Wall clock time and date at job start Tue Mar 31 2020 16:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28064 * 124.23905 * 2 1 4 4 C 1.34411 * 117.91478 * 180.02562 * 3 2 1 5 5 C 1.41244 * 129.48023 * 179.97438 * 4 3 2 6 6 C 1.35750 * 120.63571 * 180.02562 * 5 4 3 7 7 C 1.40193 * 120.61459 * 359.97438 * 6 5 4 8 8 C 1.47594 * 120.12645 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99865 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99719 * 0.02562 * 8 7 6 11 11 C 1.46501 * 119.99394 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47658 * 324.99250 * 11 10 8 13 13 C 1.52995 * 109.47287 * 84.99968 * 11 10 8 14 14 C 1.53012 * 109.46575 * 204.99658 * 11 10 8 15 15 N 1.46501 * 109.47022 * 54.99911 * 14 11 10 16 16 C 1.46499 * 119.99971 * 270.00061 * 15 14 11 17 17 C 1.36942 * 119.99755 * 89.99847 * 15 14 11 18 18 H 1.08001 * 119.99940 * 339.68576 * 17 15 14 19 19 C 1.38807 * 119.99734 * 159.95991 * 17 15 14 20 20 N 1.31622 * 119.99839 * 344.80319 * 19 17 15 21 21 Si 1.86803 * 120.00013 * 164.80411 * 19 17 15 22 22 H 1.48492 * 109.47008 * 59.99905 * 21 19 17 23 23 H 1.48496 * 109.46910 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46666 * 299.99670 * 21 19 17 25 25 C 1.39183 * 119.74955 * 0.23077 * 7 6 5 26 26 C 1.38911 * 119.84478 * 359.51828 * 25 7 6 27 27 S 1.70643 * 124.24429 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47411 * 269.96047 * 1 2 3 29 29 H 1.08997 * 109.47691 * 29.96318 * 1 2 3 30 30 H 1.09006 * 109.47033 * 149.96024 * 1 2 3 31 31 H 1.07997 * 119.68194 * 0.03735 * 5 4 3 32 32 H 1.07999 * 119.69569 * 179.97438 * 6 5 4 33 33 H 0.96990 * 120.00385 * 359.97438 * 10 8 7 34 34 H 1.09008 * 109.46832 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.47331 * 299.99299 * 13 11 10 36 36 H 1.08996 * 109.47351 * 59.99653 * 13 11 10 37 37 H 1.08993 * 109.47223 * 294.99918 * 14 11 10 38 38 H 1.09005 * 109.46582 * 174.99800 * 14 11 10 39 39 H 1.09000 * 109.46580 * 264.76993 * 16 15 14 40 40 H 1.08994 * 109.47256 * 24.76829 * 16 15 14 41 41 H 1.09001 * 109.47104 * 144.77198 * 16 15 14 42 42 H 0.97008 * 119.99494 * 180.02562 * 20 19 17 43 43 H 1.07998 * 120.07668 * 179.71996 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5634 0.9106 -0.0005 5 6 4.5761 1.8953 -0.0011 6 6 5.8863 1.5401 -0.0021 7 6 6.2597 0.1888 -0.0021 8 6 7.6875 -0.1853 -0.0037 9 8 8.0087 -1.3580 -0.0041 10 7 8.6351 0.7731 -0.0048 11 6 10.0523 0.4017 -0.0070 12 1 10.1913 -0.5048 0.5820 13 6 10.5116 0.1513 -1.4448 14 6 10.8779 1.5371 0.6017 15 7 10.3599 1.8574 1.9342 16 6 9.3098 2.8672 2.0886 17 6 10.8573 1.2128 3.0353 18 1 11.3691 0.2684 2.9228 19 6 10.6988 1.7705 4.2964 20 7 10.3487 3.0335 4.4183 21 14 10.9823 0.7286 5.8208 22 1 12.3795 0.2259 5.8239 23 1 10.7495 1.5528 7.0339 24 1 10.0424 -0.4211 5.8162 25 6 5.2789 -0.7988 -0.0058 26 6 3.9369 -0.4402 0.0005 27 16 2.4672 -1.4106 -0.0006 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3634 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5145 31 1 4.3055 2.9408 -0.0006 32 1 6.6482 2.3055 -0.0030 33 1 8.3789 1.7085 -0.0049 34 1 11.5662 -0.1246 -1.4464 35 1 9.9236 -0.6575 -1.8784 36 1 10.3726 1.0578 -2.0337 37 1 10.8097 2.4183 -0.0361 38 1 11.9195 1.2262 0.6818 39 1 9.7636 3.8303 2.3224 40 1 8.7440 2.9478 1.1605 41 1 8.6407 2.5747 2.8979 42 1 10.2383 3.4233 5.2997 43 1 5.5606 -1.8414 -0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722906610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:58 Heat of formation + Delta-G solvation = 45.488825 kcal Electronic energy + Delta-G solvation = -25910.494221 eV Core-core repulsion = 22276.077380 eV Total energy + Delta-G solvation = -3634.416841 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -40.73257 -39.44312 -37.08356 -36.31465 -34.15906 -32.24620 -31.38620 -31.14060 -30.31721 -28.39502 -26.24188 -25.65446 -24.51015 -23.53346 -21.88232 -21.38681 -20.53673 -20.01284 -18.79210 -17.50761 -16.87063 -16.11889 -15.91056 -15.43688 -15.25930 -15.04659 -14.59313 -14.14447 -14.11779 -13.77235 -13.64307 -13.37188 -13.32040 -13.22290 -12.91888 -12.63844 -12.49099 -12.19320 -12.04267 -11.57740 -11.45042 -11.34034 -11.07765 -10.82661 -10.68391 -10.63764 -10.38609 -10.22881 -10.05230 -9.90589 -9.87012 -9.64285 -8.87247 -8.67532 -8.48256 -8.30229 -6.80125 -5.74738 -3.18350 -0.02110 0.95630 0.98796 1.44692 1.85179 3.05143 3.39869 3.45189 3.46856 3.49016 3.57340 3.80256 4.37069 4.49821 4.65470 4.78930 4.89536 4.96870 5.03883 5.08280 5.24993 5.31471 5.44351 5.48518 5.59917 5.63724 5.74174 5.89347 5.91338 5.98048 6.05611 6.09888 6.14786 6.39418 6.42728 6.48916 6.54906 6.75741 6.99561 7.29117 7.34915 7.63687 7.79411 7.88694 8.35244 8.54418 9.20636 9.83823 10.30158 11.30385 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.003111 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.936662 B = 8997.231858 C = 9834.661399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.090 3.910 3 N -0.471 5.471 4 C 0.102 3.898 5 C -0.070 4.070 6 C -0.073 4.073 7 C -0.108 4.108 8 C 0.558 3.442 9 O -0.544 6.544 10 N -0.694 5.694 11 C 0.115 3.885 12 H 0.086 0.914 13 C -0.159 4.159 14 C 0.142 3.858 15 N -0.599 5.599 16 C 0.168 3.832 17 C -0.253 4.253 18 H 0.068 0.932 19 C 0.002 3.998 20 N -0.908 5.908 21 Si 0.902 3.098 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.009 4.009 26 C -0.193 4.193 27 S 0.106 5.894 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.397 0.603 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.031 0.969 40 H -0.011 1.011 41 H 0.043 0.957 42 H 0.253 0.747 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.581 -3.913 -12.883 21.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.193 4.193 3 N -0.185 5.185 4 C -0.019 4.019 5 C -0.091 4.091 6 C -0.094 4.094 7 C -0.115 4.115 8 C 0.344 3.656 9 O -0.423 6.423 10 N -0.345 5.345 11 C 0.008 3.992 12 H 0.105 0.895 13 C -0.218 4.218 14 C 0.014 3.986 15 N -0.321 5.321 16 C 0.023 3.977 17 C -0.383 4.383 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.554 5.554 21 Si 0.732 3.268 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.211 1.211 25 C -0.032 4.032 26 C -0.312 4.312 27 S 0.362 5.638 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.234 0.766 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.049 0.951 40 H 0.008 0.992 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.918 -5.151 -12.698 21.771 hybrid contribution 0.598 0.666 1.049 1.379 sum -16.320 -4.485 -11.649 20.546 Atomic orbital electron populations 1.20574 0.84741 1.04573 1.04396 1.26822 1.01878 0.90993 0.99654 1.66142 1.04185 1.31297 1.16874 1.19288 0.89066 0.91715 1.01871 1.20267 0.90115 0.98707 0.99969 1.20893 0.96141 0.95404 0.96959 1.20026 0.93864 0.93521 1.04068 1.17943 0.84863 0.85900 0.76903 1.90750 1.82744 1.18110 1.50739 1.45954 1.06580 1.09156 1.72818 1.21995 0.79672 1.02011 0.95485 0.89545 1.22127 1.01330 1.01268 0.97036 1.21063 0.96105 0.94117 0.87328 1.43837 1.41547 1.45730 1.00978 1.20827 0.89770 0.92758 0.94307 1.19126 1.33143 1.00955 0.85064 0.91390 1.24919 1.01228 0.95445 0.97970 1.70062 1.52471 1.10514 1.22312 0.86363 0.78146 0.79622 0.82633 1.20905 1.21656 1.21119 1.20401 0.88084 1.00530 0.94211 1.23706 0.98736 0.96682 1.12071 1.83940 0.95481 1.10291 1.74083 0.89034 0.88907 0.89680 0.84097 0.84200 0.76598 0.91789 0.92835 0.92970 0.94036 0.91715 0.95057 0.99230 0.93785 0.93730 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.44 36.00 0.38 -0.11 16 2 C 0.09 0.93 7.29 -13.85 -0.10 0.83 16 3 N -0.47 -6.11 10.56 -8.96 -0.09 -6.20 16 4 C 0.10 1.39 7.00 -84.88 -0.59 0.80 16 5 C -0.07 -0.87 10.03 -39.33 -0.39 -1.27 16 6 C -0.07 -0.93 9.44 -39.74 -0.38 -1.31 16 7 C -0.11 -1.62 5.87 -105.00 -0.62 -2.24 16 8 C 0.56 9.79 7.73 -12.44 -0.10 9.70 16 9 O -0.54 -11.16 16.00 5.28 0.08 -11.08 16 10 N -0.69 -11.52 4.47 -54.82 -0.25 -11.76 16 11 C 0.12 2.01 2.88 -67.93 -0.20 1.81 16 12 H 0.09 1.78 7.58 -51.93 -0.39 1.38 16 13 C -0.16 -2.23 9.48 37.16 0.35 -1.88 16 14 C 0.14 2.69 5.29 -4.03 -0.02 2.67 16 15 N -0.60 -14.22 2.78 -181.11 -0.50 -14.72 16 16 C 0.17 3.84 8.52 59.85 0.51 4.35 16 17 C -0.25 -6.85 9.67 -15.06 -0.15 -7.00 16 18 H 0.07 1.83 7.87 -52.49 -0.41 1.41 16 19 C 0.00 0.07 5.06 -17.43 -0.09 -0.02 16 20 N -0.91 -26.08 10.66 55.49 0.59 -25.49 16 21 Si 0.90 22.15 29.58 -169.99 -5.03 17.12 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -7.06 7.11 56.52 0.40 -6.65 16 25 C -0.01 -0.13 9.62 -38.98 -0.37 -0.51 16 26 C -0.19 -2.61 6.54 -38.61 -0.25 -2.86 16 27 S 0.11 1.11 23.11 -107.50 -2.48 -1.38 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.14 1.55 6.38 -52.49 -0.33 1.22 16 33 H 0.40 5.94 4.22 -40.82 -0.17 5.77 16 34 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 38 H 0.06 1.23 8.04 -51.93 -0.42 0.81 16 39 H 0.03 0.79 7.40 -51.93 -0.38 0.40 16 40 H -0.01 -0.19 5.76 -51.93 -0.30 -0.49 16 41 H 0.04 1.12 7.21 -51.93 -0.37 0.74 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.14 2.04 7.64 -52.49 -0.40 1.64 16 LS Contribution 368.73 15.07 5.56 5.56 Total: -1.00 -33.03 368.73 -9.84 -42.88 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.70 Total: 2.13 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -2.02 Total: 2.96 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.25 Total: -58.18 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.48 Total: -1.38 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.03 -9.84 -42.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722906610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.365 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds