Wall clock time and date at job start Tue Mar 31 2020 16:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.28064 * 124.23905 * 2 1 4 4 C 1.34411 * 117.91478 * 180.02562 * 3 2 1 5 5 C 1.41244 * 129.48023 * 179.97438 * 4 3 2 6 6 C 1.35750 * 120.63571 * 180.02562 * 5 4 3 7 7 C 1.40193 * 120.61459 * 359.97438 * 6 5 4 8 8 C 1.47594 * 120.12645 * 179.97438 * 7 6 5 9 9 O 1.21592 * 119.99865 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99719 * 0.02562 * 8 7 6 11 11 C 1.46501 * 119.99394 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.47658 * 324.99250 * 11 10 8 13 13 C 1.52995 * 109.47287 * 84.99968 * 11 10 8 14 14 C 1.53012 * 109.46575 * 204.99658 * 11 10 8 15 15 N 1.46501 * 109.47022 * 54.99911 * 14 11 10 16 16 C 1.46499 * 119.99971 * 270.00061 * 15 14 11 17 17 C 1.36942 * 119.99755 * 89.99847 * 15 14 11 18 18 H 1.08001 * 119.99940 * 339.68576 * 17 15 14 19 19 C 1.38807 * 119.99734 * 159.95991 * 17 15 14 20 20 N 1.31622 * 119.99839 * 344.80319 * 19 17 15 21 21 Si 1.86803 * 120.00013 * 164.80411 * 19 17 15 22 22 H 1.48492 * 109.47008 * 59.99905 * 21 19 17 23 23 H 1.48496 * 109.46910 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46666 * 299.99670 * 21 19 17 25 25 C 1.39183 * 119.74955 * 0.23077 * 7 6 5 26 26 C 1.38911 * 119.84478 * 359.51828 * 25 7 6 27 27 S 1.70643 * 124.24429 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47411 * 269.96047 * 1 2 3 29 29 H 1.08997 * 109.47691 * 29.96318 * 1 2 3 30 30 H 1.09006 * 109.47033 * 149.96024 * 1 2 3 31 31 H 1.07997 * 119.68194 * 0.03735 * 5 4 3 32 32 H 1.07999 * 119.69569 * 179.97438 * 6 5 4 33 33 H 0.96990 * 120.00385 * 359.97438 * 10 8 7 34 34 H 1.09008 * 109.46832 * 179.97438 * 13 11 10 35 35 H 1.08993 * 109.47331 * 299.99299 * 13 11 10 36 36 H 1.08996 * 109.47351 * 59.99653 * 13 11 10 37 37 H 1.08993 * 109.47223 * 294.99918 * 14 11 10 38 38 H 1.09005 * 109.46582 * 174.99800 * 14 11 10 39 39 H 1.09000 * 109.46580 * 264.76993 * 16 15 14 40 40 H 1.08994 * 109.47256 * 24.76829 * 16 15 14 41 41 H 1.09001 * 109.47104 * 144.77198 * 16 15 14 42 42 H 0.97008 * 119.99494 * 180.02562 * 20 19 17 43 43 H 1.07998 * 120.07668 * 179.71996 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2275 1.0587 0.0000 4 6 3.5634 0.9106 -0.0005 5 6 4.5761 1.8953 -0.0011 6 6 5.8863 1.5401 -0.0021 7 6 6.2597 0.1888 -0.0021 8 6 7.6875 -0.1853 -0.0037 9 8 8.0087 -1.3580 -0.0041 10 7 8.6351 0.7731 -0.0048 11 6 10.0523 0.4017 -0.0070 12 1 10.1913 -0.5048 0.5820 13 6 10.5116 0.1513 -1.4448 14 6 10.8779 1.5371 0.6017 15 7 10.3599 1.8574 1.9342 16 6 9.3098 2.8672 2.0886 17 6 10.8573 1.2128 3.0353 18 1 11.3691 0.2684 2.9228 19 6 10.6988 1.7705 4.2964 20 7 10.3487 3.0335 4.4183 21 14 10.9823 0.7286 5.8208 22 1 12.3795 0.2259 5.8239 23 1 10.7495 1.5528 7.0339 24 1 10.0424 -0.4211 5.8162 25 6 5.2789 -0.7988 -0.0058 26 6 3.9369 -0.4402 0.0005 27 16 2.4672 -1.4106 -0.0006 28 1 -0.3634 -0.0007 1.0276 29 1 -0.3634 0.8903 -0.5132 30 1 -0.3633 -0.8897 -0.5145 31 1 4.3055 2.9408 -0.0006 32 1 6.6482 2.3055 -0.0030 33 1 8.3789 1.7085 -0.0049 34 1 11.5662 -0.1246 -1.4464 35 1 9.9236 -0.6575 -1.8784 36 1 10.3726 1.0578 -2.0337 37 1 10.8097 2.4183 -0.0361 38 1 11.9195 1.2262 0.6818 39 1 9.7636 3.8303 2.3224 40 1 8.7440 2.9478 1.1605 41 1 8.6407 2.5747 2.8979 42 1 10.2383 3.4233 5.2997 43 1 5.5606 -1.8414 -0.0103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722906610.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:57:57 Heat of formation + Delta-G solvation = 25.068635 kcal Electronic energy + Delta-G solvation = -25911.379707 eV Core-core repulsion = 22276.077380 eV Total energy + Delta-G solvation = -3635.302327 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.77397 -40.70205 -38.33201 -37.72406 -35.85553 -33.44056 -32.71481 -32.33812 -31.68211 -29.32827 -28.01517 -27.42312 -25.46536 -24.68247 -23.42787 -22.42922 -21.97118 -21.30001 -19.80491 -18.82030 -18.61881 -17.38279 -16.95281 -16.94238 -16.46120 -16.30766 -15.93721 -15.59021 -15.35947 -15.15553 -15.06915 -14.52744 -14.41551 -14.24383 -14.04137 -13.69653 -13.62450 -13.48399 -13.21338 -13.11450 -12.81057 -12.73482 -12.53551 -12.45428 -12.30276 -12.02883 -12.02084 -11.86649 -11.76999 -11.33233 -11.07171 -10.78383 -10.64294 -10.09827 -9.73313 -9.26217 -8.76742 -7.83372 -5.27499 -0.99854 -0.02402 0.08013 0.55962 0.84538 1.42475 1.45675 1.51175 1.88757 2.18810 2.49567 2.65258 2.77487 3.29068 3.42415 3.57881 3.70833 3.82835 3.97049 4.02069 4.11301 4.28487 4.37714 4.49644 4.57065 4.64904 4.66780 4.76633 4.78738 4.85074 4.91582 4.95260 5.01673 5.06786 5.13265 5.17773 5.30609 5.41495 5.44060 5.60131 5.65030 5.75718 6.31898 6.45715 6.55283 7.16171 7.20368 7.88915 8.28015 9.18527 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013382 B = 0.003111 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.936662 B = 8997.231858 C = 9834.661399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.100 3.900 3 N -0.500 5.500 4 C 0.095 3.905 5 C -0.073 4.073 6 C -0.068 4.068 7 C -0.130 4.130 8 C 0.556 3.444 9 O -0.583 6.583 10 N -0.690 5.690 11 C 0.124 3.876 12 H 0.049 0.951 13 C -0.147 4.147 14 C 0.142 3.858 15 N -0.614 5.614 16 C 0.181 3.819 17 C -0.257 4.257 18 H 0.063 0.937 19 C -0.049 4.049 20 N -0.932 5.932 21 Si 0.956 3.044 22 H -0.275 1.275 23 H -0.292 1.292 24 H -0.290 1.290 25 C -0.013 4.013 26 C -0.221 4.221 27 S 0.140 5.860 28 H 0.108 0.892 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.405 0.595 34 H 0.078 0.922 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.006 0.994 40 H 0.037 0.963 41 H 0.010 0.990 42 H 0.247 0.753 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.210 -3.697 -14.131 23.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.184 4.184 3 N -0.215 5.215 4 C -0.027 4.027 5 C -0.094 4.094 6 C -0.089 4.089 7 C -0.136 4.136 8 C 0.343 3.657 9 O -0.465 6.465 10 N -0.341 5.341 11 C 0.016 3.984 12 H 0.067 0.933 13 C -0.206 4.206 14 C 0.015 3.985 15 N -0.336 5.336 16 C 0.037 3.963 17 C -0.387 4.387 18 H 0.081 0.919 19 C -0.244 4.244 20 N -0.580 5.580 21 Si 0.785 3.215 22 H -0.200 1.200 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.036 4.036 26 C -0.339 4.339 27 S 0.397 5.603 28 H 0.126 0.874 29 H 0.119 0.881 30 H 0.129 0.871 31 H 0.180 0.820 32 H 0.175 0.825 33 H 0.244 0.756 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.025 0.975 40 H 0.055 0.945 41 H 0.029 0.971 42 H 0.056 0.944 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -18.538 -4.940 -13.981 23.739 hybrid contribution 0.958 0.529 1.366 1.751 sum -17.580 -4.411 -12.615 22.083 Atomic orbital electron populations 1.20848 0.81505 1.06210 1.05893 1.27686 1.03651 0.90359 0.96657 1.66248 1.03814 1.32355 1.19114 1.19641 0.89913 0.92013 1.01129 1.20525 0.89716 0.99697 0.99432 1.21004 0.96867 0.94657 0.96374 1.19881 0.92369 0.94816 1.06570 1.18314 0.85972 0.85394 0.75974 1.90719 1.83509 1.19628 1.52664 1.45892 1.06232 1.09498 1.72453 1.21749 0.80031 0.99552 0.97028 0.93308 1.22017 1.01893 1.02109 0.94557 1.21248 0.96140 0.95588 0.85495 1.44047 1.41995 1.45569 1.02023 1.20582 0.89199 0.91104 0.95459 1.19375 1.32132 1.00825 0.86411 0.91909 1.25539 1.02190 0.96424 1.00248 1.70198 1.54015 1.11546 1.22198 0.85513 0.78118 0.77997 0.79886 1.20042 1.21795 1.21711 1.20388 0.88773 1.00169 0.94308 1.23920 0.99359 0.97799 1.12831 1.83811 0.93599 1.09607 1.73296 0.87365 0.88116 0.87149 0.81956 0.82499 0.75609 0.90334 0.93730 0.90581 0.91088 0.91754 0.97548 0.94463 0.97127 0.94358 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.44 71.24 0.74 0.02 16 2 C 0.10 1.83 7.29 88.66 0.65 2.48 16 3 N -0.50 -12.17 10.56 -182.20 -1.92 -14.10 16 4 C 0.09 2.50 7.00 39.95 0.28 2.78 16 5 C -0.07 -1.74 10.03 22.43 0.23 -1.52 16 6 C -0.07 -1.68 9.44 22.17 0.21 -1.47 16 7 C -0.13 -3.93 5.87 -20.11 -0.12 -4.05 16 8 C 0.56 19.76 7.73 86.71 0.67 20.43 16 9 O -0.58 -24.74 16.00 -4.01 -0.06 -24.80 16 10 N -0.69 -22.41 4.47 -445.62 -1.99 -24.40 16 11 C 0.12 4.21 2.88 44.99 0.13 4.33 16 12 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 13 C -0.15 -3.87 9.48 71.98 0.68 -3.19 16 14 C 0.14 5.18 5.29 86.38 0.46 5.63 16 15 N -0.61 -28.98 2.78 -726.92 -2.02 -31.01 16 16 C 0.18 8.23 8.52 127.77 1.09 9.32 16 17 C -0.26 -14.02 9.67 84.03 0.81 -13.21 16 18 H 0.06 3.42 7.87 -2.91 -0.02 3.40 16 19 C -0.05 -2.74 5.06 84.86 0.43 -2.31 16 20 N -0.93 -54.42 10.66 21.65 0.23 -54.19 16 21 Si 0.96 46.19 29.58 68.60 2.03 48.22 16 22 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 23 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 24 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 25 C -0.01 -0.39 9.62 22.66 0.22 -0.17 16 26 C -0.22 -5.85 6.54 22.90 0.15 -5.70 16 27 S 0.14 2.71 23.11 -56.49 -1.31 1.40 16 28 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 0.42 8.14 -2.38 -0.02 0.40 16 31 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16 32 H 0.16 3.19 6.38 -2.91 -0.02 3.17 16 33 H 0.41 11.42 4.22 -92.72 -0.39 11.03 16 34 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 38 H 0.06 2.36 8.04 -2.38 -0.02 2.34 16 39 H 0.01 0.32 7.40 -2.39 -0.02 0.30 16 40 H 0.04 1.29 5.76 -2.39 -0.01 1.28 16 41 H 0.01 0.52 7.21 -2.39 -0.02 0.50 16 42 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 43 H 0.14 4.08 7.64 -2.91 -0.02 4.05 16 Total: -1.00 -73.37 368.73 2.22 -71.14 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.65 Total: 14.35 kcal Atomic # 6 Polarization: 6.75 SS G_CDS: 6.62 Total: 13.37 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -5.71 Total: -123.69 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.06 Total: -24.80 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -1.31 Total: 1.40 kcal Total: -73.37 2.22 -71.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722906610.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.214 kcal (2) G-P(sol) polarization free energy of solvation -73.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds