Wall clock time and date at job start Tue Mar 31 2020 17:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46953 * 2 1 4 4 N 1.46497 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.36944 * 119.99915 * 275.31370 * 4 3 2 6 6 H 1.07992 * 120.00015 * 37.57158 * 5 4 3 7 7 C 1.38813 * 119.99691 * 217.57880 * 5 4 3 8 8 N 1.31612 * 120.00399 * 21.42559 * 7 5 4 9 9 Si 1.86796 * 119.99703 * 201.43153 * 7 5 4 10 10 H 1.48504 * 109.47197 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47448 * 119.99734 * 9 7 5 12 12 H 1.48505 * 109.47137 * 239.99793 * 9 7 5 13 13 C 1.46499 * 120.00451 * 95.30894 * 4 3 2 14 14 C 1.52999 * 109.47439 * 270.00507 * 13 4 3 15 15 N 1.46497 * 109.47352 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00264 * 179.97438 * 15 14 13 17 17 O 1.21620 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.47381 * 120.00324 * 179.97438 * 16 15 14 19 19 N 1.29686 * 121.82827 * 359.97438 * 18 16 15 20 20 S 1.56009 * 111.74006 * 179.46947 * 19 18 16 21 21 C 1.76252 * 97.56002 * 0.53922 * 20 19 18 22 22 C 1.38700 * 134.18378 * 179.36575 * 21 20 19 23 23 C 1.36797 * 119.62819 * 179.97438 * 22 21 20 24 24 C 1.38913 * 120.30989 * 0.02562 * 23 22 21 25 25 C 1.36332 * 121.03217 * 359.97438 * 24 23 22 26 26 C 1.40417 * 119.95977 * 0.28446 * 25 24 23 27 27 H 1.09000 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46983 * 299.99426 * 1 2 3 29 29 H 1.09000 * 109.47310 * 59.99860 * 1 2 3 30 30 H 1.09003 * 109.46983 * 240.00574 * 2 1 3 31 31 H 1.09000 * 109.47310 * 120.00140 * 2 1 3 32 32 H 1.08996 * 109.47156 * 60.00345 * 3 2 1 33 33 H 1.09000 * 109.47227 * 300.00191 * 3 2 1 34 34 H 0.96998 * 120.00374 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47506 * 149.99796 * 13 4 3 36 36 H 1.09003 * 109.46488 * 30.00278 * 13 4 3 37 37 H 1.09004 * 109.47066 * 59.99419 * 14 13 4 38 38 H 1.09008 * 109.46917 * 299.99838 * 14 13 4 39 39 H 0.96998 * 119.99929 * 359.97438 * 15 14 13 40 40 H 1.07999 * 120.18804 * 0.02825 * 22 21 20 41 41 H 1.08001 * 119.84847 * 180.02562 * 23 22 21 42 42 H 1.07991 * 119.48398 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.02210 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1902 1.3326 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0511 1.3716 8 7 5.6024 3.1239 0.6480 9 14 6.5990 1.4951 2.6565 10 1 6.0964 0.2709 3.3302 11 1 7.8976 1.2012 1.9991 12 1 6.7858 2.5717 3.6622 13 6 4.2370 1.5602 -1.2641 14 6 4.4918 0.1649 -1.8378 15 7 5.2233 0.2825 -3.1016 16 6 5.5603 -0.8255 -3.7909 17 8 5.2567 -1.9231 -3.3639 18 6 6.2958 -0.7071 -5.0626 19 7 6.6359 0.4450 -5.5512 20 16 7.4142 0.2957 -6.8950 21 6 7.3700 -1.4635 -6.9944 22 6 7.8401 -2.3921 -7.9112 23 6 7.6364 -3.7262 -7.6875 24 6 6.9624 -4.1514 -6.5497 25 6 6.4920 -3.2559 -5.6357 26 6 6.6811 -1.8797 -5.8407 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.4217 3.6257 0.7816 35 1 5.1894 2.0598 -1.0871 36 1 3.6476 2.1423 -1.9726 37 1 3.5393 -0.3347 -2.0148 38 1 5.0812 -0.4172 -1.1292 39 1 5.4651 1.1579 -3.4423 40 1 8.3647 -2.0638 -8.7963 41 1 8.0013 -4.4523 -8.3989 42 1 6.8094 -5.2078 -6.3862 43 1 5.9706 -3.6045 -4.7565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731863824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:18 Heat of formation + Delta-G solvation = 31.562765 kcal Electronic energy + Delta-G solvation = -25495.563749 eV Core-core repulsion = 21860.543029 eV Total energy + Delta-G solvation = -3635.020720 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.62314 -38.92485 -36.99840 -36.45290 -34.29842 -32.87797 -31.34372 -30.95735 -30.68375 -28.50351 -25.92335 -25.55273 -23.60169 -23.18132 -22.30117 -20.89335 -20.38414 -19.95837 -18.82163 -17.58999 -16.62140 -16.54531 -15.60967 -15.45584 -15.28231 -15.02853 -14.83513 -14.43295 -14.22346 -14.09205 -13.81742 -13.46575 -12.96574 -12.80744 -12.69158 -12.42542 -12.37468 -11.96378 -11.57963 -11.52316 -11.33841 -11.19015 -10.94554 -10.89841 -10.74435 -10.43729 -10.37123 -10.08961 -10.03478 -9.88081 -9.83665 -9.59516 -9.31237 -8.64197 -8.48387 -8.06019 -6.63120 -5.83878 -3.43028 0.17557 0.85654 1.12575 1.49485 1.60385 3.15370 3.31690 3.37847 3.43557 3.46889 3.52742 4.14596 4.43512 4.49960 4.66865 4.92766 5.03566 5.19810 5.22842 5.27565 5.47679 5.65671 5.67013 5.75213 5.77016 5.89024 6.00769 6.09648 6.11504 6.18768 6.25298 6.28573 6.41671 6.51371 6.55444 6.62197 6.65962 6.80318 6.97636 6.98879 7.18121 7.53453 7.80209 7.83909 8.40127 8.47798 9.13661 9.75780 10.33575 11.16072 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.002963 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.318630 B = 9446.618650 C =10262.404650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.063 0.937 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.289 1.289 13 C 0.137 3.863 14 C 0.096 3.904 15 N -0.695 5.695 16 C 0.580 3.420 17 O -0.533 6.533 18 C 0.098 3.902 19 N -0.487 5.487 20 S 0.379 5.621 21 C -0.201 4.201 22 C -0.076 4.076 23 C -0.090 4.090 24 C -0.122 4.122 25 C -0.039 4.039 26 C -0.088 4.088 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.406 0.594 40 H 0.133 0.867 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -9.584 -18.669 21.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.080 0.920 7 C -0.187 4.187 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.214 1.214 12 H -0.216 1.216 13 C 0.009 3.991 14 C -0.029 4.029 15 N -0.346 5.346 16 C 0.360 3.640 17 O -0.409 6.409 18 C -0.091 4.091 19 N -0.312 5.312 20 S 0.538 5.462 21 C -0.322 4.322 22 C -0.098 4.098 23 C -0.113 4.113 24 C -0.142 4.142 25 C -0.061 4.061 26 C -0.098 4.098 27 H 0.062 0.938 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.241 0.759 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.062 -7.939 -18.764 20.603 hybrid contribution 0.439 -1.493 1.053 1.879 sum 3.500 -9.432 -17.711 20.369 Atomic orbital electron populations 1.21722 0.97342 1.00397 1.00999 1.22188 0.93809 1.00932 1.01578 1.20944 0.85026 0.92990 0.98949 1.43607 0.99444 1.84785 1.02025 1.19054 1.05648 1.20435 0.93949 0.91974 1.25193 1.00837 0.94544 0.98110 1.69998 1.25572 1.14785 1.42423 0.86348 0.81523 0.78469 0.81196 1.19927 1.21407 1.21576 1.21059 1.00483 0.91037 0.86479 1.22601 0.94908 1.03199 0.82207 1.46035 1.56048 1.08539 1.23933 1.17172 0.79504 0.85268 0.82075 1.90757 1.55210 1.26247 1.68732 1.22118 1.02284 0.86442 0.98269 1.71471 1.16731 1.29532 1.13480 1.81382 1.50652 0.97391 1.16773 1.24307 1.05514 1.02261 1.00078 1.19914 1.00160 0.91780 0.97961 1.21069 0.97532 0.95306 0.97422 1.20924 0.98708 1.00221 0.94310 1.20886 0.96288 0.89503 0.99457 1.19635 1.01497 0.94745 0.93969 0.93806 0.93206 0.93475 0.92936 0.92323 0.93541 0.94750 0.93539 0.88308 0.95189 0.92545 0.91300 0.75909 0.84906 0.84867 0.84897 0.83334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.91 37.16 0.37 -1.81 16 2 C -0.15 -2.66 6.23 -26.73 -0.17 -2.83 16 3 C 0.15 3.07 5.72 -4.04 -0.02 3.04 16 4 N -0.58 -14.04 2.43 -173.24 -0.42 -14.46 16 5 C -0.26 -6.99 9.45 -15.06 -0.14 -7.14 16 6 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 7 C 0.01 0.37 4.95 -17.43 -0.09 0.28 16 8 N -0.89 -24.91 11.47 55.49 0.64 -24.27 16 9 Si 0.90 21.50 29.60 -169.99 -5.03 16.47 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.14 3.10 5.45 -4.04 -0.02 3.07 16 14 C 0.10 1.97 6.00 -4.04 -0.02 1.95 16 15 N -0.70 -12.73 5.55 -61.39 -0.34 -13.07 16 16 C 0.58 10.55 7.81 -12.54 -0.10 10.46 16 17 O -0.53 -10.70 15.01 5.26 0.08 -10.62 16 18 C 0.10 1.54 6.82 -81.98 -0.56 0.98 16 19 N -0.49 -7.12 10.49 28.25 0.30 -6.83 16 20 S 0.38 4.23 23.36 -107.50 -2.51 1.72 16 21 C -0.20 -2.30 6.73 -38.49 -0.26 -2.56 16 22 C -0.08 -0.66 10.03 -39.93 -0.40 -1.06 16 23 C -0.09 -0.70 10.00 -39.85 -0.40 -1.10 16 24 C -0.12 -1.11 9.93 -40.02 -0.40 -1.51 16 25 C -0.04 -0.49 9.57 -39.45 -0.38 -0.86 16 26 C -0.09 -1.22 6.10 -105.09 -0.64 -1.86 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.98 6.64 -51.93 -0.34 0.64 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.03 0.68 7.83 -51.93 -0.41 0.27 16 34 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 35 H 0.10 2.52 5.52 -51.93 -0.29 2.24 16 36 H 0.03 0.64 7.86 -51.93 -0.41 0.23 16 37 H 0.06 1.16 6.64 -51.93 -0.34 0.82 16 38 H 0.07 1.59 8.14 -51.92 -0.42 1.16 16 39 H 0.41 6.95 7.91 -40.82 -0.32 6.62 16 40 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 41 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 43 H 0.15 1.98 6.64 -52.49 -0.35 1.63 16 LS Contribution 372.18 15.07 5.61 5.61 Total: -1.00 -30.50 372.18 -10.73 -41.23 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.81 Total: 5.17 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -3.23 Total: -0.94 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: 0.17 Total: -58.63 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -2.51 Total: 1.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.50 -10.73 -41.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731863824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.788 kcal (2) G-P(sol) polarization free energy of solvation -30.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds