10.48652 -10.10684 -9.82167 -9.16062 -9.00674 -7.95501 -5.25072 -0.85426 -0.21185 0.25237 0.63453 1.36461 1.46979 1.49381 1.57919 1.77445 2.12994 2.55998 2.73624 3.01566 3.38183 3.47712 3.64193 3.80450 3.90521 3.99582 4.10060 4.17242 4.17985 4.28751 4.38236 4.47437 4.57318 4.59724 4.68379 4.82259 4.86211 4.92246 4.97618 5.01829 5.02223 5.12838 5.18912 5.30201 5.37148 5.43119 5.50606 5.55501 5.60016 6.26763 6.51560 6.65839 7.23886 7.32119 8.09486 8.31454 9.28388 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012627 B = 0.002464 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.914465 B =11362.777063 C =12604.076984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.059 0.941 4 C -0.107 4.107 5 C -0.114 4.114 6 C 0.151 3.849 7 N -0.752 5.752 8 C -0.246 4.246 9 H 0.078 0.922 10 C -0.080 4.080 11 N -0.973 5.973 12 Si 0.977 3.023 13 H -0.284 1.284 14 H -0.297 1.297 15 H -0.268 1.268 16 N -0.708 5.708 17 C 0.548 3.452 18 O -0.559 6.559 19 C -0.119 4.119 20 C -0.059 4.059 21 C -0.104 4.104 22 C -0.041 4.041 23 C -0.216 4.216 24 S 0.149 5.851 25 C 0.064 3.936 26 N -0.496 5.496 27 C 0.097 3.903 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.019 0.981 36 H 0.030 0.970 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.411 0.589 40 H 0.164 0.836 41 H 0.183 0.817 42 H 0.169 0.831 43 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.474 -4.207 -22.200 27.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.040 3.960 3 H 0.077 0.923 4 C -0.146 4.146 5 C -0.152 4.152 6 C 0.025 3.975 7 N -0.394 5.394 8 C -0.378 4.378 9 H 0.096 0.904 10 C -0.272 4.272 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.210 1.210 14 H -0.223 1.223 15 H -0.193 1.193 16 N -0.361 5.361 17 C 0.336 3.664 18 O -0.438 6.438 19 C -0.126 4.126 20 C -0.080 4.080 21 C -0.126 4.126 22 C -0.063 4.063 23 C -0.335 4.335 24 S 0.403 5.597 25 C -0.239 4.239 26 N -0.208 5.208 27 C -0.026 4.026 28 H 0.099 0.901 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.037 0.963 36 H 0.048 0.952 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.249 0.751 40 H 0.182 0.818 41 H 0.200 0.800 42 H 0.186 0.814 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -16.640 -3.013 -22.715 28.318 hybrid contribution 0.995 -0.226 1.334 1.680 sum -15.645 -3.240 -21.381 26.690 Atomic orbital electron populations 1.22087 0.93754 1.03150 1.02117 1.20976 0.94805 0.96424 0.83755 0.92261 1.21750 0.93480 1.02439 0.96883 1.21599 0.96559 0.99550 0.97467 1.20855 0.83093 0.97548 0.96028 1.42674 1.02595 1.65893 1.28224 1.19686 0.90006 1.26287 1.01788 0.90385 1.25642 0.97572 1.02463 1.01499 1.69837 1.07058 1.48853 1.36595 0.85093 0.77792 0.77548 0.79059 1.21046 1.22339 1.19301 1.45942 1.66875 1.14494 1.08811 1.18361 0.77803 0.86407 0.83840 1.90805 1.50769 1.16899 1.85325 1.19709 1.06475 0.95087 0.91296 1.21652 0.94015 0.91122 1.01224 1.21581 0.97995 1.02329 0.90668 1.21024 0.95383 0.89593 1.00277 1.24288 1.10228 1.01581 0.97400 1.83661 1.64702 1.00365 1.10925 1.28963 0.98197 1.06306 0.90424 1.65970 1.19472 1.14888 1.20463 1.19085 1.00664 0.88348 0.94499 0.90150 0.94356 0.90506 0.88970 0.88824 0.92377 0.94016 0.96276 0.95209 0.79806 0.94034 0.75119 0.81832 0.79980 0.81391 0.75143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.48 71.99 0.68 -2.38 16 2 C 0.14 3.47 2.57 44.99 0.12 3.58 16 3 H 0.06 1.80 7.58 -2.39 -0.02 1.79 16 4 C -0.11 -2.38 4.75 30.60 0.15 -2.23 16 5 C -0.11 -3.60 5.22 30.60 0.16 -3.44 16 6 C 0.15 5.92 6.26 86.38 0.54 6.46 16 7 N -0.75 -39.25 5.60 -343.45 -1.92 -41.17 16 8 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 9 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 11 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 12 Si 0.98 46.46 29.55 68.60 2.03 48.49 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 14 H -0.30 -14.26 7.11 99.48 0.71 -13.55 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 16 N -0.71 -16.73 4.48 -445.83 -2.00 -18.72 16 17 C 0.55 16.79 7.72 86.65 0.67 17.46 16 18 O -0.56 -22.11 15.44 -4.06 -0.06 -22.17 16 19 C -0.12 -3.14 5.92 -19.71 -0.12 -3.25 16 20 C -0.06 -1.01 9.50 22.42 0.21 -0.79 16 21 C -0.10 -1.27 10.02 22.20 0.22 -1.05 16 22 C -0.04 -0.56 10.05 22.43 0.23 -0.34 16 23 C -0.22 -4.39 6.55 22.91 0.15 -4.24 16 24 S 0.15 2.27 23.18 -56.49 -1.31 0.96 16 25 C 0.06 1.27 12.12 130.78 1.58 2.85 16 26 N -0.50 -14.78 9.43 -194.19 -1.83 -16.61 16 27 C 0.10 2.70 6.73 40.28 0.27 2.98 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.37 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.86 7.75 -2.39 -0.02 1.84 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.37 20.88 7.67 -92.71 -0.71 20.17 16 38 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 39 H 0.41 7.16 6.60 -92.71 -0.61 6.55 16 40 H 0.16 1.81 6.34 -2.91 -0.02 1.80 16 41 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 42 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 43 H 0.23 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -84.30 375.83 1.08 -83.22 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: -0.28 Total: 28.36 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 6.17 Total: -1.73 kcal Atomic # 7 Polarization: -131.67 SS G_CDS: -5.47 Total: -137.14 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.06 Total: -22.17 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Atomic # 16 Polarization: 2.27 SS G_CDS: -1.31 Total: 0.96 kcal Total: -84.30 1.08 -83.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717668942.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.973 kcal (2) G-P(sol) polarization free energy of solvation -84.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds