Wall clock time and date at job start Tue Mar 31 2020 17:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47562 * 2 1 4 4 N 1.46502 * 109.47467 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00084 * 269.99915 * 4 3 2 6 6 H 1.08005 * 119.99580 * 38.13263 * 5 4 3 7 7 C 1.38804 * 120.00206 * 218.13001 * 5 4 3 8 8 N 1.31623 * 119.99962 * 21.28076 * 7 5 4 9 9 Si 1.86799 * 120.00303 * 201.28094 * 7 5 4 10 10 H 1.48495 * 109.47004 * 89.99905 * 9 7 5 11 11 H 1.48493 * 109.47355 * 210.00135 * 9 7 5 12 12 H 1.48501 * 109.47030 * 330.00291 * 9 7 5 13 13 C 1.46504 * 119.99713 * 89.99748 * 4 3 2 14 14 C 1.52999 * 109.46780 * 264.50005 * 13 4 3 15 15 N 1.46506 * 109.46903 * 180.02562 * 14 13 4 16 16 C 1.34769 * 120.00000 * 180.02562 * 15 14 13 17 17 O 1.21585 * 120.00343 * 359.97438 * 16 15 14 18 18 C 1.47591 * 119.99874 * 179.97438 * 16 15 14 19 19 C 1.40196 * 120.12543 * 359.97438 * 18 16 15 20 20 C 1.35757 * 120.61469 * 180.02562 * 19 18 16 21 21 C 1.41244 * 120.63661 * 0.02562 * 20 19 18 22 22 N 1.34409 * 129.48187 * 180.02562 * 21 20 19 23 23 C 1.28068 * 117.91505 * 179.29069 * 22 21 20 24 24 S 1.70646 * 111.51164 * 0.64127 * 23 22 21 25 25 C 1.40150 * 118.74080 * 359.79227 * 21 20 19 26 26 C 1.38916 * 120.41269 * 0.43682 * 25 21 20 27 27 H 1.09004 * 109.46934 * 59.99641 * 1 2 3 28 28 H 1.08997 * 109.47400 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46883 * 300.00275 * 1 2 3 30 30 H 1.09005 * 109.46883 * 239.99725 * 2 1 3 31 31 H 1.08997 * 109.47269 * 120.00143 * 2 1 3 32 32 H 1.08995 * 109.47127 * 59.99892 * 3 2 1 33 33 H 1.09000 * 109.46591 * 299.99965 * 3 2 1 34 34 H 0.96997 * 120.00267 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.46739 * 144.50555 * 13 4 3 36 36 H 1.09000 * 109.47345 * 24.50153 * 13 4 3 37 37 H 1.08996 * 109.47426 * 60.01065 * 14 13 4 38 38 H 1.08997 * 109.47793 * 300.00024 * 14 13 4 39 39 H 0.97008 * 119.99545 * 359.97438 * 15 14 13 40 40 H 1.07998 * 119.69237 * 0.02562 * 19 18 16 41 41 H 1.08003 * 119.68138 * 180.02562 * 20 19 18 42 42 H 1.07998 * 124.24454 * 180.21998 * 23 22 21 43 43 H 1.07993 * 120.07869 * 179.80997 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.4423 1.1850 6 1 3.8235 0.8646 2.0206 7 6 5.3563 2.1844 1.3129 8 7 5.5894 3.1898 0.4960 9 14 6.5946 1.7565 2.6443 10 1 7.5730 0.7739 2.1129 11 1 7.3096 2.9866 3.0693 12 1 5.8857 1.1686 3.8092 13 6 4.2370 1.4426 -1.2697 14 6 4.6115 0.0067 -1.6425 15 7 5.3440 0.0069 -2.9113 16 6 5.7772 -1.1549 -3.4395 17 8 5.5605 -2.2031 -2.8628 18 6 6.5146 -1.1548 -4.7180 19 6 6.7654 0.0523 -5.3855 20 6 7.4422 0.0639 -6.5622 21 6 7.9065 -1.1397 -7.1374 22 7 8.5870 -1.3340 -8.2801 23 6 8.9126 -2.5339 -8.5874 24 16 8.3606 -3.6503 -7.4208 25 6 7.6590 -2.3459 -6.4681 26 6 6.9619 -2.3532 -5.2665 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 6.4040 3.7087 0.5855 35 1 5.1433 2.0392 -1.1663 36 1 3.6085 1.8688 -2.0516 37 1 3.7053 -0.5900 -1.7460 38 1 5.2400 -0.4196 -0.8607 39 1 5.5165 0.8432 -3.3716 40 1 6.4169 0.9815 -4.9596 41 1 7.6274 1.0025 -7.0634 42 1 9.4613 -2.8058 -9.4770 43 1 6.7716 -3.2861 -4.7569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731873339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:40 Heat of formation + Delta-G solvation = 35.971884 kcal Electronic energy + Delta-G solvation = -25258.728207 eV Core-core repulsion = 21623.898680 eV Total energy + Delta-G solvation = -3634.829527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.80855 -39.35079 -36.85966 -36.41467 -34.38543 -32.92052 -31.45677 -31.03254 -30.36082 -28.06889 -25.70313 -25.57915 -23.93492 -22.94640 -22.35006 -21.03297 -20.48356 -20.06381 -18.95823 -17.54698 -16.65183 -16.59026 -16.14581 -15.33346 -15.23178 -15.05842 -14.68545 -14.34463 -14.29033 -14.11347 -13.95116 -13.71740 -13.13487 -12.95988 -12.83524 -12.76086 -12.63260 -11.97686 -11.61753 -11.51848 -11.22013 -11.16657 -10.96165 -10.77727 -10.50907 -10.47395 -10.37103 -10.11562 -10.03671 -9.92787 -9.86833 -9.63873 -9.08027 -8.62854 -8.52745 -8.40155 -6.65272 -5.85134 -3.46773 -0.13330 0.85848 0.88833 1.35737 1.76194 2.94027 3.33051 3.40541 3.41832 3.44524 3.62561 3.67107 4.29518 4.43424 4.67793 4.69659 4.86509 4.92405 5.18827 5.24657 5.44460 5.50679 5.63863 5.73380 5.74678 5.84451 5.96459 5.99854 6.08691 6.17513 6.26355 6.28358 6.38941 6.50554 6.59324 6.63827 6.78408 6.94607 6.98110 7.14370 7.19455 7.50400 7.78118 7.81031 8.42487 8.46252 9.11334 9.72946 10.30840 11.13249 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.002608 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.190730 B =10732.589238 C =11678.658700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.148 3.852 4 N -0.579 5.579 5 C -0.262 4.262 6 H 0.062 0.938 7 C 0.015 3.985 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.276 1.276 13 C 0.134 3.866 14 C 0.098 3.902 15 N -0.710 5.710 16 C 0.551 3.449 17 O -0.540 6.540 18 C -0.107 4.107 19 C -0.076 4.076 20 C -0.068 4.068 21 C 0.094 3.906 22 N -0.467 5.467 23 C 0.066 3.934 24 S 0.109 5.891 25 C -0.191 4.191 26 C -0.010 4.010 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.049 0.951 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.255 0.745 35 H 0.098 0.902 36 H 0.030 0.970 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.397 0.603 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.205 0.795 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.214 -8.473 -17.562 19.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.022 3.978 4 N -0.299 5.299 5 C -0.391 4.391 6 H 0.079 0.921 7 C -0.186 4.186 8 N -0.528 5.528 9 Si 0.725 3.275 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.201 1.201 13 C 0.007 3.993 14 C -0.027 4.027 15 N -0.361 5.361 16 C 0.337 3.663 17 O -0.419 6.419 18 C -0.115 4.115 19 C -0.098 4.098 20 C -0.089 4.089 21 C -0.027 4.027 22 N -0.179 5.179 23 C -0.238 4.238 24 S 0.364 5.636 25 C -0.310 4.310 26 C -0.033 4.033 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.116 0.884 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.086 0.914 39 H 0.232 0.768 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.222 0.778 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.430 -9.703 -17.446 20.256 hybrid contribution 0.660 0.884 0.611 1.261 sum 4.090 -8.820 -16.836 19.441 Atomic orbital electron populations 1.21722 0.97307 1.00412 1.01031 1.22205 0.93870 1.00979 1.01517 1.20953 0.84982 0.92875 0.99039 1.43599 0.99440 1.85061 1.01787 1.19027 1.06071 1.22689 0.91330 0.92051 1.25188 1.00816 0.94603 0.97974 1.69968 1.25975 1.17049 1.39844 0.86395 0.81673 0.77547 0.81836 1.21196 1.21685 1.20136 1.21086 0.99647 0.91652 0.86923 1.22503 0.94983 1.02640 0.82577 1.46066 1.56598 1.08171 1.25218 1.18013 0.79500 0.84533 0.84291 1.90780 1.57607 1.31364 1.62172 1.20077 1.01449 0.93536 0.96404 1.20925 0.96796 0.97860 0.94204 1.20293 0.97477 0.95907 0.95186 1.19396 0.98806 0.93962 0.90527 1.66202 1.13485 1.22314 1.15919 1.28213 1.01464 0.90580 1.03553 1.84084 1.52902 1.10121 1.16534 1.23753 1.08370 0.96612 1.02273 1.20432 0.92693 0.98986 0.91185 0.93443 0.93811 0.93188 0.92997 0.92370 0.93231 0.94953 0.93498 0.88426 0.95122 0.92698 0.91383 0.76826 0.83927 0.84028 0.77810 0.83656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.91 37.16 0.37 -1.76 16 2 C -0.15 -2.60 6.26 -26.73 -0.17 -2.77 16 3 C 0.15 3.00 5.71 -4.04 -0.02 2.97 16 4 N -0.58 -13.64 2.43 -173.24 -0.42 -14.06 16 5 C -0.26 -6.87 9.42 -15.06 -0.14 -7.01 16 6 H 0.06 1.64 7.92 -52.48 -0.42 1.22 16 7 C 0.01 0.39 5.00 -17.43 -0.09 0.31 16 8 N -0.89 -24.20 11.43 55.49 0.63 -23.57 16 9 Si 0.90 21.19 29.60 -169.99 -5.03 16.16 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 13 C 0.13 2.88 5.50 -4.04 -0.02 2.85 16 14 C 0.10 1.94 5.97 -4.04 -0.02 1.91 16 15 N -0.71 -11.56 5.51 -61.33 -0.34 -11.89 16 16 C 0.55 9.22 7.76 -12.45 -0.10 9.12 16 17 O -0.54 -10.97 16.34 5.29 0.09 -10.89 16 18 C -0.11 -1.45 5.87 -105.00 -0.62 -2.07 16 19 C -0.08 -0.84 9.44 -39.74 -0.38 -1.21 16 20 C -0.07 -0.72 10.03 -39.33 -0.39 -1.12 16 21 C 0.09 1.13 7.00 -84.88 -0.59 0.53 16 22 N -0.47 -5.21 10.56 -12.83 -0.14 -5.34 16 23 C 0.07 0.53 12.11 51.19 0.62 1.15 16 24 S 0.11 0.94 23.17 -107.50 -2.49 -1.55 16 25 C -0.19 -2.25 6.54 -38.61 -0.25 -2.50 16 26 C -0.01 -0.13 9.62 -38.98 -0.37 -0.50 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.94 6.65 -51.93 -0.35 0.60 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 1.04 8.04 -51.93 -0.42 0.62 16 33 H 0.03 0.62 7.86 -51.93 -0.41 0.21 16 34 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.10 2.35 5.53 -51.93 -0.29 2.06 16 36 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 37 H 0.05 1.11 6.65 -51.93 -0.35 0.76 16 38 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 39 H 0.40 5.31 6.49 -40.82 -0.26 5.05 16 40 H 0.14 1.24 6.38 -52.49 -0.33 0.91 16 41 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 42 H 0.21 0.78 8.06 -52.49 -0.42 0.36 16 43 H 0.15 1.86 7.64 -52.49 -0.40 1.46 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -31.51 372.62 -9.98 -41.49 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -5.72 Total: 4.12 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.18 Total: -0.09 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.26 Total: -54.86 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 16 Polarization: 0.94 SS G_CDS: -2.49 Total: -1.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.51 -9.98 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731873339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.465 kcal (2) G-P(sol) polarization free energy of solvation -31.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds