Wall clock time and date at job start Tue Mar 31 2020 17:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 N 1.46500 * 109.47253 * 180.02562 * 3 2 1 5 5 C 1.36943 * 120.00017 * 275.31839 * 4 3 2 6 6 H 1.08000 * 120.00350 * 37.56928 * 5 4 3 7 7 C 1.38811 * 119.99700 * 217.57294 * 5 4 3 8 8 N 1.31621 * 120.00164 * 21.42752 * 7 5 4 9 9 Si 1.86800 * 119.99811 * 201.42933 * 7 5 4 10 10 H 1.48495 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47135 * 120.00096 * 9 7 5 12 12 H 1.48505 * 109.47140 * 239.99994 * 9 7 5 13 13 C 1.46497 * 120.00108 * 95.30806 * 4 3 2 14 14 C 1.52999 * 109.47567 * 270.00455 * 13 4 3 15 15 N 1.46496 * 109.47481 * 179.97438 * 14 13 4 16 16 C 1.34769 * 120.00250 * 180.02562 * 15 14 13 17 17 O 1.21607 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.47369 * 120.00261 * 180.02562 * 16 15 14 19 19 C 1.38773 * 120.55222 * 359.97438 * 18 16 15 20 20 N 1.31901 * 121.12085 * 179.72217 * 19 18 16 21 21 C 1.31670 * 122.21962 * 0.28170 * 20 19 18 22 22 C 1.39290 * 121.13913 * 359.97438 * 21 20 19 23 23 S 1.75888 * 131.39593 * 179.97438 * 22 21 20 24 24 C 1.75546 * 91.52127 * 180.02562 * 23 22 21 25 25 C 1.32477 * 110.79805 * 0.02562 * 24 23 22 26 26 C 1.40001 * 115.77835 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47342 * 59.99346 * 1 2 3 28 28 H 1.08997 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46818 * 299.99349 * 1 2 3 30 30 H 1.09000 * 109.46988 * 240.00873 * 2 1 3 31 31 H 1.09000 * 109.47342 * 120.00654 * 2 1 3 32 32 H 1.09004 * 109.47277 * 60.00546 * 3 2 1 33 33 H 1.09000 * 109.47633 * 300.00476 * 3 2 1 34 34 H 0.96998 * 120.00153 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47066 * 150.00486 * 13 4 3 36 36 H 1.08998 * 109.46949 * 30.00501 * 13 4 3 37 37 H 1.09002 * 109.46902 * 59.99930 * 14 13 4 38 38 H 1.08998 * 109.47024 * 300.00001 * 14 13 4 39 39 H 0.97008 * 119.99604 * 0.02562 * 15 14 13 40 40 H 1.07995 * 119.43689 * 0.02562 * 19 18 16 41 41 H 1.07997 * 119.43136 * 179.97438 * 21 20 19 42 42 H 1.08002 * 124.59924 * 180.02562 * 24 23 22 43 43 H 1.08001 * 122.11079 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.3325 1.1799 6 1 3.8186 0.6869 1.9619 7 6 5.3624 2.0509 1.3716 8 7 5.6025 3.1238 0.6479 9 14 6.5991 1.4949 2.6564 10 1 6.0970 0.2700 3.3293 11 1 7.8978 1.2009 1.9989 12 1 6.7859 2.5715 3.6621 13 6 4.2369 1.5602 -1.2642 14 6 4.4917 0.1649 -1.8378 15 7 5.2232 0.2825 -3.1017 16 6 5.5593 -0.8254 -3.7914 17 8 5.2558 -1.9229 -3.3645 18 6 6.2955 -0.7071 -5.0625 19 6 6.6481 0.5395 -5.5601 20 7 7.3118 0.6581 -6.6938 21 6 7.6682 -0.3868 -7.4113 22 6 7.3578 -1.6815 -7.0019 23 16 7.6929 -3.2449 -7.7347 24 6 6.8851 -4.0856 -6.4224 25 6 6.4170 -3.2254 -5.5302 26 6 6.6527 -1.8733 -5.8062 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 6.4215 3.6260 0.7821 35 1 5.1894 2.0597 -1.0871 36 1 3.6476 2.1422 -1.9726 37 1 3.5392 -0.3346 -2.0149 38 1 5.0811 -0.4172 -1.1294 39 1 5.4656 1.1580 -3.4421 40 1 6.3787 1.4272 -5.0073 41 1 8.2104 -0.2374 -8.3333 42 1 6.7836 -5.1585 -6.3519 43 1 5.8863 -3.5469 -4.6463 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731869343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:49 Heat of formation + Delta-G solvation = 36.122945 kcal Electronic energy + Delta-G solvation = -25618.997762 eV Core-core repulsion = 21984.174786 eV Total energy + Delta-G solvation = -3634.822976 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93623 -38.88911 -36.67940 -36.40323 -34.33723 -32.93734 -31.99841 -30.73041 -30.55123 -28.15457 -25.59500 -24.89418 -24.68357 -23.23379 -21.30436 -21.12407 -20.64688 -20.14524 -18.53699 -17.54740 -16.67819 -16.53793 -16.09953 -15.37357 -15.29024 -14.93895 -14.56176 -14.44190 -14.29508 -14.23559 -13.87026 -13.53720 -13.00477 -12.96129 -12.80804 -12.64471 -12.46619 -12.24107 -11.60414 -11.55000 -11.23812 -11.19836 -10.97300 -10.76950 -10.49525 -10.40225 -10.31899 -10.11902 -10.08925 -9.91619 -9.74620 -9.49361 -9.32236 -8.68079 -8.51544 -8.12892 -6.66152 -5.87300 -3.46134 0.03506 0.51562 1.12446 1.56360 2.10783 2.85253 3.29996 3.36828 3.41624 3.45057 3.69210 4.05824 4.26499 4.42752 4.47243 4.61166 4.84748 5.03973 5.12277 5.23464 5.33546 5.44694 5.64316 5.65656 5.73607 5.88902 5.97757 6.05887 6.08402 6.12820 6.21293 6.25797 6.38566 6.49705 6.59406 6.62994 6.75488 6.94475 6.95790 7.15297 7.48029 7.53486 7.76068 7.77721 8.38472 8.44751 9.10709 9.72546 10.30209 11.12787 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.002898 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.088647 B = 9660.133221 C =10488.705216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.147 3.853 4 N -0.579 5.579 5 C -0.261 4.261 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.886 5.886 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.289 1.289 13 C 0.136 3.864 14 C 0.097 3.903 15 N -0.710 5.710 16 C 0.556 3.444 17 O -0.538 6.538 18 C -0.141 4.141 19 C 0.124 3.876 20 N -0.473 5.473 21 C 0.175 3.825 22 C -0.216 4.216 23 S 0.112 5.888 24 C -0.174 4.174 25 C -0.120 4.120 26 C 0.015 3.985 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.046 0.954 33 H 0.034 0.966 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.397 0.603 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.175 0.825 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.871 -8.874 -17.098 19.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.185 4.185 3 C 0.021 3.979 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.080 0.920 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.724 3.276 10 H -0.200 1.200 11 H -0.214 1.214 12 H -0.215 1.215 13 C 0.009 3.991 14 C -0.028 4.028 15 N -0.360 5.360 16 C 0.341 3.659 17 O -0.417 6.417 18 C -0.149 4.149 19 C -0.029 4.029 20 N -0.182 5.182 21 C 0.008 3.992 22 C -0.334 4.334 23 S 0.374 5.626 24 C -0.309 4.309 25 C -0.149 4.149 26 C -0.002 4.002 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.117 0.883 36 H 0.048 0.952 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.184 0.816 41 H 0.182 0.818 42 H 0.192 0.808 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.666 -9.149 -18.251 20.589 hybrid contribution -0.061 -0.333 2.043 2.070 sum 2.605 -9.482 -16.209 18.958 Atomic orbital electron populations 1.21723 0.97332 1.00405 1.01013 1.22184 0.93819 1.00929 1.01561 1.20946 0.85014 0.92977 0.98967 1.43602 0.99446 1.84783 1.02033 1.19057 1.05613 1.20439 0.93963 0.92003 1.25180 1.00806 0.94533 0.98097 1.69996 1.25627 1.14759 1.42454 0.86354 0.81506 0.78481 0.81229 1.19961 1.21387 1.21548 1.21072 1.00461 0.91065 0.86530 1.22559 0.94893 1.03102 0.82246 1.46087 1.57327 1.08102 1.24519 1.17830 0.79606 0.85081 0.83396 1.90712 1.55165 1.26200 1.69591 1.21007 1.03219 0.93383 0.97247 1.22831 0.92308 0.96042 0.91754 1.67748 1.11668 1.32279 1.06481 1.22374 0.93921 0.84961 0.97989 1.23861 1.08301 1.00056 1.01153 1.84111 1.59522 0.93864 1.25123 1.25580 1.03478 1.04106 0.97784 1.20334 1.02022 0.90428 1.02119 1.18278 0.95472 0.93843 0.92558 0.93470 0.93816 0.93187 0.92958 0.92345 0.93540 0.94725 0.93523 0.88308 0.95184 0.92661 0.91428 0.76845 0.81602 0.81789 0.80784 0.81359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.14 -2.60 6.23 -26.73 -0.17 -2.77 16 3 C 0.15 2.99 5.72 -4.04 -0.02 2.97 16 4 N -0.58 -13.64 2.43 -173.24 -0.42 -14.06 16 5 C -0.26 -6.85 9.45 -15.06 -0.14 -7.00 16 6 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 7 C 0.01 0.38 4.95 -17.43 -0.09 0.29 16 8 N -0.89 -24.25 11.47 55.49 0.64 -23.61 16 9 Si 0.90 21.13 29.60 -169.99 -5.03 16.09 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 13 C 0.14 2.92 5.45 -4.04 -0.02 2.90 16 14 C 0.10 1.89 6.00 -4.04 -0.02 1.87 16 15 N -0.71 -11.54 5.51 -61.41 -0.34 -11.87 16 16 C 0.56 9.30 7.77 -12.55 -0.10 9.20 16 17 O -0.54 -10.49 14.47 5.27 0.08 -10.42 16 18 C -0.14 -2.01 5.94 -104.20 -0.62 -2.63 16 19 C 0.12 1.54 10.67 -17.32 -0.18 1.36 16 20 N -0.47 -5.78 10.32 -12.87 -0.13 -5.91 16 21 C 0.18 1.85 11.20 -17.23 -0.19 1.65 16 22 C -0.22 -2.45 6.52 -38.48 -0.25 -2.70 16 23 S 0.11 0.98 23.29 -107.50 -2.50 -1.52 16 24 C -0.17 -1.66 11.10 28.82 0.32 -1.34 16 25 C -0.12 -1.51 9.43 -40.84 -0.39 -1.90 16 26 C 0.02 0.21 5.88 -106.74 -0.63 -0.42 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.05 0.96 6.64 -51.93 -0.34 0.61 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 33 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 34 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 35 H 0.10 2.39 5.52 -51.93 -0.29 2.10 16 36 H 0.03 0.60 7.86 -51.93 -0.41 0.19 16 37 H 0.06 1.10 6.64 -51.93 -0.34 0.75 16 38 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 39 H 0.40 5.40 6.51 -40.82 -0.27 5.13 16 40 H 0.17 1.71 6.37 -52.49 -0.33 1.37 16 41 H 0.16 1.17 8.06 -52.49 -0.42 0.74 16 42 H 0.17 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.17 2.36 6.28 -52.49 -0.33 2.03 16 LS Contribution 369.43 15.07 5.57 5.57 Total: -1.00 -30.48 369.43 -9.93 -40.41 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.65 Total: 5.61 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.13 Total: -0.28 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.26 Total: -55.46 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.08 Total: -10.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.09 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.50 Total: -1.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.48 -9.93 -40.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731869343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.534 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds