Wall clock time and date at job start Tue Mar 31 2020 17:27:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47562 * 2 1 4 4 N 1.46502 * 109.47467 * 180.02562 * 3 2 1 5 5 C 1.36936 * 120.00084 * 269.99915 * 4 3 2 6 6 H 1.08005 * 119.99580 * 38.13263 * 5 4 3 7 7 C 1.38804 * 120.00206 * 218.13001 * 5 4 3 8 8 N 1.31623 * 119.99962 * 21.28076 * 7 5 4 9 9 Si 1.86799 * 120.00303 * 201.28094 * 7 5 4 10 10 H 1.48495 * 109.47004 * 89.99905 * 9 7 5 11 11 H 1.48493 * 109.47355 * 210.00135 * 9 7 5 12 12 H 1.48501 * 109.47030 * 330.00291 * 9 7 5 13 13 C 1.46504 * 119.99713 * 89.99748 * 4 3 2 14 14 C 1.52999 * 109.46780 * 264.50005 * 13 4 3 15 15 N 1.46506 * 109.46903 * 180.02562 * 14 13 4 16 16 C 1.34769 * 120.00000 * 180.02562 * 15 14 13 17 17 O 1.21585 * 120.00343 * 359.97438 * 16 15 14 18 18 C 1.47591 * 119.99874 * 179.97438 * 16 15 14 19 19 C 1.40196 * 120.12543 * 359.97438 * 18 16 15 20 20 C 1.35757 * 120.61469 * 180.02562 * 19 18 16 21 21 C 1.41244 * 120.63661 * 0.02562 * 20 19 18 22 22 N 1.34409 * 129.48187 * 180.02562 * 21 20 19 23 23 C 1.28068 * 117.91505 * 179.29069 * 22 21 20 24 24 S 1.70646 * 111.51164 * 0.64127 * 23 22 21 25 25 C 1.40150 * 118.74080 * 359.79227 * 21 20 19 26 26 C 1.38916 * 120.41269 * 0.43682 * 25 21 20 27 27 H 1.09004 * 109.46934 * 59.99641 * 1 2 3 28 28 H 1.08997 * 109.47400 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46883 * 300.00275 * 1 2 3 30 30 H 1.09005 * 109.46883 * 239.99725 * 2 1 3 31 31 H 1.08997 * 109.47269 * 120.00143 * 2 1 3 32 32 H 1.08995 * 109.47127 * 59.99892 * 3 2 1 33 33 H 1.09000 * 109.46591 * 299.99965 * 3 2 1 34 34 H 0.96997 * 120.00267 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.46739 * 144.50555 * 13 4 3 36 36 H 1.09000 * 109.47345 * 24.50153 * 13 4 3 37 37 H 1.08996 * 109.47426 * 60.01065 * 14 13 4 38 38 H 1.08997 * 109.47793 * 300.00024 * 14 13 4 39 39 H 0.97008 * 119.99545 * 359.97438 * 15 14 13 40 40 H 1.07998 * 119.69237 * 0.02562 * 19 18 16 41 41 H 1.08003 * 119.68138 * 180.02562 * 20 19 18 42 42 H 1.07998 * 124.24454 * 180.21998 * 23 22 21 43 43 H 1.07993 * 120.07869 * 179.80997 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1903 1.4423 1.1850 6 1 3.8235 0.8646 2.0206 7 6 5.3563 2.1844 1.3129 8 7 5.5894 3.1898 0.4960 9 14 6.5946 1.7565 2.6443 10 1 7.5730 0.7739 2.1129 11 1 7.3096 2.9866 3.0693 12 1 5.8857 1.1686 3.8092 13 6 4.2370 1.4426 -1.2697 14 6 4.6115 0.0067 -1.6425 15 7 5.3440 0.0069 -2.9113 16 6 5.7772 -1.1549 -3.4395 17 8 5.5605 -2.2031 -2.8628 18 6 6.5146 -1.1548 -4.7180 19 6 6.7654 0.0523 -5.3855 20 6 7.4422 0.0639 -6.5622 21 6 7.9065 -1.1397 -7.1374 22 7 8.5870 -1.3340 -8.2801 23 6 8.9126 -2.5339 -8.5874 24 16 8.3606 -3.6503 -7.4208 25 6 7.6590 -2.3459 -6.4681 26 6 6.9619 -2.3532 -5.2665 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6768 1.9563 0.8899 33 1 1.6768 1.9562 -0.8900 34 1 6.4040 3.7087 0.5855 35 1 5.1433 2.0392 -1.1663 36 1 3.6085 1.8688 -2.0516 37 1 3.7053 -0.5900 -1.7460 38 1 5.2400 -0.4196 -0.8607 39 1 5.5165 0.8432 -3.3716 40 1 6.4169 0.9815 -4.9596 41 1 7.6274 1.0025 -7.0634 42 1 9.4613 -2.8058 -9.4770 43 1 6.7716 -3.2861 -4.7569 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731873339.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:39 Heat of formation + Delta-G solvation = 16.854324 kcal Electronic energy + Delta-G solvation = -25259.557206 eV Core-core repulsion = 21623.898680 eV Total energy + Delta-G solvation = -3635.658526 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 333.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.73715 -40.57610 -38.30064 -37.63048 -35.87223 -34.60656 -32.71760 -32.31133 -31.52065 -29.55171 -27.33872 -26.60168 -25.30608 -24.08160 -23.31605 -22.60890 -21.90424 -21.46979 -19.92510 -18.82527 -18.25043 -17.59465 -17.11497 -17.01385 -16.48894 -16.42789 -15.96008 -15.78937 -15.58500 -15.32117 -15.07030 -14.77216 -14.54171 -14.37188 -14.29012 -14.03844 -13.57153 -13.35343 -13.07638 -12.92856 -12.89067 -12.64429 -12.51411 -12.22820 -12.02569 -11.98200 -11.86754 -11.68341 -11.36405 -11.31111 -11.15746 -10.77004 -10.54905 -10.18694 -9.84461 -9.23463 -8.58682 -7.83820 -5.49560 -0.98462 -0.01062 0.14239 0.63118 0.87337 1.43048 1.47805 1.53704 1.86657 2.07234 2.49700 2.63443 2.93416 3.21592 3.45913 3.53169 3.80406 3.92936 4.04055 4.08054 4.22356 4.31562 4.38889 4.39737 4.54649 4.66872 4.68350 4.73812 4.86408 4.90508 4.98198 5.00849 5.08386 5.16539 5.22969 5.26898 5.33998 5.44467 5.44560 5.62986 5.65872 5.76491 6.43800 6.44719 6.51366 7.10585 7.16967 7.82866 8.34925 9.09682 Molecular weight = 333.13amu Principal moments of inertia in cm(-1) A = 0.014073 B = 0.002608 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.190730 B =10732.589238 C =11678.658700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 C 0.146 3.854 4 N -0.596 5.596 5 C -0.269 4.269 6 H 0.050 0.950 7 C -0.025 4.025 8 N -0.907 5.907 9 Si 0.947 3.053 10 H -0.291 1.291 11 H -0.288 1.288 12 H -0.272 1.272 13 C 0.142 3.858 14 C 0.120 3.880 15 N -0.702 5.702 16 C 0.553 3.447 17 O -0.584 6.584 18 C -0.128 4.128 19 C -0.069 4.069 20 C -0.070 4.070 21 C 0.090 3.910 22 N -0.497 5.497 23 C 0.084 3.916 24 S 0.145 5.855 25 C -0.219 4.219 26 C -0.013 4.013 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.046 0.954 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.254 0.746 35 H 0.075 0.925 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.031 0.969 39 H 0.413 0.587 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.249 0.751 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.551 -8.732 -19.840 21.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.020 3.980 4 N -0.317 5.317 5 C -0.399 4.399 6 H 0.068 0.932 7 C -0.224 4.224 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.218 1.218 11 H -0.215 1.215 12 H -0.197 1.197 13 C 0.014 3.986 14 C -0.006 4.006 15 N -0.354 5.354 16 C 0.341 3.659 17 O -0.466 6.466 18 C -0.135 4.135 19 C -0.090 4.090 20 C -0.091 4.091 21 C -0.032 4.032 22 N -0.210 5.210 23 C -0.219 4.219 24 S 0.400 5.600 25 C -0.338 4.338 26 C -0.036 4.036 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.250 0.750 40 H 0.181 0.819 41 H 0.182 0.818 42 H 0.265 0.735 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.755 -9.959 -19.744 22.430 hybrid contribution 0.601 0.857 1.171 1.571 sum 4.356 -9.102 -18.573 21.137 Atomic orbital electron populations 1.21656 0.94284 1.01750 1.02022 1.22033 0.96427 0.98805 1.00260 1.21064 0.83258 0.94444 0.99198 1.43835 1.00874 1.85323 1.01665 1.19129 1.06622 1.22088 0.92105 0.93211 1.25715 1.02045 0.94768 0.99853 1.70049 1.26214 1.17710 1.41065 0.85593 0.79734 0.77014 0.80082 1.21824 1.21463 1.19709 1.20965 0.98860 0.91964 0.86762 1.21973 0.94288 1.01222 0.83121 1.45850 1.56271 1.09142 1.24112 1.18478 0.78776 0.83649 0.84997 1.90747 1.59353 1.32793 1.63677 1.19787 1.03123 0.95064 0.95493 1.21061 0.96346 0.97534 0.94105 1.20557 0.96929 0.96666 0.94952 1.19756 0.98311 0.94351 0.90801 1.66297 1.15034 1.23700 1.15995 1.29034 0.99335 0.89570 1.03940 1.84015 1.51734 1.08731 1.15508 1.23951 1.09057 0.98408 1.02365 1.20400 0.92897 0.98516 0.91764 0.92019 0.92326 0.92635 0.93516 0.94375 0.94306 0.93404 0.93682 0.90751 0.93058 0.93079 0.95095 0.74980 0.81916 0.81799 0.73543 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.91 71.98 0.71 -3.06 16 2 C -0.14 -4.79 6.26 30.59 0.19 -4.60 16 3 C 0.15 5.88 5.71 86.38 0.49 6.37 16 4 N -0.60 -28.49 2.43 -702.01 -1.71 -30.19 16 5 C -0.27 -14.43 9.42 84.03 0.79 -13.64 16 6 H 0.05 2.73 7.92 -2.91 -0.02 2.71 16 7 C -0.03 -1.37 5.00 84.86 0.42 -0.94 16 8 N -0.91 -50.13 11.43 21.65 0.25 -49.88 16 9 Si 0.95 44.28 29.60 68.60 2.03 46.31 16 10 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 11 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 12 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 13 C 0.14 6.12 5.50 86.38 0.47 6.59 16 14 C 0.12 4.88 5.97 86.38 0.52 5.40 16 15 N -0.70 -23.15 5.51 -466.22 -2.57 -25.72 16 16 C 0.55 18.99 7.76 86.71 0.67 19.66 16 17 O -0.58 -24.75 16.34 -3.98 -0.07 -24.81 16 18 C -0.13 -3.47 5.87 -20.11 -0.12 -3.58 16 19 C -0.07 -1.44 9.44 22.17 0.21 -1.23 16 20 C -0.07 -1.39 10.03 22.43 0.23 -1.16 16 21 C 0.09 2.00 7.00 39.95 0.28 2.27 16 22 N -0.50 -9.84 10.56 -194.44 -2.05 -11.89 16 23 C 0.08 1.08 12.11 130.79 1.58 2.66 16 24 S 0.15 2.17 23.17 -56.49 -1.31 0.86 16 25 C -0.22 -4.94 6.54 22.90 0.15 -4.79 16 26 C -0.01 -0.33 9.62 22.66 0.22 -0.11 16 27 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.05 1.69 6.65 -2.38 -0.02 1.67 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.62 8.04 -2.39 -0.02 1.61 16 33 H 0.05 1.77 7.86 -2.39 -0.02 1.75 16 34 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 35 H 0.07 3.64 5.53 -2.39 -0.01 3.63 16 36 H 0.05 1.97 7.83 -2.39 -0.02 1.96 16 37 H 0.05 2.11 6.65 -2.39 -0.02 2.10 16 38 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.41 10.86 6.49 -92.70 -0.60 10.25 16 40 H 0.16 2.57 6.38 -2.91 -0.02 2.55 16 41 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 42 H 0.25 0.72 8.06 -2.91 -0.02 0.70 16 43 H 0.14 3.67 7.64 -2.91 -0.02 3.65 16 Total: -1.00 -69.73 372.62 1.84 -67.89 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.44 Total: 17.59 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 6.82 Total: 9.84 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -6.08 Total: -117.69 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 2.17 SS G_CDS: -1.31 Total: 0.86 kcal Total: -69.73 1.84 -67.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731873339.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.745 kcal (2) G-P(sol) polarization free energy of solvation -69.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds