Wall clock time and date at job start Tue Mar 31 2020 17:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46949 * 2 1 4 4 N 1.46500 * 109.47253 * 180.02562 * 3 2 1 5 5 C 1.36943 * 120.00017 * 275.31839 * 4 3 2 6 6 H 1.08000 * 120.00350 * 37.56928 * 5 4 3 7 7 C 1.38811 * 119.99700 * 217.57294 * 5 4 3 8 8 N 1.31621 * 120.00164 * 21.42752 * 7 5 4 9 9 Si 1.86800 * 119.99811 * 201.42933 * 7 5 4 10 10 H 1.48495 * 109.47170 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47135 * 120.00096 * 9 7 5 12 12 H 1.48505 * 109.47140 * 239.99994 * 9 7 5 13 13 C 1.46497 * 120.00108 * 95.30806 * 4 3 2 14 14 C 1.52999 * 109.47567 * 270.00455 * 13 4 3 15 15 N 1.46496 * 109.47481 * 179.97438 * 14 13 4 16 16 C 1.34769 * 120.00250 * 180.02562 * 15 14 13 17 17 O 1.21607 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.47369 * 120.00261 * 180.02562 * 16 15 14 19 19 C 1.38773 * 120.55222 * 359.97438 * 18 16 15 20 20 N 1.31901 * 121.12085 * 179.72217 * 19 18 16 21 21 C 1.31670 * 122.21962 * 0.28170 * 20 19 18 22 22 C 1.39290 * 121.13913 * 359.97438 * 21 20 19 23 23 S 1.75888 * 131.39593 * 179.97438 * 22 21 20 24 24 C 1.75546 * 91.52127 * 180.02562 * 23 22 21 25 25 C 1.32477 * 110.79805 * 0.02562 * 24 23 22 26 26 C 1.40001 * 115.77835 * 0.02562 * 25 24 23 27 27 H 1.09000 * 109.47342 * 59.99346 * 1 2 3 28 28 H 1.08997 * 109.47436 * 179.97438 * 1 2 3 29 29 H 1.09009 * 109.46818 * 299.99349 * 1 2 3 30 30 H 1.09000 * 109.46988 * 240.00873 * 2 1 3 31 31 H 1.09000 * 109.47342 * 120.00654 * 2 1 3 32 32 H 1.09004 * 109.47277 * 60.00546 * 3 2 1 33 33 H 1.09000 * 109.47633 * 300.00476 * 3 2 1 34 34 H 0.96998 * 120.00153 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47066 * 150.00486 * 13 4 3 36 36 H 1.08998 * 109.46949 * 30.00501 * 13 4 3 37 37 H 1.09002 * 109.46902 * 59.99930 * 14 13 4 38 38 H 1.08998 * 109.47024 * 300.00001 * 14 13 4 39 39 H 0.97008 * 119.99604 * 0.02562 * 15 14 13 40 40 H 1.07995 * 119.43689 * 0.02562 * 19 18 16 41 41 H 1.07997 * 119.43136 * 179.97438 * 21 20 19 42 42 H 1.08002 * 124.59924 * 180.02562 * 24 23 22 43 43 H 1.08001 * 122.11079 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1902 1.3325 1.1799 6 1 3.8186 0.6869 1.9619 7 6 5.3624 2.0509 1.3716 8 7 5.6025 3.1238 0.6479 9 14 6.5991 1.4949 2.6564 10 1 6.0970 0.2700 3.3293 11 1 7.8978 1.2009 1.9989 12 1 6.7859 2.5715 3.6621 13 6 4.2369 1.5602 -1.2642 14 6 4.4917 0.1649 -1.8378 15 7 5.2232 0.2825 -3.1017 16 6 5.5593 -0.8254 -3.7914 17 8 5.2558 -1.9229 -3.3645 18 6 6.2955 -0.7071 -5.0625 19 6 6.6481 0.5395 -5.5601 20 7 7.3118 0.6581 -6.6938 21 6 7.6682 -0.3868 -7.4113 22 6 7.3578 -1.6815 -7.0019 23 16 7.6929 -3.2449 -7.7347 24 6 6.8851 -4.0856 -6.4224 25 6 6.4170 -3.2254 -5.5302 26 6 6.6527 -1.8733 -5.8062 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.6766 1.9564 -0.8899 34 1 6.4215 3.6260 0.7821 35 1 5.1894 2.0597 -1.0871 36 1 3.6476 2.1422 -1.9726 37 1 3.5392 -0.3346 -2.0149 38 1 5.0811 -0.4172 -1.1294 39 1 5.4656 1.1580 -3.4421 40 1 6.3787 1.4272 -5.0073 41 1 8.2104 -0.2374 -8.3333 42 1 6.7836 -5.1585 -6.3519 43 1 5.8863 -3.5469 -4.6463 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731869343.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:48 Heat of formation + Delta-G solvation = 18.085867 kcal Electronic energy + Delta-G solvation = -25619.779908 eV Core-core repulsion = 21984.174786 eV Total energy + Delta-G solvation = -3635.605122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.92924 -40.16318 -38.25538 -37.44172 -35.78793 -34.61766 -33.20038 -32.37266 -31.41564 -29.71004 -27.34635 -26.05657 -25.62966 -24.67917 -22.71166 -22.28443 -21.92183 -21.70047 -19.64193 -18.73131 -18.32417 -17.48138 -17.16575 -16.95856 -16.66840 -16.50677 -15.94485 -15.71242 -15.41168 -15.28652 -15.12538 -14.95621 -14.62697 -14.31551 -14.26447 -13.77862 -13.34766 -13.33992 -13.14762 -13.07761 -12.92468 -12.65848 -12.51044 -12.23624 -12.05045 -12.00469 -11.87893 -11.68977 -11.46539 -11.28396 -11.05140 -10.67501 -10.54662 -10.21029 -10.07784 -8.92661 -8.60011 -7.86778 -5.49575 -0.89345 -0.37875 0.35121 0.74857 1.20940 1.41352 1.46725 1.55391 1.68923 2.03967 2.49008 2.66144 3.17866 3.21057 3.40449 3.56904 3.65409 3.78339 3.93959 4.11221 4.21726 4.27118 4.34330 4.37614 4.48745 4.53685 4.67603 4.71746 4.78016 4.85151 4.99078 5.01911 5.13295 5.17497 5.22419 5.25866 5.29911 5.34416 5.43509 5.62242 5.65005 5.72935 6.41333 6.47778 6.64785 7.07918 7.15232 7.81630 8.33789 9.08993 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.013026 B = 0.002898 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.088647 B = 9660.133221 C =10488.705216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.134 4.134 3 C 0.145 3.855 4 N -0.596 5.596 5 C -0.269 4.269 6 H 0.051 0.949 7 C -0.027 4.027 8 N -0.909 5.909 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.290 1.290 12 H -0.286 1.286 13 C 0.144 3.856 14 C 0.121 3.879 15 N -0.705 5.705 16 C 0.557 3.443 17 O -0.573 6.573 18 C -0.171 4.171 19 C 0.132 3.868 20 N -0.491 5.491 21 C 0.189 3.811 22 C -0.237 4.237 23 S 0.187 5.813 24 C -0.155 4.155 25 C -0.160 4.160 26 C -0.002 4.002 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.038 0.962 32 H 0.036 0.964 33 H 0.050 0.950 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.052 0.948 38 H 0.033 0.967 39 H 0.410 0.590 40 H 0.180 0.820 41 H 0.203 0.797 42 H 0.205 0.795 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.394 -9.729 -19.632 22.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.399 4.399 6 H 0.069 0.931 7 C -0.225 4.225 8 N -0.552 5.552 9 Si 0.776 3.224 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.017 3.983 14 C -0.005 4.005 15 N -0.356 5.356 16 C 0.344 3.656 17 O -0.454 6.454 18 C -0.178 4.178 19 C -0.021 4.021 20 N -0.200 5.200 21 C 0.022 3.978 22 C -0.355 4.355 23 S 0.450 5.550 24 C -0.291 4.291 25 C -0.190 4.190 26 C -0.019 4.019 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.247 0.753 40 H 0.197 0.803 41 H 0.220 0.780 42 H 0.222 0.778 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.182 -9.990 -20.811 23.303 hybrid contribution -0.187 -0.180 2.665 2.678 sum 2.995 -10.170 -18.146 21.016 Atomic orbital electron populations 1.21656 0.94283 1.01763 1.02001 1.22012 0.96397 0.98774 1.00250 1.21057 0.83311 0.94530 0.99121 1.43831 1.00860 1.85049 1.01930 1.19168 1.06179 1.19869 0.94711 0.93096 1.25726 1.02062 0.94740 0.99943 1.70080 1.25891 1.15495 1.43747 0.85528 0.79429 0.78027 0.79380 1.19791 1.21694 1.21304 1.20934 0.99345 0.91781 0.86266 1.22002 0.94392 1.01234 0.82899 1.45882 1.57229 1.09044 1.23465 1.18242 0.78981 0.84303 0.84045 1.90688 1.56614 1.27422 1.70701 1.20763 1.05534 0.94790 0.96739 1.23017 0.91419 0.95783 0.91868 1.67847 1.12506 1.33041 1.06591 1.23041 0.92098 0.84296 0.98348 1.24162 1.08455 1.01967 1.00908 1.83881 1.57322 0.91033 1.22799 1.26038 1.00708 1.05458 0.96883 1.20211 1.04807 0.90960 1.02990 1.18497 0.95970 0.93952 0.93497 0.92100 0.92300 0.92580 0.93614 0.94311 0.94603 0.93192 0.93686 0.90746 0.93547 0.92969 0.94824 0.75272 0.80310 0.78013 0.77771 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.12 16 2 C -0.13 -4.83 6.23 30.59 0.19 -4.64 16 3 C 0.15 5.93 5.72 86.38 0.49 6.42 16 4 N -0.60 -28.74 2.43 -702.00 -1.71 -30.45 16 5 C -0.27 -14.50 9.45 84.03 0.79 -13.70 16 6 H 0.05 2.80 7.92 -2.91 -0.02 2.78 16 7 C -0.03 -1.44 4.95 84.86 0.42 -1.01 16 8 N -0.91 -50.67 11.47 21.65 0.25 -50.42 16 9 Si 0.95 44.32 29.60 68.60 2.03 46.35 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 12 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.14 6.32 5.45 86.38 0.47 6.80 16 14 C 0.12 4.91 6.00 86.38 0.52 5.43 16 15 N -0.70 -23.76 5.51 -466.45 -2.57 -26.33 16 16 C 0.56 19.50 7.77 86.65 0.67 20.18 16 17 O -0.57 -23.73 14.47 -4.05 -0.06 -23.79 16 18 C -0.17 -4.96 5.94 -19.59 -0.12 -5.08 16 19 C 0.13 3.23 10.67 84.81 0.90 4.14 16 20 N -0.49 -11.19 10.32 -194.65 -2.01 -13.20 16 21 C 0.19 3.49 11.20 84.97 0.95 4.44 16 22 C -0.24 -4.88 6.52 22.98 0.15 -4.73 16 23 S 0.19 2.62 23.29 -56.49 -1.32 1.31 16 24 C -0.15 -2.62 11.10 66.69 0.74 -1.88 16 25 C -0.16 -4.06 9.43 21.57 0.20 -3.86 16 26 C 0.00 -0.06 5.88 -21.24 -0.12 -0.18 16 27 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.05 1.69 6.64 -2.39 -0.02 1.67 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.04 1.52 8.08 -2.38 -0.02 1.50 16 33 H 0.05 1.87 7.83 -2.39 -0.02 1.85 16 34 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 35 H 0.07 3.71 5.52 -2.39 -0.01 3.69 16 36 H 0.05 1.86 7.86 -2.39 -0.02 1.84 16 37 H 0.05 2.15 6.64 -2.39 -0.02 2.13 16 38 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.41 11.43 6.51 -92.70 -0.60 10.82 16 40 H 0.18 3.63 6.37 -2.91 -0.02 3.61 16 41 H 0.20 2.01 8.06 -2.91 -0.02 1.99 16 42 H 0.21 2.03 8.06 -2.91 -0.02 2.01 16 43 H 0.14 4.32 6.28 -2.91 -0.02 4.30 16 Total: -1.00 -68.09 369.43 2.04 -66.05 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.44 Total: 21.28 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: 6.98 Total: 9.19 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -6.04 Total: -120.39 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.06 Total: -23.79 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.32 Total: 1.31 kcal Total: -68.09 2.04 -66.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731869343.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.138 kcal (2) G-P(sol) polarization free energy of solvation -68.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds