Wall clock time and date at job start Tue Mar 31 2020 17:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46953 * 2 1 4 4 N 1.46497 * 109.47161 * 180.02562 * 3 2 1 5 5 C 1.36944 * 119.99915 * 275.31370 * 4 3 2 6 6 H 1.07992 * 120.00015 * 37.57158 * 5 4 3 7 7 C 1.38813 * 119.99691 * 217.57880 * 5 4 3 8 8 N 1.31612 * 120.00399 * 21.42559 * 7 5 4 9 9 Si 1.86796 * 119.99703 * 201.43153 * 7 5 4 10 10 H 1.48504 * 109.47197 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47448 * 119.99734 * 9 7 5 12 12 H 1.48505 * 109.47137 * 239.99793 * 9 7 5 13 13 C 1.46499 * 120.00451 * 95.30894 * 4 3 2 14 14 C 1.52999 * 109.47439 * 270.00507 * 13 4 3 15 15 N 1.46497 * 109.47352 * 179.97438 * 14 13 4 16 16 C 1.34773 * 120.00264 * 179.97438 * 15 14 13 17 17 O 1.21620 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.47381 * 120.00324 * 179.97438 * 16 15 14 19 19 N 1.29686 * 121.82827 * 359.97438 * 18 16 15 20 20 S 1.56009 * 111.74006 * 179.46947 * 19 18 16 21 21 C 1.76252 * 97.56002 * 0.53922 * 20 19 18 22 22 C 1.38700 * 134.18378 * 179.36575 * 21 20 19 23 23 C 1.36797 * 119.62819 * 179.97438 * 22 21 20 24 24 C 1.38913 * 120.30989 * 0.02562 * 23 22 21 25 25 C 1.36332 * 121.03217 * 359.97438 * 24 23 22 26 26 C 1.40417 * 119.95977 * 0.28446 * 25 24 23 27 27 H 1.09000 * 109.46767 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46983 * 299.99426 * 1 2 3 29 29 H 1.09000 * 109.47310 * 59.99860 * 1 2 3 30 30 H 1.09003 * 109.46983 * 240.00574 * 2 1 3 31 31 H 1.09000 * 109.47310 * 120.00140 * 2 1 3 32 32 H 1.08996 * 109.47156 * 60.00345 * 3 2 1 33 33 H 1.09000 * 109.47227 * 300.00191 * 3 2 1 34 34 H 0.96998 * 120.00374 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.47506 * 149.99796 * 13 4 3 36 36 H 1.09003 * 109.46488 * 30.00278 * 13 4 3 37 37 H 1.09004 * 109.47066 * 59.99419 * 14 13 4 38 38 H 1.09008 * 109.46917 * 299.99838 * 14 13 4 39 39 H 0.96998 * 119.99929 * 359.97438 * 15 14 13 40 40 H 1.07999 * 120.18804 * 0.02825 * 22 21 20 41 41 H 1.08001 * 119.84847 * 180.02562 * 23 22 21 42 42 H 1.07991 * 119.48398 * 180.02562 * 24 23 22 43 43 H 1.07996 * 120.02210 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1902 1.3326 1.1800 6 1 3.8185 0.6870 1.9619 7 6 5.3623 2.0511 1.3716 8 7 5.6024 3.1239 0.6480 9 14 6.5990 1.4951 2.6565 10 1 6.0964 0.2709 3.3302 11 1 7.8976 1.2012 1.9991 12 1 6.7858 2.5717 3.6622 13 6 4.2370 1.5602 -1.2641 14 6 4.4918 0.1649 -1.8378 15 7 5.2233 0.2825 -3.1016 16 6 5.5603 -0.8255 -3.7909 17 8 5.2567 -1.9231 -3.3639 18 6 6.2958 -0.7071 -5.0626 19 7 6.6359 0.4450 -5.5512 20 16 7.4142 0.2957 -6.8950 21 6 7.3700 -1.4635 -6.9944 22 6 7.8401 -2.3921 -7.9112 23 6 7.6364 -3.7262 -7.6875 24 6 6.9624 -4.1514 -6.5497 25 6 6.4920 -3.2559 -5.6357 26 6 6.6811 -1.8797 -5.8407 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.4217 3.6257 0.7816 35 1 5.1894 2.0598 -1.0871 36 1 3.6476 2.1423 -1.9726 37 1 3.5393 -0.3347 -2.0148 38 1 5.0812 -0.4172 -1.1292 39 1 5.4651 1.1579 -3.4423 40 1 8.3647 -2.0638 -8.7963 41 1 8.0013 -4.4523 -8.3989 42 1 6.8094 -5.2078 -6.3862 43 1 5.9706 -3.6045 -4.7565 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731863824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:17 Heat of formation + Delta-G solvation = 13.708431 kcal Electronic energy + Delta-G solvation = -25496.337971 eV Core-core repulsion = 21860.543029 eV Total energy + Delta-G solvation = -3635.794942 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69455 -40.14004 -38.30748 -37.93060 -35.85438 -34.62563 -32.67518 -32.11011 -31.65254 -30.15050 -27.37119 -27.18592 -25.06086 -24.06139 -23.36088 -22.55280 -21.93222 -21.44059 -19.76988 -18.95537 -18.33308 -17.54251 -17.10704 -16.78000 -16.70500 -16.19057 -16.05094 -15.83222 -15.72081 -15.35778 -15.08938 -14.82036 -14.56606 -14.32027 -14.27885 -13.38808 -13.34744 -13.13409 -13.11005 -12.96567 -12.72619 -12.67591 -12.52262 -12.41895 -12.24324 -12.06182 -11.89282 -11.74450 -11.72829 -11.35921 -11.09828 -10.89265 -10.56944 -10.18702 -10.11104 -8.93850 -8.62938 -7.88534 -5.51983 -0.81030 0.03447 0.26054 0.54884 0.60112 1.40286 1.45072 1.54373 1.92417 1.98868 2.47369 2.64221 3.17176 3.20653 3.50312 3.74106 3.85909 4.06257 4.19091 4.28655 4.31727 4.33426 4.39467 4.48460 4.50868 4.66224 4.67424 4.79212 4.82952 4.96038 4.97332 5.09803 5.14588 5.20122 5.24336 5.27044 5.35071 5.42545 5.46883 5.60918 5.62021 5.69576 5.83688 6.36127 6.43927 6.96153 7.11661 7.78809 8.31677 9.07408 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.012757 B = 0.002963 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.318630 B = 9446.618650 C =10262.404650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.268 4.268 6 H 0.055 0.945 7 C -0.030 4.030 8 N -0.911 5.911 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.292 1.292 12 H -0.286 1.286 13 C 0.146 3.854 14 C 0.120 3.880 15 N -0.696 5.696 16 C 0.578 3.422 17 O -0.560 6.560 18 C 0.067 3.933 19 N -0.513 5.513 20 S 0.441 5.559 21 C -0.213 4.213 22 C -0.071 4.071 23 C -0.078 4.078 24 C -0.109 4.109 25 C -0.072 4.072 26 C -0.114 4.114 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.047 0.953 34 H 0.253 0.747 35 H 0.072 0.928 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.038 0.962 39 H 0.411 0.589 40 H 0.170 0.830 41 H 0.178 0.822 42 H 0.160 0.840 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -11.006 -21.474 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.316 5.316 5 C -0.399 4.399 6 H 0.073 0.927 7 C -0.228 4.228 8 N -0.555 5.555 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.212 1.212 13 C 0.018 3.982 14 C -0.006 4.006 15 N -0.347 5.347 16 C 0.360 3.640 17 O -0.439 6.439 18 C -0.120 4.120 19 N -0.341 5.341 20 S 0.601 5.399 21 C -0.334 4.334 22 C -0.092 4.092 23 C -0.101 4.101 24 C -0.129 4.129 25 C -0.095 4.095 26 C -0.124 4.124 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.247 0.753 40 H 0.188 0.812 41 H 0.195 0.805 42 H 0.178 0.822 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 3.756 -9.366 -21.585 23.827 hybrid contribution 0.261 -1.098 1.745 2.078 sum 4.017 -10.464 -19.840 22.787 Atomic orbital electron populations 1.21654 0.94211 1.01837 1.01970 1.22012 0.96454 0.98612 1.00353 1.21067 0.83202 0.94700 0.99074 1.43833 1.00909 1.85066 1.01810 1.19200 1.06178 1.19848 0.94627 0.92747 1.25798 1.02226 0.94724 1.00080 1.70096 1.25833 1.15660 1.43890 0.85475 0.79234 0.78146 0.79222 1.19428 1.21849 1.21230 1.20882 0.99198 0.91767 0.86330 1.22076 0.94541 1.01349 0.82650 1.45892 1.56332 1.09197 1.23262 1.17577 0.79002 0.84496 0.82884 1.90723 1.56273 1.27057 1.69800 1.21770 1.04443 0.87762 0.97988 1.71163 1.17328 1.30019 1.15558 1.80990 1.48015 0.97079 1.13824 1.24571 1.05975 1.02714 1.00126 1.20475 0.99009 0.91651 0.98112 1.21590 0.95640 0.95850 0.97056 1.21311 0.96901 1.00994 0.93646 1.20881 0.98484 0.89779 1.00330 1.19718 1.02952 0.94782 0.94954 0.92155 0.92540 0.92206 0.93617 0.94089 0.94451 0.93440 0.93778 0.91035 0.94031 0.92511 0.94312 0.75251 0.81220 0.80495 0.82235 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 9.91 71.98 0.71 -3.20 16 2 C -0.13 -4.94 6.23 30.60 0.19 -4.74 16 3 C 0.14 6.10 5.72 86.38 0.49 6.59 16 4 N -0.60 -29.72 2.43 -702.02 -1.71 -31.43 16 5 C -0.27 -14.78 9.45 84.03 0.79 -13.98 16 6 H 0.05 3.03 7.92 -2.91 -0.02 3.01 16 7 C -0.03 -1.69 4.95 84.86 0.42 -1.27 16 8 N -0.91 -52.64 11.47 21.65 0.25 -52.39 16 9 Si 0.95 45.26 29.60 68.60 2.03 47.29 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 C 0.15 6.83 5.45 86.38 0.47 7.30 16 14 C 0.12 5.19 6.00 86.38 0.52 5.71 16 15 N -0.70 -26.93 5.55 -466.40 -2.59 -29.52 16 16 C 0.58 22.33 7.81 86.65 0.68 23.00 16 17 O -0.56 -24.00 15.01 -4.09 -0.06 -24.07 16 18 C 0.07 2.20 6.82 43.86 0.30 2.50 16 19 N -0.51 -15.16 10.49 -64.54 -0.68 -15.84 16 20 S 0.44 9.17 23.36 -56.49 -1.32 7.85 16 21 C -0.21 -4.47 6.73 22.97 0.15 -4.31 16 22 C -0.07 -0.93 10.03 22.04 0.22 -0.71 16 23 C -0.08 -0.85 10.00 22.09 0.22 -0.63 16 24 C -0.11 -1.72 9.93 21.99 0.22 -1.50 16 25 C -0.07 -1.81 9.57 22.36 0.21 -1.59 16 26 C -0.11 -3.19 6.10 -20.17 -0.12 -3.31 16 27 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.05 1.72 6.64 -2.39 -0.02 1.71 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 33 H 0.05 1.85 7.83 -2.39 -0.02 1.84 16 34 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 35 H 0.07 3.81 5.52 -2.39 -0.01 3.80 16 36 H 0.04 1.82 7.86 -2.39 -0.02 1.80 16 37 H 0.06 2.44 6.64 -2.39 -0.02 2.42 16 38 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.41 14.85 7.91 -92.71 -0.73 14.11 16 40 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 41 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 42 H 0.16 1.57 8.06 -2.92 -0.02 1.55 16 43 H 0.13 3.62 6.64 -2.91 -0.02 3.60 16 Total: -1.00 -69.55 372.18 1.71 -67.83 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: 0.30 Total: 20.42 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 5.48 Total: 9.85 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -4.73 Total: -129.18 kcal Atomic # 8 Polarization: -24.00 SS G_CDS: -0.06 Total: -24.07 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 9.17 SS G_CDS: -1.32 Total: 7.85 kcal Total: -69.55 1.71 -67.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731863824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.542 kcal (2) G-P(sol) polarization free energy of solvation -69.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.834 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds